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<p class="MsoNormal"><span style="font-size:11.0pt">Respected Professor</span> Olivier,<o:p></o:p></p>
<p class="MsoNormal">Hi,<o:p></o:p></p>
<p class="MsoNormal">Can you kindly let me whether this job is available for working remotely? I mean, is it necessary for someone to be in Paris to undertake this job? or someone from around the world can avail this job opportunity and work remotely? Thanks
for anticipated response.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Regards<o:p></o:p></p>
<p class="MsoNormal">Qasim<o:p></o:p></p>
<p class="MsoNormal">PhD scholar<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:EN-AU">From:</span></b><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:EN-AU"> Neuroimaging <neuroimaging-bounces+syedqasim.abbas=latrobe.edu.au@python.org>
<b>On Behalf Of </b>Olivier Colliot<br>
<b>Sent:</b> Wednesday, 9 September 2020 8:09 PM<br>
<b>To:</b> neuroimaging@python.org<br>
<b>Subject:</b> [Neuroimaging] Job offer - Lead developer - Brain Image Analysis (Paris, France)<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal" style="margin-bottom:12.0pt">Hello,<br>
<br>
We are recruiting a lead developer for the open source neuroimaging software platform Clinica (<a href="http://www.clinica.run">www.clinica.run</a>).<br>
Could you please help us circulate the job offer?<br>
<br>
Thanks in avance <br>
Olivier Colliot<br>
<a href="mailto:olivier.colliot@sorbonne-universite.fr">olivier.colliot@sorbonne-universite.fr</a><span style="font-size:11.0pt;mso-fareast-language:EN-AU"><o:p></o:p></span></p>
<p class="MsoNormal" align="center" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:center">
<b><span lang="EN-US" style="font-size:16.0pt">JOB OFFER </span></b><o:p></o:p></p>
<p class="MsoNormal" align="center" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:center">
<b><span lang="EN-US" style="font-size:16.0pt"> </span></b><o:p></o:p></p>
<p class="MsoNormal" align="center" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:center">
<b><span lang="EN-US" style="font-size:16.0pt">Lead software developer</span></b><o:p></o:p></p>
<p class="MsoNormal" align="center" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:center">
<b><span lang="EN-US" style="font-size:16.0pt;color:#732281">Brain image analysis</span></b><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<b><span lang="EN-US" style="color:#732281">Keywords:</span></b><span lang="EN-US" style="color:#732281">
</span><span lang="EN-US">Python, neuroimaging, image analysis, medical imaging</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<b><span lang="EN-US" style="color:#732281">The topic: Clinica – Open Source software for brain image analysis</span></b><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<span lang="EN-US">The ARAMIS lab develops the Open Source software Clinica (</span><a href="http://www.clinica.run"><span lang="EN-US">www.clinica.run</span></a><span lang="EN-US">), an end-to-end solution
for brain image analysis. Clinica allows users to easily analyze large-scale clinical studies with advanced computational tools. To that purpose, it integrates tools for data management, image preprocessing for different modalities (anatomical MRI, diffusion
MRI, PET), feature extraction, machine learning and statistics. Clinica is distributed freely to the scientific community and has 400+ users worldwide. It has been used to produce high impact medical publications which have advanced the understanding of neurodegenerative
diseases such as Alzheimer’s disease, fronto-temporal dementia and amyotrophic lateral sclerosis. It is also widely used by researchers who apply machine learning to the diagnosis of brain diseases.
</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:36.0pt;text-align:justify;text-indent:-18.0pt">
<span lang="EN-US" style="font-size:10.5pt;font-family:"Arial",sans-serif">-</span><span lang="EN-US" style="font-size:7.0pt;font-family:"Times New Roman",serif">
</span><span lang="EN-US" style="font-size:10.5pt">Samper-González J, Burgos N, Bottani S, ..., Durrleman S, Evgeniou T, Colliot O, Reproducible evaluation of classification methods in Alzheimer’s disease: Framework and application to MRI and PET data.
</span><b><i><span lang="EN-US" style="font-size:10.5pt">NeuroImage</span></i></b><span lang="EN-US" style="font-size:10.5pt">, 183:504–21,2018.
