Mailman 3 March 2022 - DIPY

Re: [EXTERN] Re: [DIPY Workshop 2022] Day 1 of educational videos is released!
by Eleftherios Garyfallidis March 22, 2022

March 22, 2022

Sounds good. On Tue, Mar 22, 2022 at 9:44 AM Niemann, Filip < Filip.Niemann(a)med.uni-greifswald.de> wrote: > Dear Prof Garyfallidis, > > I will join the life demo today at 4 PM your time. Thanks for your help. > > > ------------------------------ > *Von:* Eleftherios Garyfallidis <elef(a)indiana.edu> > *Gesendet:* Dienstag, 22. März 2022 14:38:04 > *An:* Niemann, Filip > *Cc:* dipy(a)python.org > *Betreff:* Re: [EXTERN] [DIPY] Re: [DIPY Workshop … [View More]2022] Day 1 of > educational videos is released! > > Dear Filip, can you join any of the live q&a sessions or demos today? We > will then assign you to a person for a one to one meeting to look deeper > into this problem. > > On Tue, Mar 22, 2022 at 9:28 AM Niemann, Filip < > Filip.Niemann(a)med.uni-greifswald.de> wrote: > >> Dear Prof. Garyfallidis, >> >> I'm a participant of your DIPY workshop. I learned a lot yesterday, so >> thanks for your effort. >> >> >> I wanted to post my problems in the life session but it was too fast for >> me and i was unable to cope all the information because I'm still >> struggling with the preprocessing. I would appreciate any help with my data >> set so that I can try to keep up next time. I hope my request is >> appropriate. >> >> >> >> My specific problem. >> >> When I use eddy_openmp I got the error >> >> EddyInputError: Error when attempting to read --bvecs file >> sub-01_ses-Zahl_dwi_LR >> >> information about my steps are in the info_all_fsl6_old.sh file >> >> you can find my dataset in the link below >> >> https://nextcloud.uni-greifswald.de/index.php/s/qaeBE4ETeGz6AD5 >> >> >> Any help is appreciated. >> >> Greetings >> >> Filip Niemann >> ------------------------------ >> *Von:* Eleftherios Garyfallidis <garyfallidis(a)gmail.com> >> *Gesendet:* Montag, 21. März 2022 15:22:53 >> *An:* dipy(a)python.org >> *Betreff:* [EXTERN] [DIPY] Re: [DIPY Workshop 2022] Day 1 of educational >> videos is released! >> >> The First live Q&A session of Day 1 starts exactly at *10:45 am EDT >> (UTC-4)* with zoom. That's in about 20 minutes from now. >> The zoom link is available at * dipy.org <http://dipy.org/> -> Login -> >> Workshop Space -> 2022 ->* *Home*. >> >> Excited to see you all online! >> Eleftherios >> >> On Mon, Mar 21, 2022 at 10:12 AM Garyfallidis, Eleftherios < >> elef(a)indiana.edu> wrote: >> >>> Hello all, >>> >>> We released the first day of educational videos!! >>> >>> *Simply go to dipy.org <http://dipy.org> -> Login -> Workshop Space -> >>> 2022 -> Schedule and click on Day 1.* >>> >>> >>> [image: image.png] >>> >>> *Don't miss the live sessions (Keynote, Q&A and Demos)!* >>> >>> See you online and at the integrated chatroom. >>> >>> On behalf of the DIPY team, >>> Eleftherios >>> >>> p.s. If you have not registered yet please register here >>> <https://dipy.org/workshops/dipy-workshop-2022#Registration>. >>> >> [View Less]

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Re: [DIPY Workshop 2022] Day 1 of educational videos is released!
by Eleftherios Garyfallidis March 22, 2022

March 22, 2022

The First live Q&A session of Day 1 starts exactly at *10:45 am EDT (UTC-4)* with zoom. That's in about 20 minutes from now. The zoom link is available at * dipy.org <http://dipy.org/> -> Login -> Workshop Space -> 2022 ->* *Home*. Excited to see you all online! Eleftherios On Mon, Mar 21, 2022 at 10:12 AM Garyfallidis, Eleftherios <elef(a)indiana.edu> wrote: > Hello all, > > We released the first day of educational videos!! > > *Simply go to dipy.… [View More]

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[DIPY Workshop 2022] Day 1 of educational videos is released!
by Eleftherios Garyfallidis March 21, 2022

March 21, 2022

Hello all, We released the first day of educational videos!! *Simply go to dipy.org <http://dipy.org> -> Login -> Workshop Space -> 2022 -> Schedule and click on Day 1.* [image: image.png] *Don't miss the live sessions (Keynote, Q&A and Demos)!* See you online and at the integrated chatroom. On behalf of the DIPY team, Eleftherios p.s. If you have not registered yet please register here <https://dipy.org/workshops/dipy-workshop-2022#Registration>.

