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Hello,<br>
<br>
We are recruiting a lead developer for the open source neuroimaging
software platform Clinica (<a class="moz-txt-link-abbreviated" href="http://www.clinica.run">www.clinica.run</a>).<br>
Could you please help us circulate the job offer?<br>
<br>
Thanks in avance <br>
Olivier Colliot<br>
<a class="moz-txt-link-abbreviated" href="mailto:olivier.colliot@sorbonne-universite.fr">olivier.colliot@sorbonne-universite.fr</a><br>
<br>
<p class="MsoNormal" style="text-align:center" align="center"><b
style="mso-bidi-font-weight:
normal"><span style="font-size:16.0pt;mso-bidi-font-size:12.0pt;
mso-ansi-language:EN-US" lang="EN-US">JOB OFFER </span></b></p>
<p class="MsoNormal" style="text-align:center" align="center"><b
style="mso-bidi-font-weight:
normal"><span style="font-size:16.0pt;mso-bidi-font-size:12.0pt;
mso-ansi-language:EN-US" lang="EN-US"> </span></b></p>
<p class="MsoNormal" style="text-align:center" align="center"><b
style="mso-bidi-font-weight:
normal"><span style="font-size:16.0pt;mso-bidi-font-size:12.0pt;
mso-ansi-language:EN-US" lang="EN-US">Lead software developer</span></b></p>
<p class="MsoNormal" style="text-align:center" align="center"><b
style="mso-bidi-font-weight:
normal"><span style="font-size:16.0pt;mso-bidi-font-size:11.0pt;
color:#732281;mso-ansi-language:EN-US" lang="EN-US">Brain
image analysis</span></b></p>
<p class="MsoNormal" style="text-align:justify"><span
style="font-size:11.0pt;mso-ansi-language:EN-US" lang="EN-US"> </span></p>
<p class="MsoNormal" style="text-align:justify"><span
style="font-size:11.0pt;mso-ansi-language:EN-US" lang="EN-US"> </span></p>
<p class="MsoNormal" style="text-align:justify"><b
style="mso-bidi-font-weight:
normal"><span style="color:#732281;mso-ansi-language:EN-US"
lang="EN-US">Keywords:</span></b><span
style="color:#732281;mso-ansi-language:EN-US" lang="EN-US"> </span><span
style="mso-ansi-language:EN-US" lang="EN-US">Python,
neuroimaging, image
analysis, medical imaging</span><span style="font-size:11.0pt;
mso-ansi-language:EN-US" lang="EN-US"></span></p>
<p class="MsoNormal" style="text-align:justify"><span
style="font-size:11.0pt;mso-ansi-language:EN-US" lang="EN-US"> </span></p>
<p class="MsoNormal" style="text-align:justify"><b
style="mso-bidi-font-weight:
normal"><span style="color:#732281;mso-ansi-language:EN-US"
lang="EN-US">The
topic: Clinica – Open Source software for brain image analysis</span></b></p>
<p class="MsoNormal" style="text-align:justify"><span
style="mso-ansi-language:EN-US" lang="EN-US">The ARAMIS lab
develops the Open Source
software Clinica (</span><a href="http://www.clinica.run"><span
style="mso-ansi-language:EN-US" lang="EN-US">www.clinica.run</span></a><span
style="mso-ansi-language:EN-US" lang="EN-US">), an end-to-end
solution for brain image
analysis. Clinica allows users to easily analyze large-scale
clinical studies
with advanced computational tools. To that purpose, it
integrates tools for
data management, image preprocessing for different modalities
(anatomical MRI,
diffusion MRI, PET), feature extraction, machine learning and
statistics.
