<div dir="ltr"><div>nice !<br></div>JB<br></div><div class="gmail_extra"><br><div class="gmail_quote">On Fri, Jul 24, 2015 at 5:25 PM, Michael Waskom <span dir="ltr"><<a href="mailto:mwaskom@stanford.edu" target="_blank">mwaskom@stanford.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Here's my approach: <a href="https://github.com/cni/rtfmri/blob/master/rtfmri/analyzers.py#L215" target="_blank">https://github.com/cni/rtfmri/blob/master/rtfmri/analyzers.py#L215</a></div><div class="HOEnZb"><div class="h5"><div class="gmail_extra"><br><div class="gmail_quote">On Fri, Jul 24, 2015 at 3:19 PM, Alexis Roche <span dir="ltr"><<a href="mailto:alexis.roche@gmail.com" target="_blank">alexis.roche@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><p dir="ltr">This message is printed by scipy.optimize, don't know if there is a similar way to disable it.</p><div><div>
<div class="gmail_quote">Le 24 juil. 2015 23:50, "Satrajit Ghosh" <<a href="mailto:satra@mit.edu" target="_blank">satra@mit.edu</a>> a écrit :<br type="attribution"><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">thanks alexis.<div><br></div><div>that indeed worked for the histogram registration. </div><div><br></div><div>is there a similar trick for the optimizer?</div><div><br></div><div><pre style="overflow:auto;font-size:14px;padding:0px;margin-top:0px;margin-bottom:0px;line-height:17.0001px;word-break:break-all;word-wrap:break-word;color:rgb(0,0,0);border:0px;border-radius:0px;white-space:pre-wrap;vertical-align:baseline">Optimization terminated successfully.
Current function value: -0.506414
Iterations: 3
Function evaluations: 106</pre><pre style="overflow:auto;font-size:14px;padding:0px;margin-top:0px;margin-bottom:0px;line-height:17.0001px;word-break:break-all;word-wrap:break-word;color:rgb(0,0,0);border:0px;border-radius:0px;white-space:pre-wrap;vertical-align:baseline"><br></pre></div><div>i tried this: nipy.algorithms.registration.optimizer.VERBOSE = False</div><div><br></div><div>but that didn't work.</div><div><br></div><div>these are the two relevant lines:</div><div><br></div><div><div> R = HistogramRegistration(source, target, similarity=similarity, interp=interp,</div><div> renormalize=renormalize)</div><div> T = R.optimize('rigid', optimizer=optimizer)</div></div><div><br></div><div class="gmail_extra"><br clear="all"><div><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr">cheers,<br><br>satra<br><br></div></div></div></div></div></div></div><div class="gmail_quote">On Fri, Jul 24, 2015 at 5:37 PM, Alexis Roche <span dir="ltr"><<a href="mailto:alexis.roche@gmail.com" target="_blank">alexis.roche@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><p dir="ltr">Hi Satra,</p>
<p dir="ltr">I think this should do the trick:</p>
<p dir="ltr">nipy.algorithms.registration.histogram_registration.VERBOSE = False</p>
<p dir="ltr">Alexis</p>
<div class="gmail_quote"><div><div>Le 24 juil. 2015 22:19, "Satrajit Ghosh" <<a href="mailto:satra@mit.edu" target="_blank">satra@mit.edu</a>> a écrit :<br type="attribution"></div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div><div dir="ltr">hi,<div><br></div><div>is there a way to control verbosity of HistogramRegistration in nipy?</div><div><br clear="all"><div><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr">cheers,<br><br>satra<br><br></div></div></div></div></div></div></div>
</div></div>
<br></div></div>_______________________________________________<br>
Neuroimaging mailing list<br>
<a href="mailto:Neuroimaging@python.org" target="_blank">Neuroimaging@python.org</a><br>
<a href="https://mail.python.org/mailman/listinfo/neuroimaging" rel="noreferrer" target="_blank">https://mail.python.org/mailman/listinfo/neuroimaging</a><br>
<br></blockquote></div>
<br>_______________________________________________<br>
Neuroimaging mailing list<br>
<a href="mailto:Neuroimaging@python.org" target="_blank">Neuroimaging@python.org</a><br>
<a href="https://mail.python.org/mailman/listinfo/neuroimaging" rel="noreferrer" target="_blank">https://mail.python.org/mailman/listinfo/neuroimaging</a><br>
<br></blockquote></div><br></div></div>
<br>_______________________________________________<br>
Neuroimaging mailing list<br>
<a href="mailto:Neuroimaging@python.org" target="_blank">Neuroimaging@python.org</a><br>
<a href="https://mail.python.org/mailman/listinfo/neuroimaging" rel="noreferrer" target="_blank">https://mail.python.org/mailman/listinfo/neuroimaging</a><br>
<br></blockquote></div>
</div></div><br>_______________________________________________<br>
Neuroimaging mailing list<br>
<a href="mailto:Neuroimaging@python.org" target="_blank">Neuroimaging@python.org</a><br>
<a href="https://mail.python.org/mailman/listinfo/neuroimaging" rel="noreferrer" target="_blank">https://mail.python.org/mailman/listinfo/neuroimaging</a><br>
<br></blockquote></div><br></div>
</div></div><br>_______________________________________________<br>
Neuroimaging mailing list<br>
<a href="mailto:Neuroimaging@python.org">Neuroimaging@python.org</a><br>
<a href="https://mail.python.org/mailman/listinfo/neuroimaging" rel="noreferrer" target="_blank">https://mail.python.org/mailman/listinfo/neuroimaging</a><br>
<br></blockquote></div><br></div>