</span><o:p></o:p></p>
<p class="MsoListParagraph" style="text-indent:-18.0pt"><span lang="EN-US" style="font-size:10.5pt;font-family:"Arial",sans-serif;mso-fareast-language:EN-US">-</span><span lang="EN-US" style="font-size:7.0pt;mso-fareast-language:EN-US">
</span><span lang="EN-US" style="font-size:10.5pt;font-family:"Calibri",sans-serif;mso-fareast-language:EN-US">Bertrand A, Wen J, Rinaldi D, Houot M, Sayah S, Camuzat A, Fournier C, Fontanella S, Routier A, Couratier P, Pasquier F, Habert M-O, Hannequin D,
Martinaud O, Caroppo P, Levy R, Dubois B, Brice A, Durrleman S, Colliot O, and Le Ber I, Early cognitive, structural and microstructural changes in c9orf72 presymptomatic carriers before 40 years of age,
<b>JAMA Neurology</b>, 75(2):236-245, 2018</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;margin-left:36.0pt;text-align:justify;text-indent:-18.0pt">
<span lang="EN-US" style="font-size:10.5pt;font-family:"Arial",sans-serif">-</span><span lang="EN-US" style="font-size:7.0pt;font-family:"Times New Roman",serif">
</span><span lang="EN-US" style="font-size:10.5pt">Wen J, Thibeau-Sutre E, Diaz-Melo M, …, Durrleman S, Burgos N, Colliot O, Convolutional Neural Networks for Classification of Alzheimer’s Disease: Overview and Reproducible Evaluation.
</span><b><i><span lang="EN-US" style="font-size:10.5pt">Medical Image Analysis</span></i></b><span lang="EN-US" style="font-size:10.5pt">, 63: 101694, 2020</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<b><span lang="EN-US" style="color:#732281">Your mission</span></b><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<span lang="EN-US">You will be the lead software developer of Clinica. As such, you will be in charge of:</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<span lang="EN-US">- development of new features (image processing pipelines, traceability, visualization),</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<span lang="EN-US">- validation of new analytic tools,</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<span lang="EN-US">- project management (task follow-up, issue tracking, meeting organization),</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<span lang="EN-US">- software maintenance,</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<span lang="EN-US">- user support and animation of the community</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<span lang="EN-US">- contribution to training and dissemination organized with the other engineers of the Inria center</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<span lang="EN-US">In addition, you will be presenting the software at international scientific conferences and other events (organized for instance by Inria, ICM, CNRS…). Finally, you will contribute to ambitious medical studies, by deploying Clinica on large
databases of patients, contributing to the interpretation of results and providing assistance to medical users (internal to the lab and external collaborators).</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<b><span lang="EN-US" style="color:#732281">A vibrant scientific, technological, clinical and ethical environment</span></b><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<span lang="EN-US">You will work within the ARAMIS lab (</span><a href="http://www.aramislab.fr"><span lang="EN-US">www.aramislab.fr</span></a><span lang="EN-US">) at the Paris Brain Institute (</span><a href="http://www.icm-institute.org"><span lang="EN-US">http://www.icm-institute.org</span></a><span lang="EN-US">),
one of the world top research institutes for neurosciences. The institute is ideally located at the heart of the Pitié-Salpêtrière hospital, downtown Paris.
</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify;text-indent:35.4pt">
<span lang="EN-US">The ARAMIS lab, which is also part of Inria (the French National Institute for Research in Digital Science and Technology), is dedicated to the development of new computational approaches for the analysis of large neuroimaging and clinical
data sets. </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify;text-indent:35.4pt">
<span lang="EN-US">You will be strongly involved in scientific aspects of the work, such as discussion of methodological issues and interpretation of results. You will interact locally with the PhD students, postdoctoral fellows and engineers of the ARAMIS
lab, as well as our medical collaborators. You will take part in the communications and publications resulting from the use of the software.
