[SciPy-user] Error with 0.5.1 tests
Willi Richert
w.richert at gmx.net
Tue Oct 24 04:12:06 EDT 2006
Hi,
I installed numpy-1.0rc3 and scipy. At the python shell I did scipy.test() and got:
======================================================================
ERROR: Solve: single precision complex
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.4/site-packages/scipy/linsolve/umfpack/tests/test_umfpack.py", line 25, in check_solve_complex_without_umfpack
x = linsolve.spsolve(a, b)
File "/usr/lib/python2.4/site-packages/scipy/linsolve/linsolve.py", line 76, in spsolve
return gssv(N, lastel, data, index0, index1, b, csc, permc_spec)[0]
TypeError: array cannot be safely cast to required type
======================================================================
ERROR: check loadmat case cellnest
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.4/site-packages/scipy/io/tests/test_mio.py", line 80, in cc
self._check_case(name, expected)
File "/usr/lib/python2.4/site-packages/scipy/io/tests/test_mio.py", line 75, in _check_case
self._check_level(k_label, expected, matdict[k])
File "/usr/lib/python2.4/site-packages/scipy/io/tests/test_mio.py", line 33, in _check_level
self._check_level(level_label, ev, actual[i])
File "/usr/lib/python2.4/site-packages/scipy/io/tests/test_mio.py", line 33, in _check_level
self._check_level(level_label, ev, actual[i])
File "/usr/lib/python2.4/site-packages/scipy/io/tests/test_mio.py", line 33, in _check_level
self._check_level(level_label, ev, actual[i])
File "/usr/lib/python2.4/site-packages/scipy/io/tests/test_mio.py", line 30, in _check_level
assert len(expected) == len(actual), "Different list lengths at %s" % label
TypeError: len() of unsized object
======================================================================
FAIL: check_rvs (scipy.stats.tests.test_distributions.test_randint)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.4/site-packages/scipy/stats/tests/test_distributions.py", line 84, in check_rvs
assert isinstance(val, numpy.ScalarType),`type(val)`
AssertionError: <type 'numpy.ndarray'>
----------------------------------------------------------------------
Ran 1569 tests in 4.551s
FAILED (failures=1, errors=2)
Any hints?
wr
PS: Here is the output head of "python setup.py install":
fft_opt_info:
fftw3_info:
libraries fftw3 not found in /usr/local/lib
libraries fftw3 not found in /usr/lib
fftw3 not found
NOT AVAILABLE
fftw2_info:
libraries rfftw,fftw not found in /usr/local/lib
libraries rfftw,fftw not found in /usr/lib
fftw2 not found
NOT AVAILABLE
dfftw_info:
libraries drfftw,dfftw not found in /usr/local/lib
libraries drfftw,dfftw not found in /usr/lib
dfftw not found
NOT AVAILABLE
djbfft_info:
NOT AVAILABLE
NOT AVAILABLE
blas_opt_info:
blas_mkl_info:
libraries mkl,vml,guide not found in /usr/local/lib
libraries mkl,vml,guide not found in /usr/lib
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
libraries lapack,blas not found in /usr/local/lib
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
FOUND:
libraries = ['lapack', 'blas']
library_dirs = ['/usr/lib/atlas']
language = c
include_dirs = ['/usr/include']
Could not locate executable gfortran
Could not locate executable f95
customize GnuFCompiler
customize GnuFCompiler
customize GnuFCompiler using config
compiling '_configtest.c':
/* This file is generated from numpy_distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
ATL_buildinfo();
return 0;
}
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-c'
gcc: _configtest.c
gcc -pthread _configtest.o -L/usr/lib/atlas -llapack -lblas -o _configtest
ATLAS version 3.6.0 built by camm on Tue Jun 15 03:19:44 UTC 2004:
UNAME : Linux intech131 2.4.20 #1 SMP Thu Jan 23 11:24:05 EST 2003 i686 GNU/Linux
INSTFLG :
MMDEF :
ARCHDEF :
F2CDEFS : -DAdd__ -DStringSunStyle
CACHEEDGE: 196608
F77 : /usr/bin/g77, version GNU Fortran (GCC) 3.3.5 (Debian 1:3.3.5-1)
F77FLAGS : -O
CC : /usr/bin/gcc, version gcc (GCC) 3.3.5 (Debian 1:3.3.5-1)
CC FLAGS : -fomit-frame-pointer -O3 -funroll-all-loops
MCC : /usr/bin/gcc, version gcc (GCC) 3.3.5 (Debian 1:3.3.5-1)
MCCFLAGS : -fomit-frame-pointer -O
success!