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[DIPY Workshop 2022] Welcome!!!
by Eleftherios Garyfallidis March 20, 2022

March 20, 2022

Hello all, Thank you for registering to the workshop. Please go to https://dipy.org and Login (located near the top right corner of the website). See below: After logging in please go again at the top right where you see the black profile and select Workshop Space. Then you can navigate, see the schedule, integrated chat and courses. All educational materials are available in the Courses tab. Zoom links for all the live sessions are available in the Home tab. The … [View More]

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Doubt regarding the DIPY workshop
by Monish Krishnan March 18, 2022

March 18, 2022

Hi Team, I am a CS grad and interested in attending the workshop. I want to explore the field of neural imaging but have no prior experience in it. Do the attendees require any must have knowledge prior to attending the workshop? Thanks, MK

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ANN: DIPY 1.5.0 Released!
by Eleftherios Garyfallidis March 17, 2022

March 17, 2022

Dear all, We are excited to announce a new release of DIPY: version 1.5.0 is out of the oven! Just before the DIPY workshop ... continue reading ... DIPY 1.5.0 (Friday, 11 March 2022) The release 1.5.0 received contributions from 22 developers (the complete release notes are at: https://dipy.org/documentation/1.5.0/release_notes/release1.5/). Thank you all for your contributions and feedback! Please click here <https://dipy.org/documentation/1.5.0/api_changes/> to check 1.5.0 API … [View More]changes. Highlights of 1.5.0 release include: - New reconstruction model added: Q-space Trajectory Imaging (*QTI*). - New reconstruction model added: Robust and Unbiased Model-BAsed Spherical Deconvolution (*RUMBA-SD*). - New reconstruction model added: Residual block Deep Neural Network ( *ResDNN*). - Masking management in Affine Registration added. - Multiple *Workflows* updated (DTIFlow, DKIFlow, ImageRegistrationFlow) and added (MotionCorrectionFlow). - Compatibility with Python 3.10 added. - Migrations from Azure Pipeline to Github Actions. - Large codebase cleaning. - New parallelisation module added. - dipy.io.bvectxt module deprecated. - New DIPY *Horizon* features (ROI Visualizer, random colors flag). - Large documentation update. - Closed 129 issues and merged 72 pull requests. To upgrade or install <http://dipy.org/release0.10.html> DIPY Run the following command in your terminal: <http://dipy.org/release0.10.html> pip install --upgrade dipy or conda install -c conda-forge dipy This version of DIPY depends on nibabel (3.0.0+). For visualization you need FURY (0.8.0+). Questions or suggestions? For any questions go to https://dipy.org, or send an e-mail to dipy(a)python.org <neuroimaging(a)python.org> We also have an instant messaging service and chat room available at https://gitter.im/dipy/dipy Finally, a new forum is available at https://github.com/dipy/dipy/discussions This important release will be highlighted at the 5 day DIPY workshop starting this Monday, March 21st! Find the exquisite program here <https://github.com/dipy/dipy_assets/raw/main/DIPY%20Workshop%202022%20Sched…> and register for the workshop here <https://dipy.org/workshops/dipy-workshop-2022>. *Have a wonderful research time using the new version *and please support us by citing DIPY in your papers using the following DOI: 10.3389/fninf.2014.00008 <https://www.ncbi.nlm.nih.gov/pubmed/24600385> On behalf of the DIPY developers, Eleftherios Garyfallidis, Ariel Rokem, Serge Koudoro https://dipy.org/contributors [View Less]

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DIPY Workshop 2022 - Online Edition
by Eleftherios Garyfallidis March 11, 2022

March 11, 2022

Dear Neuroimaging Community, The Online DIPY Workshop is back with a great lineup of topics and speakers! Please forward this email to any interested parties. [image: image.png] For registration and more information please visit https://dipy.org/workshops/latest On behalf of the DIPY team, Eleftherios Garyfallidis, PhD Assistant Professor Intelligent Systems Engineering Indiana University Luddy Hall 700 N Woodlawn Bloomington, IN 47408 GRG <https://grg.luddy.indiana.edu/> | DIPY <… [View More]

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low values in FW-corrected MD
by Khazar Ahmadi March 11, 2022

March 11, 2022

Dear Dipy experts, I've used DIPY's implementation of DTI and FW-DTI in a large group of cognitively normal subjects and patients with mild cognitive impairment. The diffusion data has104 directions with bvals = 0, 100, 1000 and 2500. For standard-DTI modelling, the volumes with high b values were discarded whereas for FW-DTI, the original data was fed to model which can handle multi-shell data. I then ran TBSS and randomise commands to assess the association of different DTI-derived metrics … [View More]

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Open Meeting - Pre-Workshop Open Question
by Koudoro, Serge March 10, 2022

March 10, 2022

Hello all, Today (Thursday, March 10th), at 1 pm Eastern Time (7pm CET / 10am PT), the theme of the Open Meeting is Pre-Workshop Open Question During this meeting, we will answer all your questions about the future DIPY Workshop event. Duration: 45min Connect here: https://iu.zoom.us/j/84926066336 Schedule: https://github.com/dipy/dipy/discussions/2398 Do not forget to add DIPY event calendar to your calendar list: https://calendar.google.com/calendar/u/0?cid=… [View More]

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DIPY workshop time zone
by Christine Farrugia March 7, 2022

March 7, 2022

Hi, I am writing about the DIPY workshop of the 21-25 March. Will the meeting schedule be tailored for Eastern Standard Time? Regards, Christine -- <https://www.um.edu.mt/> Christine Farrugia | Scientific Officer B.Sc. (Hons.) M.Phil. Ph.D. MRI Lab (TRAKE) Faculty of Engineering Room 104, Biomedical Sciences Building +356 2340 3212 <https://www.facebook.com/universityofmalta> <https://www.youtube.com/user/universityofmalta>

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