<span style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">Hello!</span><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">
<br></div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">I am trying to build numpy 1.6.2 with python 2.7 in Ubuntu 12.04 and wish to link against serial ATLAS rather than the threaded version. I have modified site.cfg accordingly by uncommenting out the following lines:</div>
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<div>[blas_opt]</div><div>libraries = f77blas, cblas, atlas</div><div><br></div><div>[lapack_opt]</div><div>libraries = lapack, f77blas, cblas, atlas</div><div><br></div></div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">
<br></div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">However when I run python setup.py build it still links to the threaded versions eg.</div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">
<br></div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)"><div>python setup.py build</div><div>Running from numpy source directory.F2PY Version 2</div><div>blas_opt_info:</div>
<div>blas_mkl_info:</div><div> libraries mkl,vml,guide not found in /usr/local/lib</div><div> libraries mkl,vml,guide not found in /usr/lib</div><div> NOT AVAILABLE</div><div><br></div><div>atlas_blas_threads_info:</div>
<div>Setting PTATLAS=ATLAS</div><div> libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib</div><div>Setting PTATLAS=ATLAS</div><div>customize GnuFCompiler</div><div>Could not locate executable g77</div><div>Could not locate executable f77</div>
<div>customize IntelFCompiler</div><div>Could not locate executable ifort</div><div>Could not locate executable ifc</div><div>customize LaheyFCompiler</div><div>Could not locate executable lf95</div><div>customize PGroupFCompiler</div>
<div>Could not locate executable pgfortran</div><div>customize AbsoftFCompiler</div><div>Could not locate executable f90</div><div>customize NAGFCompiler</div><div>Found executable /usr/bin/f95</div><div>customize VastFCompiler</div>
<div>customize CompaqFCompiler</div><div>Could not locate executable fort</div><div>customize IntelItaniumFCompiler</div><div>Could not locate executable efort</div><div>Could not locate executable efc</div><div>customize IntelEM64TFCompiler</div>
<div>customize Gnu95FCompiler</div><div>Found executable /usr/bin/gfortran</div><div>customize Gnu95FCompiler</div><div>customize Gnu95FCompiler using config</div><div>compiling '_configtest.c':</div><div><br></div>
<div>/* This file is generated from numpy/distutils/system_info.py */</div><div>void ATL_buildinfo(void);</div><div>int main(void) {</div><div> ATL_buildinfo();</div><div> return 0;</div><div>}</div><div><br></div><div>
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC</div><div><br></div><div>compile options: '-c'</div><div>gcc: _configtest.c</div><div>gcc -pthread _configtest.o -L/usr/lib/atlas-base -lptf77blas -lptcblas -latlas -o _configtest</div>
<div>ATLAS version 3.8.4 built by buildd on Sat Sep 10 23:12:12 UTC 2011:</div><div> UNAME : Linux crested 2.6.24-29-server #1 SMP Wed Aug 10 15:58:57 UTC 2011 x86_64 x86_64 x86_64 GNU/Linux</div><div> INSTFLG : -1 0 -a 1</div>
<div> ARCHDEFS : -DATL_OS_Linux -DATL_ARCH_HAMMER -DATL_CPUMHZ=1993 -DATL_USE64BITS -DATL_GAS_x8664</div><div> F2CDEFS : -DAdd_ -DF77_INTEGER=int -DStringSunStyle</div><div> CACHEEDGE: 393216</div><div> F77 : gfortran, version GNU Fortran (Ubuntu/Linaro 4.6.1-9ubuntu2) 4.6.1</div>
<div> F77FLAGS : -fomit-frame-pointer -mfpmath=387 -O2 -falign-loops=4 -Wa,--noexecstack -fPIC -m64</div><div> SMC : gcc, version gcc (Ubuntu/Linaro 4.6.1-9ubuntu2) 4.6.1</div><div> SMCFLAGS : -fomit-frame-pointer -mfpmath=387 -O2 -falign-loops=4 -Wa,--noexecstack -fPIC -m64</div>
<div> SKC : gcc, version gcc (Ubuntu/Linaro 4.6.1-9ubuntu2) 4.6.1</div><div> SKCFLAGS : -fomit-frame-pointer -mfpmath=387 -O2 -falign-loops=4 -Wa,--noexecstack -fPIC -m64</div><div>success!</div><div>removing: _configtest.c _configtest.o _configtest</div>
<div>Setting PTATLAS=ATLAS</div><div> FOUND:</div><div> libraries = ['ptf77blas', 'ptcblas', 'atlas']</div><div> library_dirs = ['/usr/lib/atlas-base']</div><div> language = c</div>
<div> define_macros = [('ATLAS_INFO', '"\\"3.8.4\\""')]</div><div> include_dirs = ['/usr/include/atlas']</div><div><br></div><div> FOUND:</div><div> libraries = ['ptf77blas', 'ptcblas', 'atlas']</div>
<div> library_dirs = ['/usr/lib/atlas-base']</div><div> language = c</div><div> define_macros = [('ATLAS_INFO', '"\\"3.8.4\\""')]</div><div> include_dirs = ['/usr/include/atlas']</div>
<div><br></div><div>lapack_opt_info:</div><div>lapack_mkl_info:</div><div>mkl_info:</div><div> libraries mkl,vml,guide not found in /usr/local/lib</div><div> libraries mkl,vml,guide not found in /usr/lib</div><div> NOT AVAILABLE</div>
<div><br></div><div> NOT AVAILABLE</div><div><br></div><div>atlas_threads_info:</div><div>Setting PTATLAS=ATLAS</div><div> libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib</div><div> libraries lapack_atlas not found in /usr/local/lib</div>
<div> libraries lapack not found in /usr/lib/atlas-base</div><div>numpy.distutils.system_info.atlas_threads_info</div><div>Setting PTATLAS=ATLAS</div><div>Setting PTATLAS=ATLAS</div><div> FOUND:</div><div> libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']</div>
<div> library_dirs = ['/usr/lib/atlas-base/atlas', '/usr/lib/atlas-base']</div><div> language = f77</div><div> define_macros = [('ATLAS_INFO', '"\\"3.8.4\\""')]</div>
<div> include_dirs = ['/usr/include/atlas']</div><div><br></div><div> FOUND:</div><div> libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']</div><div> library_dirs = ['/usr/lib/atlas-base/atlas', '/usr/lib/atlas-base']</div>
<div> language = f77</div><div> define_macros = [('ATLAS_INFO', '"\\"3.8.4\\""')]</div><div> include_dirs = ['/usr/include/atlas']</div></div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">
<br></div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">...</div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">
<br></div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">Any ideas?</div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">
<br></div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">best,</div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">
<br></div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">Jared</div>