</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<b><span lang="EN-US" style="color:#732281">Your profile</span></b><span lang="EN-US" style="color:#732281">
</span><o:p></o:p></p>
<p class="MsoListParagraphCxSpFirst" style="margin-left:18.0pt;mso-add-space:auto;text-align:justify;text-indent:-18.0pt">
<span lang="EN-US">-</span><span lang="EN-US" style="font-size:7.0pt"> </span>
<span lang="EN-US" style="font-family:"Calibri",sans-serif">PhD degree or Master+experience in the field of medical imaging
</span><o:p></o:p></p>
<p class="MsoListParagraphCxSpMiddle" style="margin-left:18.0pt;mso-add-space:auto;text-align:justify;text-indent:-18.0pt">
<span lang="EN-US">-</span><span lang="EN-US" style="font-size:7.0pt"> </span>
<span lang="EN-US" style="font-family:"Calibri",sans-serif">Strong programming skills in Python</span><o:p></o:p></p>
<p class="MsoListParagraphCxSpMiddle" style="margin-left:18.0pt;mso-add-space:auto;text-align:justify;text-indent:-18.0pt">
<span lang="EN-US">-</span><span lang="EN-US" style="font-size:7.0pt"> </span>
<span lang="EN-US" style="font-family:"Calibri",sans-serif">Knowledge of digital image processing and medical imaging is mandatory</span><o:p></o:p></p>
<p class="MsoListParagraphCxSpMiddle" style="margin-left:18.0pt;mso-add-space:auto;text-align:justify;text-indent:-18.0pt">
<span lang="EN-US">-</span><span lang="EN-US" style="font-size:7.0pt"> </span>
<span lang="EN-US" style="font-family:"Calibri",sans-serif">Experience with neuroimaging data (and with neuroimage analysis software, e.g. Nipype, SPM, Freesurfer) would be a strong plus</span><o:p></o:p></p>
<p class="MsoListParagraphCxSpMiddle" style="margin-left:18.0pt;mso-add-space:auto;text-align:justify;text-indent:-18.0pt">
<span lang="EN-US">-</span><span lang="EN-US" style="font-size:7.0pt"> </span>
<span lang="EN-US" style="font-family:"Calibri",sans-serif">Good understanding of the software development process and tools (Git, continuous integration, tests)</span><o:p></o:p></p>
<p class="MsoListParagraphCxSpMiddle" style="margin-left:18.0pt;mso-add-space:auto;text-align:justify;text-indent:-18.0pt">
<span lang="EN-US">-</span><span lang="EN-US" style="font-size:7.0pt"> </span>
<span lang="EN-US" style="font-family:"Calibri",sans-serif">Excellent planning and organizational skills</span><o:p></o:p></p>
<p class="MsoListParagraphCxSpMiddle" style="margin-left:18.0pt;mso-add-space:auto;text-align:justify;text-indent:-18.0pt">
<span lang="EN-US">-</span><span lang="EN-US" style="font-size:7.0pt"> </span>
<span lang="EN-US" style="font-family:"Calibri",sans-serif">Good writing skills (documentation, website, scientific articles)</span><o:p></o:p></p>
<p class="MsoListParagraphCxSpLast" style="margin-left:18.0pt;mso-add-space:auto;text-align:justify;text-indent:-18.0pt">
<span lang="EN-US">-</span><span lang="EN-US" style="font-size:7.0pt"> </span>
<span lang="EN-US" style="font-family:"Calibri",sans-serif">Good relational and communication skills to interact with users and lab members</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<b><span lang="EN-US" style="color:#732281">Salary: </span></b><span lang="EN-US" style="color:black">depending on experience</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<b><span lang="EN-US" style="color:#732281">Type of contract: </span></b><span lang="EN-US" style="color:black">fixed-term contract
</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<b><span lang="EN-US" style="color:#732281">Ready to take up the challenge? </span>
</b><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;text-align:justify">
<span lang="EN-US">Send your CV to </span><a href="mailto:olivier.colliot@sorbonne-universite.fr"><span lang="EN-US">olivier.colliot@sorbonne-universite.fr</span></a><span lang="EN-US"> and to
<a href="mailto:ninon.burgos@icm-institute.org">ninon.burgos@icm-institute.org</a> .</span><o:p></o:p></p>
<p class="MsoHeader" style="margin-left:318.6pt"><span lang="EN-US" style="color:#732281"> </span><o:p></o:p></p>
<p class="MsoHeader"><span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoHeader"><span lang="EN-US"> </span><o:p></o:p></p>
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