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<div class="moz-cite-prefix">Congratulations for the release !<br>
<br>
Bertrand<br>
<br>
On 12/06/2018 20:06, Christopher Markiewicz wrote:<br>
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<div>Hi all,<br>
<br>
<span class="il">Nibabel</span> <span class="il">2.3</span>
has been released just in time for OHBM. It's been published
to PyPI and should be available on conda-forge within the next
day.<br>
<div><br>
</div>
<div>Features to look out for in this release are a new image
slicing interface and TRK/TCK conversion tools. There have
also been a number of first-time contributors, which is
always good to see.<br>
</div>
<div><br>
</div>
<div>As always, thanks to all contributors, reviewers and
users.</div>
<div><br>
</div>
Please cite using the Zenodo DOI: <a
href="https://doi.org/10.5281/zenodo.1287921"
class="OWAAutoLink" id="LPlnk702021" previewremoved="true"
moz-do-not-send="true">https://doi.org/10.5281/zenodo.1287921</a></div>
<div><br>
</div>
<div>The full changelog follows:</div>
<div><br>
</div>
<div><br>
</div>
<div>New feature release for the 2.3 series.<br>
<div><br>
Most work on NiBabel so far has been by Matthew Brett (MB),
Michael Hanke (MH)<br>
Ben Cipollini (BC), Marc-Alexandre Côté (MC), Chris
Markiewicz (CM), Stephan<br>
Gerhard (SG) and Eric Larson (EL).<br>
<br>
References like "pr/298" refer to github pull request
numbers.<br>
<br>
New features<br>
------------<br>
* TRK <=> TCK streamlines conversion CLI tools
(pr/606) (MC, reviewed by CM)<br>
* Image slicing for SpatialImages (pr/550) (CM)<br>
<br>
Enhancements<br>
------------<br>
* Simplify MGHImage and add footer fields (pr/569) (CM,
reviewed by MB)<br>
* Force sform/qform codes to be ints, rather than numpy
types (pr/575) (Paul<br>
McCarthy, reviewed by MB, CM)<br>
* Auto-fill color table in FreeSurfer annotation file
(pr/592) (Paul McCarthy,<br>
reviewed by CM, MB)<br>
* Set default intent code for CIFTI2 images (pr/604)
(Mathias Goncalves,<br>
reviewed by CM, Satra Ghosh, MB, Tim Coalson)<br>
* Raise informative error on empty files (pr/611) (Pradeep
Raamana, reviewed<br>
by CM, MB)<br>
* Accept degenerate filenames such as ``.nii`` (pr/621)
(Dimitri<br>
Papadopoulos-Orfanos, reviewed by Yaroslav Halchenko)<br>
* Take advantage of ``IndexedGzipFile`` ``drop_handles``
flag to release<br>
filehandles by default (pr/614) (Paul McCarthy, reviewed
by CM, MB)<br>
<br>
Bug fixes<br>
---------<br>
* Preserve first point of `LazyTractogram` (pr/588) (MC,
reviewed by Nil<br>
Goyette, CM, MB)<br>
* Stop adding extraneous metadata padding (pr/593) (Jon
Stutters, reviewed by<br>
CM, MB)<br>
* Accept lower-case orientation codes in TRK files (pr/600)
(Kesshi Jordan,<br>
MB, reviewed by MB, MC, CM)<br>
* Annotation file reading (pr/592) (Paul McCarthy, reviewed
by CM, MB)<br>
* Fix buffer size calculation in ArraySequence (pr/597)
(Serge Koudoro,<br>
reviewed by MC, MB, Eleftherios Garyfallidis, CM)<br>
* Resolve ``UnboundLocalError`` in Python 3 (pr/607) (Jakub
Kaczmarzyk,<br>
reviewed by MB, CM)<br>
* Do not crash on non-``ImportError`` failures in optional
imports (pr/618)<br>
(Yaroslav Halchenko, reviewed by CM)<br>
* Return original array from ``get_fdata`` for array image,
if no cast<br>
required (pr/638, MB, reviewed by CM)<br>
<br>
Maintenance<br>
-----------<br>
* Use SSH address to use key-based auth (pr/587) (CM,
reviewed by MB)<br>
* Fix doctests for numpy 1.14 array printing (pr/591) (MB,
reviewed by CM)<br>
* Refactor for pydicom 1.0 API changes (pr/599) (MB,
reviewed by CM)<br>
* Increase test coverage, remove unreachable code (pr/602)
(CM, reviewed by <br>
Yaroslav Halchenko, MB)<br>
* Move ``nib-ls`` and other programs to a new cmdline module
(pr/601, pr/615)<br>
(Chris Cheng, reviewed by MB, Yaroslav Halchenko)<br>
* Remove deprecated numpy indexing (EL, reviewed by CM)<br>
* Update documentation to encourage ``get_fdata`` over
``get_data`` (pr/637,<br>
MB, reviewed by CM)<br>
<br>
API changes and deprecations<br>
----------------------------<br>
* Support for ``keep_file_open = 'auto'`` as a parameter to
``Opener()`` will<br>
be deprecated in 2.4, for removal in 3.0. Accordingly,
support for<br>
``openers.KEEP_FILE_OPEN_DEFAULT = 'auto'`` will be
dropped on the same<br>
schedule.<br>
* Drop-in support for ``indexed_gzip < 0.7`` has been
removed.</div>
</div>
<div><br>
</div>
<div><br>
</div>
<p style="margin-top:0;margin-bottom:0">Enjoy,</p>
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<p>-- </p>
<p>Chris Markiewicz</p>
<p>Center for Reproducible Neuroscience</p>
<p>Stanford University</p>
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