It's inside the distutils folder.<br><br>-=- Olivier<br><br><div class="gmail_quote">2011/11/2 akshar bhosale <span dir="ltr"><<a href="mailto:akshar.bhosale@gmail.com">akshar.bhosale@gmail.com</a>></span><br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
thanks..what about site.cfg?<br><br><div class="gmail_quote"><div class="im">On Thu, Nov 3, 2011 at 1:27 AM, Olivier Delalleau <span dir="ltr"><<a href="mailto:shish@keba.be" target="_blank">shish@keba.be</a>></span> wrote:<br>
</div><blockquote class="gmail_quote" style="border-left:1px solid rgb(204, 204, 204);margin:0pt 0pt 0pt 0.8ex;padding-left:1ex"><div class="im">
Sorry, no clue :/<br><br>I made a tarball with my distutils folder here: <a href="http://www.iro.umontreal.ca/%7Edelallea/tmp/distutils.tar.bz2" target="_blank">http://www.iro.umontreal.ca/~delallea/tmp/distutils.tar.bz2</a><br>
Hope this helps...<br>
<br>-=- Olivier<br><br></div><div class="gmail_quote">2011/11/2 akshar bhosale <span dir="ltr"><<a href="mailto:akshar.bhosale@gmail.com" target="_blank">akshar.bhosale@gmail.com</a>></span><br><blockquote class="gmail_quote" style="border-left:1px solid rgb(204, 204, 204);margin:0pt 0pt 0pt 0.8ex;padding-left:1ex">
<div class="im">
<div>
hi,<br>thanks for the reply<br>none of them is linked with libmkl_lapack.so.<br>what can be the problem?<br>libmkl_lapack.so is present in its location. <br><br>if possible, can you send your site.cfg and other related files like intelccompilers.py / system_config.py etc...and configure/build options, i will try the same?<br>
<br></div></div><div class="gmail_quote"><div class="im"><div><div>On Wed, Nov 2, 2011 at 11:51 PM, Olivier Delalleau <span dir="ltr"><<a href="mailto:shish@keba.be" target="_blank">shish@keba.be</a>></span> wrote:<br>
</div></div>
</div><blockquote class="gmail_quote" style="border-left:1px solid rgb(204, 204, 204);margin:0pt 0pt 0pt 0.8ex;padding-left:1ex"><div class="im"><div>
<div>
Hmm that's interesting, it's not linked against libmkl_lapack. On my system with MKL it says:<br><br>ldd linalg/lapack_lite.so<br></div></div></div> libmkl_lapack.so => /opt/intel/mkl/<a href="http://10.1.3.027/lib/em64t/libmkl_lapack.so" target="_blank"><font color="red"><b>MailScanner soupçonne le lien suivant d'être une tentative de fraude de la part de "10.1.3.027" </b></font> <font color="red"><b>MailScanner warning: numerical links are often malicious: 10.1.3.027/lib/em64t/libmkl_lapack.so</b></font></a> (0x00002acf0e25a000)<br>
libmkl_intel_lp64.so => /opt/intel/mkl/<a href="http://10.1.3.027/lib/em64t/libmkl_intel_lp64.so" target="_blank"><font color="red"><b>MailScanner soupçonne le lien suivant d'être une tentative de fraude de la part de "10.1.3.027" </b></font> <font color="red"><b>MailScanner warning: numerical links are often malicious: 10.1.3.027/lib/em64t/libmkl_intel_lp64.so</b></font></a> (0x00002acf0ebb8000)<br>
libmkl_intel_thread.so => /opt/intel/mkl/<a href="http://10.1.3.027/lib/em64t/libmkl_intel_thread.so" target="_blank"><font color="red"><b>MailScanner soupçonne le lien suivant d'être une tentative de fraude de la part de "10.1.3.027" </b></font> <font color="red"><b>MailScanner warning: numerical links are often malicious: 10.1.3.027/lib/em64t/libmkl_intel_thread.so</b></font></a> (0x00002acf0ef2e000)<br>
libmkl_def.so => /opt/intel/mkl/<a href="http://10.1.3.027/lib/em64t/libmkl_def.so" target="_blank"><font color="red"><b>MailScanner soupçonne le lien suivant d'être une tentative de fraude de la part de "10.1.3.027" </b></font> <font color="red"><b>MailScanner warning: numerical links are often malicious: 10.1.3.027/lib/em64t/libmkl_def.so</b></font></a> (0x00002acf0fc93000)<br>
