<div dir="ltr">I switched to numpy-1.8.2. . Now getting following error. I am using LAPACK that comes with atlast installation. Can this be a problem?<br><div><br>Traceback (most recent call last):<br> File "<stdin>", line 1, in <module><br> File "/home/svu/a0095654/.local/lib/python2.7/site-packages/numpy/__init__.py", line 170, in <module><br> from . import add_newdocs<br> File "/home/svu/a0095654/.local/lib/python2.7/site-packages/numpy/add_newdocs.py", line 13, in <module><br> from numpy.lib import add_newdoc<br> File "/home/svu/a0095654/.local/lib/python2.7/site-packages/numpy/lib/__init__.py", line 18, in <module><br> from .polynomial import *<br> File "/home/svu/a0095654/.local/lib/python2.7/site-packages/numpy/lib/polynomial.py", line 19, in <module><br> from numpy.linalg import eigvals, lstsq, inv<br> File "/home/svu/a0095654/.local/lib/python2.7/site-packages/numpy/linalg/__init__.py", line 51, in <module><br> from .linalg import *<br> File "/home/svu/a0095654/.local/lib/python2.7/site-packages/numpy/linalg/linalg.py", line 29, in <module><br> from numpy.linalg import lapack_lite, _umath_linalg<br>ImportError: /home/svu/a0095654/.local/lib/python2.7/site-packages/numpy/linalg/lapack_lite.so: undefined symbol: zgesdd_<br></div></div><div class="gmail_extra"><br><div class="gmail_quote">On Sat, Oct 11, 2014 at 1:30 AM, Julian Taylor <span dir="ltr"><<a href="mailto:jtaylor.debian@googlemail.com" target="_blank">jtaylor.debian@googlemail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><span class="">On 10.10.2014 19:26, Lahiru Samarakoon wrote:<br>
> Red Hat Enterprise Linux release 5.8<br>
> gcc (GCC) 4.1.2<br>
><br>
> I am also trying to install numpy 1.9.<br>
<br>
</span>that is the broken platform, please try the master branch or the<br>
maintenance/1.9.x branch, those should work now.<br>
<br>
Are there volunteers to report this to redhat?<br>
<span class=""><br>
><br>
> On Sat, Oct 11, 2014 at 12:59 AM, Julian Taylor<br>
</span>> <<a href="mailto:jtaylor.debian@googlemail.com">jtaylor.debian@googlemail.com</a> <mailto:<a href="mailto:jtaylor.debian@googlemail.com">jtaylor.debian@googlemail.com</a>>><br>
<div class="HOEnZb"><div class="h5">> wrote:<br>
><br>
> On 10.10.2014 18:51, Lahiru Samarakoon wrote:<br>
> > Dear all,<br>
> ><br>
> > I am trying to install numpy without root access. So I am building from<br>
> > the source. I have installed atlas which also has lapack with it. I<br>
> > changed the site.cfg file as given below<br>
> ><br>
> > [DEFAULT]<br>
> > library_dirs = /home/svu/a0095654/ATLAS/build/lib<br>
> > include_dirs = /home/svu/a0095654/ATLAS/build/include<br>
> ><br>
> ><br>
> > However, I am getting a segmentation fault when importing numpy.<br>
> ><br>
> > Please advise. I also put the build log file at the end of the email if<br>
> > necessary.<br>
><br>
><br>
> Which platform are you working on? Which compiler version?<br>
> We just solved a segfault on import on red hat 5 gcc 4.1.2. Very likely<br>
> caused by a compiler bug. See <a href="https://github.com/numpy/numpy/issues/5163" target="_blank">https://github.com/numpy/numpy/issues/5163</a><br>
><br>
> The build log is complaining about your atlas being to small, possibly<br>
> the installation is broken?<br>
><br>
><br>
<br>
</div></div></blockquote></div><br></div>