Clinica is distributed freely to the scientific community and
has 400+ users
worldwide. It has been used to produce high impact medical
publications which
have advanced the understanding of neurodegenerative diseases
such as
Alzheimer’s disease, fronto-temporal dementia and amyotrophic
lateral
sclerosis. It is also widely used by researchers who apply
machine learning to
the diagnosis of brain diseases. </span></p>
<p class="MsoNormal"
style="margin-left:36.0pt;text-align:justify;text-indent:
-18.0pt;mso-list:l0 level1 lfo2;mso-hyphenate:none"><span
style="font-size:10.5pt;font-family:"Arial",sans-serif;mso-fareast-font-family:Arial;mso-ansi-language:EN-US;mso-bidi-font-style:italic"
lang="EN-US"><span style="mso-list:Ignore">-<span
style="font:7.0pt "Times New Roman"">
</span></span></span><span style="font-size:10.5pt;
mso-bidi-font-family:Calibri;mso-bidi-theme-font:minor-latin;mso-ansi-language:
EN-US;mso-bidi-font-style:italic" lang="EN-US">Samper-González
J, Burgos N, Bottani S, ...,
Durrleman S, Evgeniou T, Colliot O, Reproducible evaluation of
classification
methods in Alzheimer’s disease: Framework and application to MRI
and PET data. </span><b><i style="mso-bidi-font-style:normal"><span
style="font-size:10.5pt;
mso-bidi-font-family:Calibri;mso-bidi-theme-font:minor-latin;mso-ansi-language:
EN-US" lang="EN-US">NeuroImage</span></i></b><span
style="font-size:10.5pt;
mso-bidi-font-family:Calibri;mso-bidi-theme-font:minor-latin;mso-ansi-language:
EN-US;mso-bidi-font-style:italic" lang="EN-US">,
183:504–21,2018. </span></p>
<p class="MsoListParagraph" style="text-indent:-18.0pt;mso-list:l0
level1 lfo2"><span
style="font-size:10.5pt;font-family:"Arial",sans-serif;mso-fareast-font-family:Arial;mso-ansi-language:EN-US;mso-fareast-language:EN-US;mso-bidi-font-style:
italic" lang="EN-US"><span style="mso-list:Ignore">-<span
style="font:7.0pt "Times New Roman"">
</span></span></span><span style="font-size:10.5pt;
font-family:"Calibri",sans-serif;mso-ascii-theme-font:minor-latin;mso-fareast-font-family:
Calibri;mso-fareast-theme-font:minor-latin;mso-hansi-theme-font:minor-latin;
mso-bidi-theme-font:minor-latin;mso-ansi-language:EN-US;mso-fareast-language:
EN-US;mso-bidi-font-style:italic" lang="EN-US">Bertrand A, Wen
J, Rinaldi D, Houot M, Sayah
S, Camuzat A, Fournier C, Fontanella S, Routier A, Couratier P,
Pasquier F,
Habert M-O, Hannequin D, Martinaud O, Caroppo P, Levy R, Dubois
B, Brice A,
Durrleman S, Colliot O, and Le Ber I, Early cognitive,
structural and
microstructural changes in c9orf72 presymptomatic carriers
before 40 years of
age, <b>JAMA Neurology</b>, 75(2):236-245, 2018</span></p>
<p class="MsoNormal"
style="margin-left:36.0pt;text-align:justify;text-indent:
-18.0pt;mso-list:l0 level1 lfo2;mso-hyphenate:none"><span
style="font-size:10.5pt;font-family:"Arial",sans-serif;mso-fareast-font-family:Arial;mso-ansi-language:EN-US;mso-bidi-font-style:italic"
lang="EN-US"><span style="mso-list:Ignore">-<span
style="font:7.0pt "Times New Roman"">
</span></span></span><span style="font-size:10.5pt;
mso-bidi-font-family:Calibri;mso-bidi-theme-font:minor-latin;mso-ansi-language:
EN-US;mso-bidi-font-style:italic" lang="EN-US">Wen J,
Thibeau-Sutre E, Diaz-Melo M, …,
Durrleman S, Burgos N, Colliot O, Convolutional Neural Networks
for
Classification of Alzheimer’s Disease: Overview and Reproducible
Evaluation. </span><b><i style="mso-bidi-font-style:normal"><span
style="font-size:10.5pt;
mso-bidi-font-family:Calibri;mso-bidi-theme-font:minor-latin;mso-ansi-language:
EN-US" lang="EN-US">Medical Image Analysis</span></i></b><span
style="font-size:
10.5pt;mso-bidi-font-family:Calibri;mso-bidi-theme-font:minor-latin;mso-ansi-language:
EN-US;mso-bidi-font-style:italic" lang="EN-US">, 63: 101694,
2020</span></p>
<p class="MsoNormal" style="text-align:justify"><span
style="mso-bidi-font-family:Calibri;mso-bidi-theme-font:minor-latin;mso-ansi-language:EN-US"
