<div dir="auto">Congrats!</div><div class="gmail_extra"><br><div class="gmail_quote">On Jul 2, 2017 10:55 AM, "Bertrand Thirion" <<a href="mailto:bertrand.thirion@inria.fr">bertrand.thirion@inria.fr</a>> wrote:<br type="attribution"><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div style="font-family:times new roman,new york,times,serif;font-size:12pt;color:#000000"><div>Congratulations for the release !<br></div><div>Best,<br></div><div><br></div><div>Bertrand<br></div><div><br></div><hr id="m_6168987885311336431zwchr"><blockquote style="border-left:2px solid #1010ff;margin-left:5px;padding-left:5px;color:#000;font-weight:normal;font-style:normal;text-decoration:none;font-family:Helvetica,Arial,sans-serif;font-size:12pt"><b>De: </b>"Eleftherios Garyfallidis" <<a href="mailto:elef@indiana.edu" target="_blank">elef@indiana.edu</a>><br><b>À: </b>"Neuroimaging analysis in Python" <<a href="mailto:neuroimaging@python.org" target="_blank">neuroimaging@python.org</a>><br><b>Envoyé: </b>Dimanche 2 Juillet 2017 03:33:31<br><b>Objet: </b>[Neuroimaging] ANN: DIPY 0.12.0 release<br><div><br></div><div dir="ltr"><span id="m_6168987885311336431m_3113844798164658757inbox-inbox-docs-internal-guid-35c9f45a-f474-9bbc-a0b4-3a933f7889fc"><p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span style="font-size:11pt;font-family:Arial;color:rgb(34,34,34);vertical-align:baseline;white-space:pre-wrap">We are excited to announce a new public release of Diffusion Imaging in Python (DIPY). </span></p><p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span style="font-size:11pt;font-family:Arial;color:rgb(34,34,34);vertical-align:baseline;white-space:pre-wrap"><br></span></p><p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">DIPY 0.12 (Tuesday, 26 June 2017)</span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap"><br class="m_6168987885311336431m_3113844798164658757inbox-inbox-kix-line-break"><br class="m_6168987885311336431m_3113844798164658757inbox-inbox-kix-line-break"></span></p><p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">This release received contributions from 48 developers (the full release notes are at: </span><a href="http://nipy.org/dipy/release0.12.html" style="text-decoration:none" target="_blank"><span style="font-size:11pt;font-family:Arial;color:rgb(17,85,204);background-color:transparent;text-decoration:underline;vertical-align:baseline;white-space:pre-wrap">http://nipy.org/dipy/release0.<wbr>12.html</span></a><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">)</span></p><br><p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">Highlights of this release include:</span></p><p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap"> </span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap"><br class="m_6168987885311336431m_3113844798164658757inbox-inbox-kix-line-break"></span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">- IVIM Simultaneous modeling of perfusion and diffusion.</span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap"><br class="m_6168987885311336431m_3113844798164658757inbox-inbox-kix-line-break"></span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">- MAPL, tissue microstructure estimation using Laplacian-regularized MAP-MRI.</span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap"><br class="m_6168987885311336431m_3113844798164658757inbox-inbox-kix-line-break"></span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">- DKI-based microstructural modelling.</span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap"><br class="m_6168987885311336431m_3113844798164658757inbox-inbox-kix-line-break"></span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">- Free water diffusion tensor imaging.</span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap"><br class="m_6168987885311336431m_3113844798164658757inbox-inbox-kix-line-break"></span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">- Denoising using Local PCA.</span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap"><br class="m_6168987885311336431m_3113844798164658757inbox-inbox-kix-line-break"></span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">- Streamline-based registration (SLR).</span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap"><br class="m_6168987885311336431m_3113844798164658757inbox-inbox-kix-line-break"></span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">- Fiber to bundle coherence (FBC) measures.</span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap"><br class="m_6168987885311336431m_3113844798164658757inbox-inbox-kix-line-break"></span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">- Bayesian MRF-based tissue classification.</span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap"><br class="m_6168987885311336431m_3113844798164658757inbox-inbox-kix-line-break"></span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">- New API for integrated user interfaces.</span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap"><br class="m_6168987885311336431m_3113844798164658757inbox-inbox-kix-line-break"></span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">- New hdf5 file (.pam5) for saving reconstruction results.