<div dir="ltr">Hey Julien, <div class="gmail_extra"><br><div class="gmail_quote">On Tue, Oct 27, 2015 at 12:04 PM, Julien Cohen-Adad <span dir="ltr"><<a href="mailto:jcohen@polymtl.ca" target="_blank">jcohen@polymtl.ca</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr">Hi everyone,<div><br></div><div>would it be possible to add our neuroimaging project to the nipy website?</div><div><a href="https://github.com/neuropoly/spinalcordtoolbox" target="_blank">https://github.com/neuropoly/spinalcordtoolbox</a><br></div><div><br></div></div></blockquote><div><br></div><div>I am +1 for adding the toolbox to the project directory. </div><div><br></div><div>How about putting in a PR on the website Github repo for this? </div><div><br></div><div><a href="http://nipy.org/contribute.html#add-a-package">http://nipy.org/contribute.html#add-a-package</a> <br></div><div><br></div><div> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr"><div></div><div>it is 100% python and notably uses nibabel and dipy.<br></div><div><br></div><div>cheers</div><div>julien</div><div><br></div></div><div class="gmail_extra"><br clear="all"><div><div><div dir="ltr"><div><div dir="ltr"><div>--</div><div>Julien Cohen-Adad, PhD</div><div>Assistant Professor, Polytechnique Montreal</div><div>Associate Director, Functional Neuroimaging Unit, University of Montreal</div><div>Phone: <a href="tel:514%20340%205121" value="+15143405121" target="_blank">514 340 5121</a> (office: 2264); Skype: jcohenadad<br></div><div>Web: <a href="http://www.neuro.polymtl.ca" target="_blank">www.neuro.polymtl.ca</a></div></div></div></div></div></div><div><div>
<br><div class="gmail_quote">On Tue, Oct 27, 2015 at 2:44 PM, Eleftherios Garyfallidis <span dir="ltr"><<a href="mailto:garyfallidis@gmail.com" target="_blank">garyfallidis@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr">Epic awesomeness! Thank you Vanessa!</div><div><div><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Oct 27, 2015 at 2:40 PM, Ariel Rokem <span dir="ltr"><<a href="mailto:arokem@gmail.com" target="_blank">arokem@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr">Great work! Will resubmit my blog-post PR through the new mechanism. </div><div><div><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Oct 27, 2015 at 11:38 AM, vanessa sochat <span dir="ltr"><<a href="mailto:vsochat@stanford.edu" target="_blank">vsochat@stanford.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr">Hi everyone,<div><br></div><div>I just added the missing CNAME file, apologies for the oversight, I did not know it was there :) It looks like <a href="http://nipy.org" target="_blank">nipy.org</a> is working as well now too - please let me know if you see any issues.</div><div><br></div><div>Circle is expected to have some changes in the next week, so I am going to wait for the weekend to debug the building of artifacts. Will let you know when I fix that up!</div><div><br></div><div>Best,</div><div><br></div><div>Vanessa</div></div><div><div><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Oct 27, 2015 at 11:30 AM, vanessa sochat <span dir="ltr"><<a href="mailto:vsochat@stanford.edu" target="_blank">vsochat@stanford.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr">Hi Everyone,<div><br></div><div>Site is live!</div><div><br></div><div><a href="https://nipy.github.io/" target="_blank">https://nipy.github.io/</a><br></div><div><br></div><div>Ariel - I'm not sure how to set up the <a href="http://nipy.org" target="_blank">nipy.org</a>. Would you mind taking a look and fixing that up?</div><div><br></div><div>Circle is having some bugs with the artifact generation, I think I can probably fix it, but not during the work week. Ben - I added your contribution to the README but didn't get the other comment in time. The good news is now anyone and everyone can submit changes as PR. I encourage everyone to familiarize yourself with tumblr, and start contributing content, PRs to tweak it.</div><div><br></div><div>Best,</div><div><br></div><div>Vanessa </div></div><div><div><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Oct 27, 2015 at 11:10 AM, vanessa sochat <span dir="ltr"><<a href="mailto:vsochat@stanford.edu" target="_blank">vsochat@stanford.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr">Got it! Thanks! :)</div><div><div><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Oct 27, 2015 at 11:07 AM, Ariel Rokem <span dir="ltr"><<a href="mailto:arokem@gmail.com" target="_blank">arokem@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr"><div class="gmail_extra">Hi, <br><div class="gmail_quote"><span>On Tue, Oct 27, 2015 at 10:56 AM, vanessa sochat <span dir="ltr"><<a href="mailto:vsochat@stanford.edu" target="_blank">vsochat@stanford.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr">Hi Ariel,<div><br></div><div>Please add me as an admin to <a href="http://nipy.github.io" target="_blank">nipy.github.io</a>, so I can set up circle for CI. Thanks!