border artefacts with skimage.exposure.equalize_adapthist
Kai Wiechen
kwiechen1 at gmail.com
Sat Jan 24 06:46:23 EST 2015
<https://lh3.googleusercontent.com/-JDkNXe7k44s/VMOE-xwgPXI/AAAAAAAABLA/STWxQlQkU9Q/s1600/nuclei.jpg>
<https://lh3.googleusercontent.com/-sgqpXIXHhF0/VMOFDbcK8sI/AAAAAAAABLI/iHcFERpbFfc/s1600/nuclei_clahe.jpg>
Hello,
I am new to scikit-image (and python too), but found the combination of
scikit-image implementation of algorithms together with ndarrays extremely
powerful.
For now, I am trying to find nuclei in microscopic images (color
deconvolution, find seeds with blob_log) This works fairly well but due to
low contrast some nuclei are not detected.
nuclei_clahe = equalize_adapthist(nuclei)
gives much better local contrast but introduces linear artefacts at the
test image borders. Is it possible to avoid/reduce this?
Best regards,
Kai
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