lang="EN-US"> </span></p>
<p class="MsoNormal" style="text-align:justify"><b
style="mso-bidi-font-weight:
normal"><span style="color:#732281;mso-ansi-language:EN-US"
lang="EN-US">Your
mission</span></b><span
style="color:#732281;mso-ansi-language:EN-US" lang="EN-US"></span></p>
<p class="MsoNormal" style="text-align:justify"><span
style="mso-ansi-language:EN-US" lang="EN-US">You will be the
lead software developer of
Clinica. As such, you will be in charge of:</span></p>
<p class="MsoNormal" style="text-align:justify"><span
style="mso-ansi-language:EN-US" lang="EN-US">- development of
new features (image processing
pipelines, traceability, visualization),</span></p>
<p class="MsoNormal" style="text-align:justify"><span
style="mso-ansi-language:EN-US" lang="EN-US">- validation of new
analytic tools,</span></p>
<p class="MsoNormal" style="text-align:justify"><span
style="mso-ansi-language:EN-US" lang="EN-US">- project
management (task follow-up, issue
tracking, meeting organization),</span></p>
<p class="MsoNormal" style="text-align:justify"><span
style="mso-ansi-language:EN-US" lang="EN-US">- software
maintenance,</span></p>
<p class="MsoNormal" style="text-align:justify"><span
style="mso-ansi-language:EN-US" lang="EN-US">- user support and
animation of the community</span></p>
<p class="MsoNormal" style="text-align:justify"><span
style="mso-ansi-language:EN-US" lang="EN-US">- contribution to
training and dissemination
organized with the other engineers of the Inria center</span></p>
<p class="MsoNormal" style="text-align:justify"><span
style="mso-ansi-language:EN-US" lang="EN-US">In addition, you
will be presenting the
software at international scientific conferences and other
events (organized
for instance by Inria, ICM, CNRS…). Finally, you will contribute
to ambitious
medical studies, by deploying Clinica on large databases of
patients,
contributing to the interpretation of results and providing
assistance to
medical users (internal to the lab and external collaborators).</span></p>
<p class="MsoNormal" style="text-align:justify"><span
style="font-size:11.0pt;mso-ansi-language:EN-US" lang="EN-US"> </span></p>
<p class="MsoNormal" style="text-align:justify"><b
style="mso-bidi-font-weight:
normal"><span style="color:#732281;mso-ansi-language:EN-US"
lang="EN-US">A
vibrant scientific, technological, clinical and ethical
environment</span></b><span
style="color:#732281;mso-ansi-language:EN-US" lang="EN-US"></span></p>
<p class="MsoNormal" style="text-align:justify"><span
style="mso-ansi-language:EN-US" lang="EN-US">You will work
within the ARAMIS lab (</span><a href="http://www.aramislab.fr"><span
style="mso-ansi-language:EN-US" lang="EN-US">www.aramislab.fr</span></a><span
style="mso-ansi-language:EN-US" lang="EN-US">) at the Paris
Brain Institute (</span><a href="http://www.icm-institute.org"><span
style="mso-ansi-language:
EN-US" lang="EN-US">http://www.icm-institute.org</span></a><span
style="mso-ansi-language:EN-US" lang="EN-US">), one of the world
top research institutes for
neurosciences. The institute is ideally located at the heart of
the
Pitié-Salpêtrière hospital, downtown Paris. </span></p>
<p class="MsoNormal" style="text-align:justify;text-indent:35.4pt"><span
style="mso-ansi-language:EN-US" lang="EN-US">The ARAMIS lab,
which is also part
of Inria (the French National Institute for Research in Digital
Science and
Technology), is dedicated to the development of new
computational approaches
for the analysis of large neuroimaging and clinical data sets. </span></p>
<p class="MsoNormal" style="text-align:justify;text-indent:35.4pt"><span
style="mso-ansi-language:EN-US" lang="EN-US">You will be
strongly involved in
scientific aspects of the work, such as discussion of
methodological issues and
interpretation of results. You will interact locally with the
PhD students,
postdoctoral fellows and engineers of the ARAMIS lab, as well as
our medical collaborators.
