Re: [Numpy-discussion] De Bruijn sequence

On Sat, Feb 1, 2014 at 3:40 PM, Ralf Gommers wrote:

On Fri, Jan 24, 2014 at 12:26 AM, Vincent Davis wrote:

...

I happen to be working with De Bruijn sequences. Is there any interest in this being part of numpy/scipy?

https://gist.github.com/vincentdavis/8588879

That looks like an old copy of GPL code from Sage: http://git.sagemath.org/sage.git/tree/src/sage/combinat/debruijn_sequence.py...

Besides the licensing issue, it doesn't really belong in scipy and certainly not in numpy imho.

Ralf

If it is GPL code that would be a problem, but in terms of scope it might fit under Biopython given how much De Bruijn graphs are used in current sequence analysis. Regards, Peter