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April 2024

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FaST-LMM 0.6.8: fixes SciPy issues
by Carl K April 30, 2024

April 30, 2024

Greetings, We're happy to announce FaST-LMM version 0.6.8. It contains hundreds of little changes to let it work with newer versions of SciPy, NumPy, and matplotlib. To get the new version, just: * pip install fastlmm==0.6.8 Yours, Carl

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New bed-reader feature: Support for writing very large PLINK 1.9 Bed Files
by Carl K April 22, 2024

April 22, 2024

Greetings, The Python version of the bed-reader package (1.0.3) now supports writing out large PLINK 1.9 Bed Files too big to fit in memory. Documentation on the new features: https://fastlmm.github.io/bed-reader/#bed_reader.create_bed Here is a notebook that shows the creation of a 1M sample x 250K SNP Bed file (In just, 5 minutes). Also, you can convert between individual-major to SNP-major mode (In about 1 hour). https://github.com/fastlmm/bed-reader/blob/master/bed_reader/tests/benchmar…… [View More]

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