removing: _configtest.c _configtest.o _configtest
FOUND:
libraries = ['lapack', 'blas']
library_dirs = ['/usr/lib/atlas']
language = c
define_macros = [('ATLAS_INFO', '"\\"3.6.0\\""')]
include_dirs = ['/usr/include']
ATLAS version 3.6.0
lapack_opt_info:
lapack_mkl_info:
mkl_info:
libraries mkl,vml,guide not found in /usr/local/lib
libraries mkl,vml,guide not found in /usr/lib
NOT AVAILABLE
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
libraries lapack,blas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/local/lib
libraries lapack_atlas not found in /usr/lib/atlas
numpy.distutils.system_info.atlas_threads_info
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
FOUND:
libraries = ['lapack', 'lapack', 'blas']
library_dirs = ['/usr/lib/atlas']
language = f77
include_dirs = ['/usr/include']
customize GnuFCompiler
customize GnuFCompiler
customize GnuFCompiler using config
compiling '_configtest.c':
/* This file is generated from numpy_distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
ATL_buildinfo();
return 0;
}
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-c'
gcc: _configtest.c
gcc -pthread _configtest.o -L/usr/lib/atlas -llapack -llapack -lblas -o _configtest
ATLAS version 3.6.0 built by camm on Tue Jun 15 03:19:44 UTC 2004:
UNAME : Linux intech131 2.4.20 #1 SMP Thu Jan 23 11:24:05 EST 2003 i686 GNU/Linux
INSTFLG :
MMDEF :
ARCHDEF :
F2CDEFS : -DAdd__ -DStringSunStyle
CACHEEDGE: 196608
F77 : /usr/bin/g77, version GNU Fortran (GCC) 3.3.5 (Debian 1:3.3.5-1)
F77FLAGS : -O
CC : /usr/bin/gcc, version gcc (GCC) 3.3.5 (Debian 1:3.3.5-1)
CC FLAGS : -fomit-frame-pointer -O3 -funroll-all-loops
MCC : /usr/bin/gcc, version gcc (GCC) 3.3.5 (Debian 1:3.3.5-1)
MCCFLAGS : -fomit-frame-pointer -O
success!
removing: _configtest.c _configtest.o _configtest
FOUND:
libraries = ['lapack', 'lapack', 'blas']
library_dirs = ['/usr/lib/atlas']
language = f77
define_macros = [('ATLAS_INFO', '"\\"3.6.0\\""')]
include_dirs = ['/usr/include']
ATLAS version 3.6.0
ATLAS version 3.6.0
non-existing path in 'Lib/linsolve': 'tests'
umfpack_info:
libraries umfpack not found in /usr/local/lib
libraries umfpack not found in /usr/lib
/usr/lib/python2.4/site-packages/numpy/distutils/system_info.py:401: UserWarning:
UMFPACK sparse solver (http://www.cise.ufl.edu/research/sparse/umfpack/)
not found. Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [umfpack]) or by setting
the UMFPACK environment variable.
warnings.warn(self.notfounderror.__doc__)
NOT AVAILABLE
non-existing path in 'Lib/maxentropy': 'doc'
Warning: Subpackage 'Lib' configuration returned as 'scipy'
running install
running build
running config_fc
running build_src
...
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