Really useful functionality.  Thanks Carl!

 

From: Carl KADIE <carlk@msn.com>
Sent: Tuesday, June 8, 2021 4:10 PM
To: fastlmm-user@python.org; fastlmm-dev@python.org
Subject: [fastlmm-user] More multiple phenotype support in FaST-LMM

 

Greetings,

 

I’m happy to announce support for multiple phenotypes by FaST-LMM’s single_snp function. Running with more phenotypes can generate more data, so we’ve also added new features related to caching and filtering out unneeded output lines.

 

A new notebook demonstrates all the new features.

 

A university user requested these feature and then used them to do a multi-day run with 16,000 phenotypes. That run found a couple areas with promising associations.

 

To install FaST-LMM, start with Miniconda or Anaconda.

      (If already installed,  un-install it with “pip uninstall fastlmm”.) Then …

conda install "mkl==2019.4" "scipy" "numpy"
pip install --no-build-isolation fastlmm

 

 

-          Carl

_______________________________________________
fastlmm-user mailing list -- fastlmm-user@python.org
To unsubscribe send an email to fastlmm-user-leave@python.org
https://mail.python.org/mailman3/lists/fastlmm-user.python.org/
Member address: luecks@gmail.com