</div><div><br></div></div></blockquote><div><br></div></span><div>I believe I just did that. Let me know how you get on. </div><div><div><div> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr"><div></div><div>Best,</div><div><br></div><div>Vanessa </div></div><div><div><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Oct 27, 2015 at 10:42 AM, vanessa sochat <span dir="ltr"><<a href="mailto:vsochat@stanford.edu" target="_blank">vsochat@stanford.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr">Just as a proof of concept for adding a project - I just added a new entry to the data file (copy pasting basically), copied one file, and the entire process took me like, 48 seconds :)</div><div><div><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Oct 27, 2015 at 10:36 AM, Ben Cipollini <span dir="ltr"><<a href="mailto:bcipolli@ucsd.edu" target="_blank">bcipolli@ucsd.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr">Thanks Vanessa!</div><div><div><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Oct 27, 2015 at 10:35 AM, vanessa sochat <span dir="ltr"><<a href="mailto:vsochat@stanford.edu" target="_blank">vsochat@stanford.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr">I will do some tweaks and get the site working. There will be a change for the URL so there might be some bugs with my initial release, but I'll get it fixed asap. Will send an update later.</div><div><div><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Oct 27, 2015 at 6:48 AM, Ariel Rokem <span dir="ltr"><<a href="mailto:arokem@gmail.com" target="_blank">arokem@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr">Oh, one more: <br><div class="gmail_extra"><br><div class="gmail_quote"><span>On Tue, Oct 27, 2015 at 6:40 AM, Ariel Rokem <span dir="ltr"><<a href="mailto:arokem@gmail.com" target="_blank">arokem@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr"><div>Hi Vanessa, </div><div><br></div><div>I have a few comments/suggestions: </div><div><br></div><div>1. I would rather not have the front page be the project directory. In my opinion, the front page should instead explain briefly what this is, and lead visitors to the various other parts of the website. </div><div><br></div><div>2. There are a few issues with formatting in the Code of Conduct page (bullet points appear as continued lines) </div></div></blockquote><div><br></div><div><br></div></span><div>3. Please include mindboggle in the project directory (it's been recently added!). </div><div><div><div> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr"><div></div><div>Other than these two, I think this is ready to be introduced as a PR against the nipy/<a href="http://nipy.github.com" target="_blank">nipy.github.com</a> repository (you don't need any admin rights to do that, but I also just added you to "team blog" on the github nipy org, so you can even do the merge yourself, if you want).</div><div><br></div><div>Cheers, </div><span><font color="#888888"><div><br></div><div>Ariel </div></font></span><div><div><div class="gmail_extra"><br><div class="gmail_quote">On Mon, Oct 26, 2015 at 12:56 PM, vanessa sochat <span dir="ltr"><<a href="mailto:vsochat@stanford.edu" target="_blank">vsochat@stanford.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr">Hi Eleftherios,<div><br></div><div>It definitely would be possible! I'm not any sort of admin in the nipy space, so the farthest I could take it is having the repo for someone to deploy on <a href="http://nipy.github.io" target="_blank">nipy.github.io</a>. The code is here:</div><div><br></div><div><a href="https://github.com/vsoch/nipy-jekyll" target="_blank">https://github.com/vsoch/nipy-jekyll</a><br></div><div><br></div><div>and deployment on my github pages:</div><div><br></div><div><a href="http://vsoch.github.io/nipy-jekyll/" target="_blank">http://vsoch.github.io/nipy-jekyll/</a><br></div><div><br></div><div>I mostly stopped working on it because I accomplished all the things that I set out to do (jekyll site, preview on continuous integration with circle, standard ways to add new content, and an easy way to <a href="http://vsoch.github.io/nipy-jekyll/contribute.html" target="_blank">multiple ways to add content a la github</a>, or for those who aren't comfortable with pushing and pulling, <a href="http://neuroimaging.tumblr.com" target="_blank">la social media</a>). I think I had suggested moving forward for people to try out tumblr (and start contributing content!), and if people were happy, to move it over to the nipy repo. If the outcome of the work was not a desired solution, I was content to just let it be. However if there is interest, that is definitely still a possibility.