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<p>I didn't think to post there. Thanks for the suggestion!</p>
<p>Thorin<br>
</p>
<br>
<div class="moz-cite-prefix">On 8/9/16 19:07, Fernando Perez wrote:<br>
</div>
<blockquote
cite="mid:CAHAreOoRLzd94mtGyzraqc+1U4nZ2VskikK_nM5SqDGC9bDrFQ@mail.gmail.com"
type="cite">
<div dir="ltr">Congrats, and thanks for letting us know!
<div><br>
</div>
<div>BTW, I didn't see your post on the general Jupyter list:</div>
<div><br>
</div>
<div><a moz-do-not-send="true"
href="https://groups.google.com/forum/#%21forum/jupyter">https://groups.google.com/forum/#!forum/jupyter</a><br>
</div>
<div><br>
</div>
<div>I'd recommend reposting there, as most of Jupyter-general
discussion has moved over to that forum, leaving the IPython
list for topics that are more specific to that kernel and
terminal shell. Obviously it's quite OK to post there too,
I'm just thinking of having better reach for your message.</div>
<div><br>
</div>
<div>Best</div>
<div><br>
</div>
<div>f</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Fri, Aug 5, 2016 at 1:16 PM, Thorin
Tabor <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:thorin@broadinstitute.org" target="_blank">thorin@broadinstitute.org</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000">
<p>We are pleased to announce the release of GenePattern
Notebook, an extension for Jupyter which provides access
to hundreds of different bioinformatic analyses through
the GenePattern web service.<br>
<br>
<a moz-do-not-send="true"
href="http://genepattern.org/genepattern-notebooks"
rel="noreferrer" target="_blank">http://genepattern.org/genepat<wbr>tern-notebooks</a><br>
<a moz-do-not-send="true"
href="https://github.com/genepattern/genepattern-notebook"
rel="noreferrer" target="_blank">https://github.com/genepattern<wbr>/genepattern-notebook</a><br>
<br>
Supported analyses include machine learning algorithms
(clustering, classification, dimension reduction), tools
for working with gene expression data (both RNA-seq and
microarray), sequence variation and copy number
analysis, proteomics, flow cytometry and network
analysis.<br>
<br>
Included in the extension are visual widgets for running
analyses, tools for sending results to downstream steps
in a bioinformatic workflow, Jupyter magics for creating
GenePattern widgets and a Python library for
programmatically working with your results.<br>
<br>
To get started after installing the extension, just open
a notebook and change a cell to the new GenePattern cell
type. A full walk-through of using the extension is
available on our website:<br>
<br>
<a moz-do-not-send="true"
href="http://genepattern.org/using-the-genepattern-notebook-environment"
rel="noreferrer" target="_blank">http://genepattern.org/using-t<wbr>he-genepattern-notebook-enviro<wbr>nment</a><br>
<br>
An early version of the GenePattern Notebook Repository,
a service providing access to GenePattern Notebook
functionality as well as a variety of example notebooks,
is available at the address below.<br>
<br>
<a moz-do-not-send="true"
href="https://notebook.genepattern.org"
rel="noreferrer" target="_blank">https://notebook.genepattern.o<wbr>rg</a><br>
<br>
The GenePattern Notebook extension can also be easily
installed from pip or conda:<br>
<br>
pip install genepattern-notebook<br>
<br>
or<br>
<br>
conda install -c genepattern genepattern-notebook<br>
<br>
Once installed, you will need to install and enable the
accompanying server and nbextensions. The ipywidgets
nbextension must also be enabled:<br>
<br>
jupyter nbextension enable --py widgetsnbextension<br>
jupyter nbextension install --py genepattern<br>
jupyter nbextension enable --py genepattern<br>
jupyter serverextension enable --py genepattern<br>
<br>
The GenePattern Notebook extension supports both Python
3.3+ and Python 2.7.<br>
<br>
Cheers!<br>
The GenePattern Team</p>
</div>
<br>
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<br>
</blockquote>
</div>
<br>
<br clear="all">
<div><br>
</div>
-- <br>
<div class="gmail_signature" data-smartmail="gmail_signature">Fernando
Perez (@fperez_org; <a moz-do-not-send="true"
href="http://fperez.org" target="_blank">http://fperez.org</a>)<br>
fperez.net-at-gmail: mailing lists only (I ignore this when
swamped!)<br>
fernando.perez-at-berkeley: contact me here for any direct
mail<br>
</div>
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