DMRIPREPS, FMRIPREP and DIPY
Hi, Happy new year! long story short, I am working on a followup of my implementation of effective connectivity: https://www.sciencedirect.com/science/article/pii/S1053811921005644 where I need both fMRI and diffusion data to build a structural connectome.Can we touch the topic of preprocessing pipelines jointly to structural connectome construction? In particular imagine I also have to do the preprocessing pipeline for fMRI (fMRIprep).I found this dmriprep https://github.com/nipreps/dmriprepis it something people here recommend? or simply given the BIDS format, I just do fMRIprep and then my own preprocessing and connectome construction (plus whatever I do with my effective connectivity)? I apologize if I am putting too many ideas at the same time.Best,Alex
Hi Alex, On Tue, Jan 11, 2022 at 8:40 PM Alex Crimi via DIPY <dipy@python.org> wrote:
We're working on it, but it's still very much work-in-progress. For the time being, we routinely use qsiprep for dMRI preprocessing: https://qsiprep.readthedocs.io/en/latest/ Cheers, Ariel or simply given the BIDS format, I just do fMRIprep and then my own
Hi Alex, On Tue, Jan 11, 2022 at 8:40 PM Alex Crimi via DIPY <dipy@python.org> wrote:
We're working on it, but it's still very much work-in-progress. For the time being, we routinely use qsiprep for dMRI preprocessing: https://qsiprep.readthedocs.io/en/latest/ Cheers, Ariel or simply given the BIDS format, I just do fMRIprep and then my own
participants (2)
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Alex Crimi -
Ariel Rokem