I have been fighting with the genfromtxt function in numpy for a while now and am trying a slightly different approach.

Here is the code:

import os
import glob
import numpy as np

fileList = []
filesList = []

for files in glob.glob("*.log"):
?????? fileName, fileExtension = os.path.splitext(files)
?????? fileList.append(fileName)
?????? filesList.append(files)

print('fileList = ', fileList)
print('filesList = ', filesList)

fname = filesList
print('fname = ', fname)
data = np.genfromtxt(fname, usecols=(1), skip_header=27, skip_footer=1, encoding=None)
print(data)

np.savetxt('fileList.dG', data, fmt='%12.9f', header='${d}')
print(data.dG)

I am using the Spyder IDE which has a variable explorer which shows:

filesList = ['C-VX3.log', '18-7.log', '14-7.log', '15-7.log']
fileList = ['C-VX3', '18-7', '14-7', '15-7']

so the lists that genfromtxt needs are being generated.

Goggling 'numpy genfromtxt stopiteration error' does not seem to address this problem. At least, I didn't find plaything that I thought applied.

I would greatly appreciate some assistance here.

Thanks is advance.

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Stephen P. Molnar, Ph.D.
www.molecular-modeling.net
614.312.7528 (c)
Skype:  smolnar1