</div><div><br></div><div>Best,</div><div><br></div><div>Vanessa</div><div><br></div><div><br></div></div><div><div><div class="gmail_extra"><br><div class="gmail_quote">On Mon, Oct 26, 2015 at 12:34 PM, Eleftherios Garyfallidis <span dir="ltr"><<a href="mailto:garyfallidis@gmail.com" target="_blank">garyfallidis@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr">Hi Vanessa and all,<div><br></div><div>Would it be possible to switch to your much nicer new website? I still see the older version being up. </div><div><br></div><div>Do you have a plan for this? Or you waiting for some feedback on our side?</div><div><br></div><div>Best regards,</div><div>Eleftherios</div></div><div><div><div class="gmail_extra"><br><div class="gmail_quote">On Wed, Sep 2, 2015 at 12:57 PM, Ben Cipollini <span dir="ltr"><<a href="mailto:bcipolli@ucsd.edu" target="_blank">bcipolli@ucsd.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr">I think they're good for mobile sites. I think they're generally expanded by default on full screens, and compacted on mobile. So I suggest to keep it, but have a regular menu that's showing on full screens and hidden on mobile.</div><div><div><div class="gmail_extra"><br><div class="gmail_quote">On Wed, Sep 2, 2015 at 9:51 AM, vanessa sochat <span dir="ltr"><<a href="mailto:vsochat@stanford.edu" target="_blank">vsochat@stanford.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr">That's a good suggestion, and I'll add as an issue so I can find it easily when the next round of changes comes around. Generally, these "hamburger" menu things are useless functionality wise, and only serve to aesthetically "get rid of the navigation" to have a clean looking site. In our case, it is probably just annoying to have the extra clicks.</div><div><div><div class="gmail_extra"><br><div class="gmail_quote">On Wed, Sep 2, 2015 at 8:50 AM, Ben Cipollini <span dir="ltr"><<a href="mailto:bcipolli@ucsd.edu" target="_blank">bcipolli@ucsd.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div dir="ltr">This looks great. It's also cool to see "ask a question" integrated into the website, though we'll still have to hash things out for that.<div><br></div><div>Rather than open a github issue (which few may see), I'll make a suggestion here: can we have the menu expanded by default when accessing via a full-size screen?</div><div><br></div><div>It feels odd to me to have to expand the menu in order to navigate anywhere, by default. To me, navigation options should be obvious, unless pressed for space.</div><div><br></div><div><br></div></div><div class="gmail_extra"><br><div class="gmail_quote"><span>On Sun, Aug 30, 2015 at 1:14 PM, vanessa sochat <span dir="ltr"><<a href="mailto:vsochat@stanford.edu" target="_blank">vsochat@stanford.edu</a>></span> wrote:<br></span><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div><div><div dir="ltr">Hi Everyone,<div><br></div><div>I've finished work on the "contribute" page with my thinking for how to contribute various content:</div><div><br></div><div><a href="http://vsoch.github.io/nipy-jekyll/contribute.html" target="_blank">http://vsoch.github.io/nipy-jekyll/contribute.html</a><br></div><div><br></div><div>and as an example, put up a quick blog post:</div><div><br></div><div><a href="http://neuroimaging.tumblr.com/" target="_blank">http://neuroimaging.tumblr.com/</a><br></div><div><br></div><div>The old "example" blog posts are hidden (private) and can be viewed if you are a contributor. I'd like to add anyone and everyone interested to contribute as "official" contributors via tumblr - if you are interested please send me your email address. I've already invited some of you for which I know the email.</div><div><br></div><div>Best,</div><div><br></div><div>Vanessa</div><span><font color="#888888"><div><br></div><div><div><br></div>-- <br><div>Vanessa Villamia Sochat<br>Stanford University<br><div><div><div><a href="tel:%28603%29%20321-0676" value="+16033210676" target="_blank">(603) 321-0676</a></div></div></div></div>
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<br></blockquote></div><br><br clear="all"><div><br></div>-- <br><div>Vanessa Villamia Sochat<br>Stanford University<br><div><div><div><a href="tel:%28603%29%20321-0676" value="+16033210676" target="_blank">(603) 321-0676</a></div></div></div></div>
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<br></blockquote></div><br><br clear="all"><div><br></div>-- <br><div>Vanessa Villamia Sochat<br>Stanford University<br><div><div><div><a href="tel:%28603%29%20321-0676" value="+16033210676" target="_blank">(603) 321-0676</a></div></div></div></div>
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</div>
</div></div></blockquote></div><br><br clear="all"><div><br></div>-- <br><div>Vanessa Villamia Sochat<br>Stanford University<br><div><div><div><a href="tel:%28603%29%20321-0676" value="+16033210676" target="_blank">(603) 321-0676</a></div></div></div></div>
</div>
</div></div></blockquote></div><br><br clear="all"><div><br></div>-- <br><div>Vanessa Villamia Sochat<br>Stanford University<br><div><div><div><a href="tel:%28603%29%20321-0676" value="+16033210676" target="_blank">(603) 321-0676</a></div></div></div></div>
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