Hi Alex, On Tue, Jan 11, 2022 at 8:40 PM Alex Crimi via DIPY <dipy@python.org> wrote:

Hi,

Happy new year!

long story short, I am working on a followup of my implementation of effective connectivity: https://www.sciencedirect.com/science/article/pii/S1053811921005644

where I need both fMRI and diffusion data to build a structural connectome. Can we touch the topic of preprocessing pipelines jointly to structural connectome construction?

In particular imagine I also have to do the preprocessing pipeline for fMRI (fMRIprep). I found this dmriprep https://github.com/nipreps/dmriprep is it something people here recommend?

We're working on it, but it's still very much work-in-progress. For the time being, we routinely use qsiprep for dMRI preprocessing: https://qsiprep.readthedocs.io/en/latest/ Cheers, Ariel or simply given the BIDS format, I just do fMRIprep and then my own

preprocessing and connectome construction (plus whatever I do with my effective connectivity)?

I apologize if I am putting too many ideas at the same time. Best, Alex _______________________________________________ DIPY mailing list -- dipy@python.org To unsubscribe send an email to dipy-leave@python.org https://mail.python.org/mailman3/lists/dipy.python.org/ Member address: arokem@gmail.com