libmkl_core.so => /opt/intel/mkl/<a href="http://10.1.3.027/lib/em64t/libmkl_core.so" target="_blank"><font color="red"><b>MailScanner soupçonne le lien suivant d'être une tentative de fraude de la part de "10.1.3.027" </b></font> <font color="red"><b>MailScanner warning: numerical links are often malicious: 10.1.3.027/lib/em64t/libmkl_core.so</b></font></a> (0x00002acf1080e000)<div>
<div></div><div class="h5"><div>
<div></div><div><div>
<div></div><div><br>
libguide.so => /opt/intel/cce/10.1.026/lib/libguide.so (0x00002acf10a03000)<br> libpthread.so.0 => /lib64/libpthread.so.0 (0x00002acf10ba6000)<br> libm.so.6 => /lib64/libm.so.6 (0x00002acf10dc1000)<br>
libpython2.6.so.1.0 => /opt/python64/2.6.4/lib/libpython2.6.so.1.0 (0x00002acf11044000)<br> libc.so.6 => /lib64/libc.so.6 (0x00002acf113f3000)<br> libdl.so.2 => /lib64/libdl.so.2 (0x00002acf1174b000)<br>
/lib64/ld-linux-x86-64.so.2 (0x0000003d90400000)<br> libutil.so.1 => /lib64/libutil.so.1 (0x00002acf1194f000)<br><br>So to clarify, what I was trying to achieve is find which of numpy's shared libraries was trying to load libmkl_lapack.so, and if it could be found properly with ldd. Just to make sure it's not another .so, can you run from within your numpy directory:<br>
find -name "*.so" -exec ldd \{} \; | grep lapack<br><br>If the output is not empty, try to run ldd on all .so within numpy to see which one is linked against libmkl_lapack.so. Then hopefully something will stand out (I admit that's not guaranteed though ;).<div>
<div></div><div><br>
<br>-=- Olivier<br><br><div class="gmail_quote">2011/11/2 akshar bhosale <span dir="ltr"><<a href="mailto:akshar.bhosale@gmail.com" target="_blank">akshar.bhosale@gmail.com</a>></span><br><blockquote class="gmail_quote" style="border-left:1px solid rgb(204, 204, 204);margin:0pt 0pt 0pt 0.8ex;padding-left:1ex">
Hi,<br><br>ldd Python-2.6/lib/python2.6/site-packages/numpy/linalg/lapack_lite.so <br> libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x00002b1199349000)<br> libmkl_def.so => /opt/intel/Compiler/11.0/069/mkl/lib/em64t/libmkl_def.so (0x00002b1199653000)<br>
libmkl_intel_lp64.so => /opt/intel/Compiler/11.0/069/mkl/lib/em64t/libmkl_intel_lp64.so (0x00002b119a1a8000)<br> libmkl_intel_thread.so => /opt/intel/Compiler/11.0/069/mkl/lib/em64t/libmkl_intel_thread.so (0x00002b119a503000)<br>
libmkl_core.so => /opt/intel/Compiler/11.0/069/mkl/lib/em64t/libmkl_core.so (0x00002b119b22c000)<br> libmkl_mc.so => /opt/intel/Compiler/11.0/069/mkl/lib/em64t/libmkl_mc.so (0x00002b119b420000)<br> libpthread.so.0 => /lib64/libpthread.so.0 (0x00002b119c176000)<br>
libimf.so => /opt/intel/Compiler/11.0/069/lib/intel64/libimf.so (0x00002b119c392000)<br> libsvml.so => /opt/intel/Compiler/11.0/069/lib/intel64/libsvml.so (0x00002b119c6e9000)<br> libm.so.6 => /lib64/libm.so.6 (0x00002b119c8a6000)<br>
libiomp5.so => /opt/intel/Compiler/11.0/069/lib/intel64/libiomp5.so (0x00002b119cb2b000)<br> libintlc.so.5 => /opt/intel/Compiler/11.0/069/lib/intel64/libintlc.so.5 (0x00002b119ccbc000)<br> libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00002b119cdf9000)<br>
libc.so.6 => /lib64/libc.so.6 (0x00002b119d007000)<br> libdl.so.2 => /lib64/libdl.so.2 (0x00002b119d37e000)<br> /lib64/ld-linux-x86-64.so.2 (0x0000003fb8000000)<div><div></div><div><br><br><br>
<div class="gmail_quote">On Wed, Nov 2, 2011 at 11:26 PM, Olivier Delalleau <span dir="ltr"><<a href="mailto:shish@keba.be" target="_blank">shish@keba.be</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left:1px solid rgb(204, 204, 204);margin:0pt 0pt 0pt 0.8ex;padding-left:1ex">Doh I'm sorry, I forgot the problem was with lapack, what about ldd numpy/linalg/lapack_lite.so?<div>