</span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap"><br class="m_6168987885311336431m_3113844798164658757inbox-inbox-kix-line-break"></span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">- Interactive slicing of images, ODFs and peaks.</span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap"><br class="m_6168987885311336431m_3113844798164658757inbox-inbox-kix-line-break"></span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">- Updated API to support latest numpy versions.</span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap"><br class="m_6168987885311336431m_3113844798164658757inbox-inbox-kix-line-break"></span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">- New system for automatically generating command line interfaces.</span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap"><br class="m_6168987885311336431m_3113844798164658757inbox-inbox-kix-line-break"></span><span style="font-size:11pt;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">- Faster computation of cross correlation for image registration.</span></p><br><p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span style="font-size:11pt;font-family:Arial;color:rgb(34,34,34);vertical-align:baseline;white-space:pre-wrap">T</span><a href="http://dipy.org/release0.10.html" style="text-decoration:none" target="_blank"><span style="font-size:11pt;font-family:Arial;color:rgb(34,34,34);vertical-align:baseline;white-space:pre-wrap">o upgrade, run the following command in your terminal: </span></a><br></p><p style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><br></p><p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span style="font-size:11pt;font-family:Arial;color:rgb(34,34,34);font-weight:700;vertical-align:baseline;white-space:pre-wrap">pip install --upgrade dipy</span></p><br><p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span style="font-size:11pt;font-family:Arial;color:rgb(34,34,34);vertical-align:baseline;white-space:pre-wrap">or</span></p><br><p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span style="font-size:11pt;font-family:Arial;color:rgb(34,34,34);font-weight:700;vertical-align:baseline;white-space:pre-wrap">conda install -c conda-forge dipy</span></p><br><p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span style="font-size:11pt;font-family:Arial;color:rgb(34,34,34);vertical-align:baseline;white-space:pre-wrap">This version of DIPY depends on the latest version of nibabel (2.1.0). </span></p><p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span style="font-size:11pt;font-family:Arial;color:rgb(34,34,34);vertical-align:baseline;white-space:pre-wrap"> </span></p><p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span style="font-size:11pt;font-family:Arial;color:rgb(34,34,34);vertical-align:baseline;white-space:pre-wrap">For any questions go to </span><a href="http://dipy.org/" style="text-decoration:none" target="_blank"><span style="font-size:11pt;font-family:Arial;color:rgb(17,85,204);text-decoration:underline;vertical-align:baseline;white-space:pre-wrap">http://dipy.org</span></a><span style="font-size:11pt;font-family:Arial;color:rgb(34,34,34);vertical-align:baseline;white-space:pre-wrap">, or send an e-mail to </span><a href="mailto:neuroimaging@python.org" style="text-decoration:none" target="_blank"><span style="font-size:11pt;font-family:Arial;color:rgb(17,85,204);text-decoration:underline;vertical-align:baseline;white-space:pre-wrap">neuroimaging@python.org</span></a><span style="font-size:11pt;font-family:Arial;vertical-align:baseline;white-space:pre-wrap"> </span></p><p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span style="font-size:11pt;font-family:Arial;vertical-align:baseline;white-space:pre-wrap">We also have an instant messaging service and chat room available at </span><a href="https://gitter.im/nipy/dipy" style="text-decoration:none" target="_blank"><span style="font-size:11pt;font-family:Arial;color:rgb(17,85,204);text-decoration:underline;vertical-align:baseline;white-space:pre-wrap">https://gitter.im/nipy/dipy</span></a><br></p><br><p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span style="font-size:11pt;font-family:Arial;color:rgb(34,34,34);vertical-align:baseline;white-space:pre-wrap">On behalf of the DIPY developers,</span></p><p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><span style="font-size:11pt;font-family:Arial;color:rgb(34,34,34);vertical-align:baseline;white-space:pre-wrap">Eleftherios Garyfallidis, Ariel Rokem, Serge Koudoro</span></p><p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt"><a href="http://dipy.org/developers.html" style="text-decoration:none" target="_blank"><span style="font-size:11pt;font-family:Arial;color:rgb(17,85,204);text-decoration:underline;vertical-align:baseline;white-space:pre-wrap">http://dipy.org/developers.<wbr>html</span></a><br></p></span><img alt="" src="https://ssl.gstatic.com/bt/C3341AA7A1A076756462EE2E5CD71C11/1x/btw_ic_minimize_white_18dp.png"><br class="m_6168987885311336431m_3113844798164658757inbox-inbox-Apple-interchange-newline"></div>
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