Mailman 3 January 2023 - DIPY

tractography of histological data
by Alex Crimi Jan. 24, 2023

Jan. 24, 2023

Hello, we are working with low level image processing libraries for histological data (either doingstructure tensor from light sheet neuronal tracts images, or even more complicated glial directions from 2D stacks of H&E). From previous mails I have read "expanding tractography to non MRI data". Where you referring to something like this? For the moment we are using the matlab code of Schurr and Mezer https://github.com/MezerLab/NisslST/tree/v1.0but we indeed are working on the porting. Anybody else doing something like this? Is this within the plan of Dipy? Best,Alex

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Re: [Neuroimaging] Using brain tractography with Nibabel or Dipy directly from Blender 3D
by Eleftherios Garyfallidis Jan. 24, 2023

Jan. 24, 2023

Great! Thank you for sharing Yann. On Mon, Jan 23, 2023 at 6:16 PM Yann Cointepas <yann(a)cointepas.net> wrote: > Hi, > > I'm trying to integrate brain volumes into Blender in my spare time. I > thought you might be interested in my recent attempts to make dynamic > slices of images read by Nibabel. I've detailed everything here: > > https://github.com/sapetnioc/brainblend > > Best, > > Yann >

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Using brain tractography with Nibabel or Dipy directly from Blender 3D
by Alex Crimi Jan. 23, 2023

Jan. 23, 2023

I know you are all interested in expanding Fury, but ages ago I discussed with Eleftherios how to render streamlines (or use the entire Dipy) from Blender 3D.I made a video tutorial, the code is in the description of the videohttps://www.youtube.com/watch?v=ANkq9EAEEeI I hope I am not too late. Ale

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Re: DIPY Workshop 2023
by Eleftherios Garyfallidis Jan. 20, 2023

Jan. 20, 2023

Hi Meghan, Thank you for your question. Yes, there is going to be an announcement in about a week. Best, Elef On Thu, Jan 19, 2023 at 6:38 PM Meghan Griffin via DIPY <dipy(a)python.org> wrote: > Hello, > I see that you have held an annual workshop on DIPY for the past few > years. Is there a workshop planned for 2023? > > Thank you, > Meghan Griffin > >

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DIPY Workshop 2023
by Meghan Griffin Jan. 19, 2023

Jan. 19, 2023

Hello, I see that you have held an annual workshop on DIPY for the past few years. Is there a workshop planned for 2023? Thank you, Meghan Griffin

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DIPY - CZI EOSS Grant Award Announcement
by Eleftherios Garyfallidis Jan. 8, 2023

Jan. 8, 2023

Dear DIPY and Neuroimaging communities, We are happy to announce that The Chan Zuckerberg Institute (CZI) has awarded an EOSS grant to the DIPY project. This grant will support Serge Koudoro (PI - Indiana university, USA), Dr. Girard (EPFL - Switzerland) and Dr. Rokem (UW - USA) to: - Extend DIPY to non-MRI data e.g. extending our registration framework - Add parallel computing capabilities - Improve our tractography framework - Expand documentation - Improve educational materials Community participation is highly encouraged in CZI grants and Serge who leads this project will follow up with more information about that during the following weeks and months. The official CZI EOSS announcement is here <https://chanzuckerberg.com/eoss/proposals/strengthening-computational-neuro…> . Many Congratulations to Serge and team and Happy 2023 to you all! On behalf of the DIPY team, Eleftherios Garyfallidis, PhD Associate Professor Director of Graduate Studies Intelligent Systems Engineering Indiana University Luddy Hall 700 N Woodlawn Bloomington, IN 47408 GRG <https://grg.luddy.indiana.edu/> | DIPY <http://dipy.org/> | FURY <https://fury.gl/>

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