<div></div><div><br><br><div class="gmail_quote">2011/11/2 akshar bhosale <span dir="ltr"><<a href="mailto:akshar.bhosale@gmail.com" target="_blank">akshar.bhosale@gmail.com</a>></span><br>
<blockquote class="gmail_quote" style="border-left:1px solid rgb(204, 204, 204);margin:0pt 0pt 0pt 0.8ex;padding-left:1ex">Hi,<br>ldd _dotblas.so<br>libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x00002b12f0692000)<br>
libmkl_def.so => /opt/intel/Compiler/11.0/069/mkl/lib/em64t/libmkl_def.so (0x00002b12f099c000)<br>
libmkl_intel_lp64.so => /opt/intel/Compiler/11.0/069/mkl/lib/em64t/libmkl_intel_lp64.so (0x00002b12f14f1000)<br>
libmkl_intel_thread.so => /opt/intel/Compiler/11.0/069/mkl/lib/em64t/libmkl_intel_thread.so (0x00002b12f184c000)<br> libmkl_core.so => /opt/intel/Compiler/11.0/069/mkl/lib/em64t/libmkl_core.so (0x00002b12f2575000)<br>
libmkl_mc.so => /opt/intel/Compiler/11.0/069/mkl/lib/em64t/libmkl_mc.so (0x00002b12f2769000)<br> libpthread.so.0 => /lib64/libpthread.so.0 (0x00002b12f34bf000)<br> libimf.so => /opt/intel/Compiler/11.0/069/lib/intel64/libimf.so (0x00002b12f36db000)<br>
libsvml.so => /opt/intel/Compiler/11.0/069/lib/intel64/libsvml.so (0x00002b12f3a32000)<br> libm.so.6 => /lib64/libm.so.6 (0x00002b12f3bef000)<br> libiomp5.so => /opt/intel/Compiler/11.0/069/lib/intel64/libiomp5.so (0x00002b12f3e74000)<br>
libintlc.so.5 => /opt/intel/Compiler/11.0/069/lib/intel64/libintlc.so.5 (0x00002b12f4005000)<br> libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00002b12f4142000)<br> libc.so.6 => /lib64/libc.so.6 (0x00002b12f4350000)<br>
libdl.so.2 => /lib64/libdl.so.2 (0x00002b12f46c7000)<br> /lib64/ld-linux-x86-64.so.2 (0x0000003fb8000000)<div><div></div><div><br><br><br><div class="gmail_quote">On Wed, Nov 2, 2011 at 10:14 PM, Olivier Delalleau <span dir="ltr"><<a href="mailto:shish@keba.be" target="_blank">shish@keba.be</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left:1px solid rgb(204, 204, 204);margin:0pt 0pt 0pt 0.8ex;padding-left:1ex">Ok, can you print the output of ldd numpy/core/_dotblas.so?<div><div></div><div><br>
<br>-=- Olivier<br><br><div class="gmail_quote">2011/11/2 akshar bhosale <span dir="ltr"><<a href="mailto:akshar.bhosale@gmail.com" target="_blank">akshar.bhosale@gmail.com</a>></span><br>
<blockquote class="gmail_quote" style="border-left:1px solid rgb(204, 204, 204);margin:0pt 0pt 0pt 0.8ex;padding-left:1ex">HI,<br>It is already added in the LD_LIBRARY_PATH, thenalso it is generating the same error.<div>
<div></div><div>
<br><br><div class="gmail_quote">On Wed, Nov 2, 2011 at 10:01 PM, Olivier Delalleau <span dir="ltr"><<a href="mailto:shish@keba.be" target="_blank">shish@keba.be</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left:1px solid rgb(204, 204, 204);margin:0pt 0pt 0pt 0.8ex;padding-left:1ex">Locate your libmkl_lapack.so and try to add the directory that contains it to your LD_LIBRARY_PATH environment variable.<br>
<br>-=- Olivier<br><br><div class="gmail_quote">2011/11/2 akshar bhosale <span dir="ltr"><<a href="mailto:akshar.bhosale@gmail.com" target="_blank">akshar.bhosale@gmail.com</a>></span><br>
<blockquote class="gmail_quote" style="border-left:1px solid rgb(204, 204, 204);margin:0pt 0pt 0pt 0.8ex;padding-left:1ex"><div><div></div><div>Hi,<br><br>i am getting following error.<br>
python -c 'import numpy;numpy.matrix([[1, 5, 10], [1.0, 3j, 4]],<br>
numpy.complex128).T.I.H'<br>
MKL FATAL ERROR: Cannot load libmkl_lapack.so<br><br>
have installed numpy 1.6.0 with python 2.6.<br>
i have intel cluster toolkit installed on my system. (11/069 version
and mlk=10.1). i have machine having intel xeon processor and rhel 5.2
x86_64<br>
platform. <br>Kindly help<br>
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