You will take part in the communications and publications
resulting from the
use of the software. </span></p>
<p class="MsoNormal" style="text-align:justify"><span
style="mso-ansi-language:EN-US" lang="EN-US"> </span></p>
<p class="MsoNormal" style="text-align:justify"><b
style="mso-bidi-font-weight:
normal"><span style="color:#732281;mso-ansi-language:EN-US"
lang="EN-US">Your
profile</span></b><span
style="color:#732281;mso-ansi-language:EN-US" lang="EN-US">
</span></p>
<p class="MsoListParagraphCxSpFirst"
style="margin-left:18.0pt;mso-add-space:
auto;text-align:justify;text-indent:-18.0pt;mso-list:l1 level1
lfo1"><span
style="font-family:"Calibri",sans-serif;mso-fareast-font-family:Calibri;mso-ansi-language:EN-US"
lang="EN-US"><span style="mso-list:Ignore">-<span
style="font:7.0pt "Times New Roman""> </span></span></span><span
style="font-family:"Calibri",sans-serif;mso-ascii-theme-font:minor-latin;
mso-hansi-theme-font:minor-latin;mso-bidi-font-family:"Times New
Roman";
mso-ansi-language:EN-US" lang="EN-US">PhD degree or
Master+experience in the field of
medical imaging </span></p>
<p class="MsoListParagraphCxSpMiddle"
style="margin-left:18.0pt;mso-add-space:
auto;text-align:justify;text-indent:-18.0pt;mso-list:l1 level1
lfo1"><span
style="font-family:"Calibri",sans-serif;mso-fareast-font-family:Calibri;mso-ansi-language:EN-US"
lang="EN-US"><span style="mso-list:Ignore">-<span
style="font:7.0pt "Times New Roman""> </span></span></span><span
style="font-family:"Calibri",sans-serif;mso-ascii-theme-font:minor-latin;
mso-hansi-theme-font:minor-latin;mso-bidi-font-family:"Times New
Roman";
mso-ansi-language:EN-US" lang="EN-US">Strong programming skills
in Python</span></p>
<p class="MsoListParagraphCxSpMiddle"
style="margin-left:18.0pt;mso-add-space:
auto;text-align:justify;text-indent:-18.0pt;mso-list:l1 level1
lfo1"><span
style="font-family:"Calibri",sans-serif;mso-fareast-font-family:Calibri;mso-ansi-language:EN-US"
lang="EN-US"><span style="mso-list:Ignore">-<span
style="font:7.0pt "Times New Roman""> </span></span></span><span
style="font-family:"Calibri",sans-serif;mso-ascii-theme-font:minor-latin;
mso-hansi-theme-font:minor-latin;mso-bidi-font-family:"Times New
Roman";
mso-ansi-language:EN-US" lang="EN-US">Knowledge of digital image
processing and medical
imaging is mandatory</span></p>
<p class="MsoListParagraphCxSpMiddle"
style="margin-left:18.0pt;mso-add-space:
auto;text-align:justify;text-indent:-18.0pt;mso-list:l1 level1
lfo1"><span
style="font-family:"Calibri",sans-serif;mso-fareast-font-family:Calibri;mso-ansi-language:EN-US"
lang="EN-US"><span style="mso-list:Ignore">-<span
style="font:7.0pt "Times New Roman""> </span></span></span><span
style="font-family:"Calibri",sans-serif;mso-ascii-theme-font:minor-latin;
mso-hansi-theme-font:minor-latin;mso-bidi-font-family:"Times New
Roman";
mso-ansi-language:EN-US" lang="EN-US">Experience with
neuroimaging data (and with neuroimage
analysis software, e.g. Nipype, SPM, Freesurfer) would be a
strong plus</span></p>
<p class="MsoListParagraphCxSpMiddle"
style="margin-left:18.0pt;mso-add-space:
auto;text-align:justify;text-indent:-18.0pt;mso-list:l1 level1
lfo1"><span
style="font-family:"Calibri",sans-serif;mso-fareast-font-family:Calibri;mso-ansi-language:EN-US"
lang="EN-US"><span style="mso-list:Ignore">-<span
style="font:7.0pt "Times New Roman""> </span></span></span><span
style="font-family:"Calibri",sans-serif;mso-ascii-theme-font:minor-latin;
mso-hansi-theme-font:minor-latin;mso-bidi-font-family:"Times New
Roman";
mso-ansi-language:EN-US" lang="EN-US">Good understanding of the
software development process
and tools (Git, continuous integration, tests)</span></p>
<p class="MsoListParagraphCxSpMiddle"
style="margin-left:18.0pt;mso-add-space:
auto;text-align:justify;text-indent:-18.0pt;mso-list:l1 level1
lfo1"><span
style="font-family:"Calibri",sans-serif;mso-fareast-font-family:Calibri;mso-ansi-language:EN-US"
lang="EN-US"><span style="mso-list:Ignore">-<span
style="font:7.0pt "Times New Roman""> </span></span></span><span
style="font-family:"Calibri",sans-serif;mso-ascii-theme-font:minor-latin;
mso-hansi-theme-font:minor-latin;mso-bidi-font-family:"Times New
Roman";
mso-ansi-language:EN-US" lang="EN-US">Excellent planning and
organizational skills</span></p>
<p class="MsoListParagraphCxSpMiddle"
style="margin-left:18.0pt;mso-add-space:
