Dear Jeff, Thanks a lot for your reply. I think it might be related with the memory management on our sever. But anyway, as you suggested, I open an issue on netcdf4-python.google.co <http://netcdf4-python.google.com>m. you can find the data and script on ftp://ftp.cea.fr/incoming/y2k01/chaoyue/. The cal_cmi_big.py gave the core dumped error, in which I tried to operate with big files (~2G). The cal_cmi_small.py works fine, which handles data only ~25M (a subset of big files). I used a small function (which use NetCDF4) in the script to read and write nc data with NetCDF4. You can also find this function in ncfunc.py. I tested all the script and data before I upload on our ftp. thanks again for your help, cheers, Chao 2012/5/26 Jeff Whitaker <jswhit@fastmail.fm>
On 5/26/12 5:51 AM, Chao YUE wrote:
Dear all,
Previously I am able to run a script on our server but now it gave me a Segmentation fault (core dumped) error. try I tried the script with same type of netcdf file but with much smaller file size and it works. So I think the error is related with memory stuff. I guess it's because our system administrator make some change somewhere and that cause my problem? the file size that cause the error to appear is 2.6G (in the script I read this file with NetCDF4 to numpy array and make some manipulation), the small one without error is only 48M.
Chao: Without seeing your script, there's not much I can say. I suggest opening an issue at netcdf4-python.google.com, including your script as an attachment. You'll probably have to post the data file somewhere (dropbox perhaps?) so I can run the script that triggers the segfault.
-Jeff
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