Mailman 3 - DIPY - python.org

DIPY workshop
by Aviad Rabinowich 20 Feb '24

20 Feb '24

Hi, the DIPY workshop looks great. I have a few questions before registration: 1. I'm a radiologist and also a PhD student. I'm familiar with MRI physics, but can be better at coding. Is the workshop also good for those with limited coding capabilities? 2. I am in a different time zone. The option to excess the course materials following the course is only open for Platinum registration? best, Aviad

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Using the atlas HCP1065 in DIPY
by Анастасия Гейнц 01 Feb '24

01 Feb '24

Hello. For our work, we need to use the HCP1065 atlas by Yeh et al. We would like to clarify with you how the tractogram of the whole brain was obtained for advanced 80 bundles atlas›, as well as obtaining the streamline file for a specific atlas. Sincerely, Heinz A., MD.

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Registration
by Hanaoka, Mauro 30 Jan '24

30 Jan '24

Hi, I would like to register for the dipy course. Best, Mauro Hanaoka Get Outlook for iOS<https://aka.ms/o0ukef>

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Paid access to workshop content
by Carly Hood 30 Jan '24

30 Jan '24

Good afternoon, I am a PhD student at the MRC Cognition and Brain Sciences Unit at the University of Cambridge. I am conducting research that will use tractography and plan to use Diffusion Imaging in Python. Unfortunately I have in-person commitments that clash with the workshop, however was wondering whether the silver registration includes access to workshop recordings? Best, Carly Charlotte (Carly) Hood (she/her) | PhD Student Genomic Disorders and Cognitive Development Group MRC Cognition Brain and Sciences Unit | University of Cambridge

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Dipy Course Registration
by Hanaoka, Mauro 26 Jan '24

26 Jan '24

Hi, I would like to register for the dipy course if possible. It would help tremendously. Best, -Mauro Mauro Hanaoka, MD Neuroradiology University of Pennsylvania

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NeuroHackademy 2024: Call for applications
by Ariel Rokem 25 Jan '24

25 Jan '24

We are happy to announce a call for applications to participate in NeuroHackademy 2024! This two-week hands-on workshop will be held in a hybrid format, July 29th- August 10th, 2024 at the University of Washington in Seattle, Washington, USA, and online. NeuroHackademy is an opportunity for participants to learn state-of-the-art methods for the analysis and management of large human neuroscience datasets while also networking and working with domain experts and each other on concrete neuroscience problems. The curriculum emphasizes large datasets of publicly available data (such as the Human Connectome Project, OpenNeuro, etc.), and on the value of making human neuroscience research open and reproducible. NeuroHackademy sessions in the first week will include lectures and tutorials on data science, machine learning, data visualization, and data resources, as well as extended Q&A sessions. The second week will be devoted primarily to participant-directed activities: guided work on team projects, hackathon sessions, and breakout sessions on topics of interest. Participants will have an opportunity to present their own work in a session that will take place in the second week of the event. This event will be held in a hybrid format, with options to attend in-person in Seattle, or online. Participants attending online will join the event through multiple online channels, including zoom-casts of lectures and breakout sessions, Slack conversations, and collaboration through GitHub and through the course’s online Juptyerhub. For more details and a preliminary list of instructors, see: https://neurohackademy.org/ We are now accepting applications to participate at: https://neurohackademy.org/apply/ Ideally, applicants should have some prior experience with programming and with neuroscience data analysis, but we welcome applications from participants with a variety of relevant backgrounds. For frequently asked questions, please refer to this page: https://neurohackademy.org/frequently-asked-questions/ Accepted applicants will be asked to pay a fee of $250 (in person) / $25 (online) upon final registration. Fees cover housing and two meals per day for in person participants. Important dates: April 15th, application deadline May 6th, notification of acceptance May 20th, final registration deadline July 29th - August 10th: NeuroHackademy

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MD images post FW correction look bad.
by madhura ingalhalikar 17 Jan '24

17 Jan '24

Hi all, I used a standard code to compute fwdtimodel = fwdti.FreeWaterTensorModel(gtab) fwdtifit = fwdtimodel.fit(data, mask) FW = fwdtifit.fw FA = fwdtifit.fa MD = fwdtifit.md The MD image has few bins and most of the brain has the same intensity of like 0.000569. Can you pls help me why this would happen? I did check on mailing list, but didnt find any question related to this. [image: image.png]

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DIPY Workshop
by chiara camastra 17 Jan '24

17 Jan '24

Dear organizers, I am a biomedical engineer and I am currently enrolled in the first year of phD in Digital Technologies applied to Medicine at the Neuroscience Research Center of the Magna Graecia University of Catanzaro. I am currently working on cerebral and corticospinal tractography. Unfortunately in our university no funds are allocated for phD students so all my research work is based on a strong passion that I hope will repay me one day. For this reason, I wanted to ask if there were further discounts for phD students. Thank you in advance for kindly looking into my request. Kind regards, Chiara Camastra.

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DIPY workshop 11th -15th March 2024
by Costanza Parodi 12 Jan '24

12 Jan '24

Dear Dipy team, I have some queries on the DIPY workshop that will be held on March 2024. I am very interested in the topic of the workshop but I will not be able to attend as I will be travelling during that period. I have read on the site that I will be granted access to materials and talks if registered with the platinum formula. However, I wanted to be assured that this would be the case despite me not being able to participate to study groups. Thank you for the attention and help. Best regards, Costanza Parodi

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Open Meeting : Happy 2024 !
by Serge K. 08 Jan '24

08 Jan '24

Hello all, The DIPY Team wishes the best for 2024 ! This is a friendly reminder that *today, At 1 pm EST*, we have our monthly open meeting. This meeting is focused for developers and contributors The zoom link for these talks is https://iu.zoom.us/j/84926066336 See below the initial schedule of future meetings (you can also add DIPY calendar in your calendar (h ttps://calendar.google.com/calendar/u/0?cid=dXY4YzUwZmtmdnM1Mjk4MzdrMjk4dWV… ): - Friday, September 15th CTI - Monday, October 2nd. : Documentation & Release / packaging - Monday, November 6th: Tractography & Need for speed - Monday December 4th: Open question / Image Registration - Monday January 8th: Happy new year introduction / Open Question / Plan for the year / workshop request and preparation - Monday February 5th: TBD - Monday March 4th: TBD - *DIPY WORKSHOP 2024 March 11-15* (you can already register!) https://dipy.org/workshops/dipy-workshop-2024 See you all online. On Behalf of the DIPY Team, *Serge Koudoro* Software Developer Intelligent Systems Engineering Garyfallidis Research Group <https://grg.luddy.indiana.edu/> School of Informatics, Computing, and Engineering Luddy Hall 700 N Woodlawn Ave, 4056 Bloomington, IN 47408 skoudoro(a)iu.edu <skoudoro(a)indiana.edu>

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