auto;text-align:justify;text-indent:-18.0pt;mso-list:l1 level1
lfo1"><span
style="font-family:"Calibri",sans-serif;mso-fareast-font-family:Calibri;mso-ansi-language:EN-US"
lang="EN-US"><span style="mso-list:Ignore">-<span
style="font:7.0pt "Times New Roman""> </span></span></span><span
style="font-family:"Calibri",sans-serif;mso-ascii-theme-font:minor-latin;
mso-hansi-theme-font:minor-latin;mso-bidi-font-family:"Times New
Roman";
mso-ansi-language:EN-US" lang="EN-US">Good writing skills
(documentation, website,
scientific articles)</span></p>
<p class="MsoListParagraphCxSpLast"
style="margin-left:18.0pt;mso-add-space:auto;
text-align:justify;text-indent:-18.0pt;mso-list:l1 level1 lfo1"><span
style="font-size:11.0pt;font-family:"Calibri",sans-serif;mso-fareast-font-family:
Calibri;mso-ansi-language:EN-US" lang="EN-US"><span
style="mso-list:Ignore">-<span style="font:7.0pt "Times
New Roman"">
</span></span></span><span
style="font-family:"Calibri",sans-serif;
mso-ascii-theme-font:minor-latin;mso-hansi-theme-font:minor-latin;mso-bidi-font-family:
"Times New Roman";mso-ansi-language:EN-US"
lang="EN-US">Good relational and communication
skills to interact with users and lab members</span><span
style="font-size:11.0pt;mso-ansi-language:EN-US" lang="EN-US"></span></p>
<p class="MsoNormal" style="text-align:justify"><span
style="font-size:11.0pt;mso-ansi-language:EN-US" lang="EN-US"> </span></p>
<p class="MsoNormal" style="text-align:justify"><b
style="mso-bidi-font-weight:
normal"><span style="color:#732281;mso-ansi-language:EN-US"
lang="EN-US">Salary: </span></b><span
style="color:black;mso-themecolor:text1;mso-ansi-language:EN-US"
lang="EN-US">depending
on experience</span><span
style="color:#732281;mso-ansi-language:
EN-US" lang="EN-US"></span></p>
<p class="MsoNormal" style="text-align:justify"><b
style="mso-bidi-font-weight:
normal"><span style="color:#732281;mso-ansi-language:EN-US"
lang="EN-US">Type of
contract: </span></b><span
style="color:black;mso-themecolor:text1;
mso-ansi-language:EN-US" lang="EN-US">fixed-term contract </span><span
style="color:#732281;mso-ansi-language:EN-US" lang="EN-US"></span></p>
<p class="MsoNormal" style="text-align:justify"><span
style="font-size:11.0pt;mso-ansi-language:EN-US" lang="EN-US"> </span></p>
<p class="MsoNormal" style="text-align:justify"><b
style="mso-bidi-font-weight:
normal"><span style="color:#732281;mso-ansi-language:EN-US"
lang="EN-US">Ready to
take up the challenge? </span></b></p>
<p class="MsoNormal" style="text-align:justify"><span
style="mso-ansi-language:EN-US" lang="EN-US">Send your CV to </span><a
href="mailto:olivier.colliot@sorbonne-universite.fr"><span
style="mso-ansi-language:EN-US" lang="EN-US">olivier.colliot@sorbonne-universite.fr</span></a><span
style="mso-ansi-language:EN-US" lang="EN-US"> and to <a
href="mailto:ninon.burgos@icm-institute.org">ninon.burgos@icm-institute.org</a>
.</span></p>
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a:link, span.MsoHyperlink
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color:#0563C1;
mso-themecolor:hyperlink;
text-decoration:underline;
text-underline:single;}
a:visited, span.MsoHyperlinkFollowed
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mso-style-priority:99;
color:#954F72;
mso-themecolor:followedhyperlink;
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p.MsoListParagraphCxSpFirst, li.MsoListParagraphCxSpFirst, div.MsoListParagraphCxSpFirst
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p.MsoListParagraphCxSpMiddle, li.MsoListParagraphCxSpMiddle, div.MsoListParagraphCxSpMiddle
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p.MsoListParagraphCxSpLast, li.MsoListParagraphCxSpLast, div.MsoListParagraphCxSpLast
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span.En-tteCar
{mso-style-name:"En-tête Car";
mso-style-priority:99;
mso-style-unhide:no;
mso-style-locked:yes;
mso-style-link:En-tête;}
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mso-default-props:yes;
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margin:70.85pt 70.85pt 70.85pt 70.85pt;
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div.WordSection1
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text-indent:-18.0pt;
font-family:Wingdings;}
ol
{margin-bottom:0cm;}
ul
{margin-bottom:0cm;}</style>
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