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<p>A quick beginner guide to python would probably help you
<a class="moz-txt-link-freetext" href="https://www.python.org/about/gettingstarted/">https://www.python.org/about/gettingstarted/</a></p>
<p>As a quick tip, most stuff can be easily installed with pip like
this</p>
<p>pip install dipy nibabel numpy scipy pywavelets</p>
<p>or any other library available from pypi. For other software,
most of them are also easily installable through a setup.py file,
but I strongly suggest to read a bit about python and how it works
first.</p>
<p>As for denoising, well, there is nlmeans in dipy (good for
structural imaging for example), some other algorithms are
probably available in pytohn if you look around and apparently a
pr for wavelet mixing denoising is in the works, but it has not
been reviewed so far, and you would need to checkout and use the
guy branch to try it out. <br>
</p>
<p>Try to get the examples/some test code running, importing modules
and such on your own and we can see afterward how it goes.<br>
</p>
<br>
<div class="moz-cite-prefix">Le 2016-06-05 à 18:19, Vivek Joshi a
écrit :<br>
</div>
<blockquote
cite="mid:57545127.e9c2420a.890f1.ffffcd71@mx.google.com"
type="cite">
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<div>
<div style="font-family: Calibri,sans-serif; font-size: 11pt;">Hello
<br>
Can you tell me the steps to install dipy from a release.<br>
Steps to install modules like pywavelets nibabel and modules
for adaptive denoising.<br>
Thank you </div>
</div>
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<hr><span style="font-family: Calibri,sans-serif; font-size:
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<span style="font-family: Calibri,sans-serif; font-size: 11pt;
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<span style="font-family: Calibri,sans-serif; font-size: 11pt;
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Today's Topics:<br>
<br>
1. errors installing other modules in dipy (Vivek Joshi)<br>
2. Re: errors installing other modules in dipy (Ariel Rokem)<br>
<br>
<br>
----------------------------------------------------------------------<br>
<br>
Message: 1<br>
Date: Sun, 5 Jun 2016 16:00:07 +0530<br>
From: Vivek Joshi <a class="moz-txt-link-rfc2396E" href="mailto:vivekjoshi1894@gmail.com"><vivekjoshi1894@gmail.com></a><br>
To: <a class="moz-txt-link-abbreviated" href="mailto:neuroimaging@python.org">neuroimaging@python.org</a><br>
Subject: [Neuroimaging] errors installing other modules in dipy<br>
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<br>
hello<br>
I ve installed dipy using the instructions given in the dipy
website. But<br>
when trying to install other modules my setup.py got overwritten.
Now i m<br>
getting errors trying to fetch sherbrooke_3shell dataset.<br>
Also i want to denoise the dataset using wavelet denoising. For
that i need<br>
to install other modules. How to do that?<br>
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Message: 2<br>
Date: Sun, 5 Jun 2016 08:51:50 -0700<br>
From: Ariel Rokem <a class="moz-txt-link-rfc2396E" href="mailto:arokem@gmail.com"><arokem@gmail.com></a><br>
To: Neuroimaging analysis in Python
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Subject: Re: [Neuroimaging] errors installing other modules in
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<br>
Hi Vivek,<br>
<br>
On Sun, Jun 5, 2016 at 3:30 AM, Vivek Joshi
<a class="moz-txt-link-rfc2396E" href="mailto:vivekjoshi1894@gmail.com"><vivekjoshi1894@gmail.com></a><br>
wrote:<br>
<br>
> hello<br>
> I ve installed dipy using the instructions given in the dipy
website. But<br>
> when trying to install other modules my setup.py got
overwritten. Now i m<br>
> getting errors trying to fetch sherbrooke_3shell dataset.<br>
><br>
<br>
I am not exactly sure what you mean. Could you tell me exactly
what you did<br>
(step by step)? Which instructions did you follow? The ones to
install from<br>
the source code (<br>
<a class="moz-txt-link-freetext" href="http://nipy.org/dipy/installation.html#installing-from-source">http://nipy.org/dipy/installation.html#installing-from-source</a>)? Or
for<br>
installing a released version (I think that would be better in
this case:<br>
<a class="moz-txt-link-freetext" href="http://nipy.org/dipy/installation.html#installing-a-release">http://nipy.org/dipy/installation.html#installing-a-release</a>)?<br>
<br>
<br>
> Also i want to denoise the dataset using wavelet denoising.
For that i<br>
> need to install other modules. How to do that?<br>
><br>
<br>
Again - I am not exactly sure what you mean. Do you mean that you
want to<br>
install other libraries (e.g., pywavelets<br>
<a class="moz-txt-link-rfc2396E" href="http://www.pybytes.com/pywavelets/"><http://www.pybytes.com/pywavelets/></a>)? You should be able to
do that in<br>
parallel to your Dipy installation.<br>
<br>
Cheers,<br>
<br>
Ariel<br>
<br>
<br>
<br>
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