Hi all, Stéfan and I wrote a NEP about cleaning up the Python API for the NumPy 2.0 release. It was first presented at the NumPy 2.0 developer meeting last month, and more review comments came in on https://github.com/numpy/numpy/pull/23537. It seems about ready to propose for wider review here and then merging with Draft status. Full NEP text below, we're looking forward to hearing more feedback! Cheers, Ralf Abstract -------- We propose to clean up NumPy's Python API for the NumPy 2.0 release. This includes a more clearly defined split between what is public and what is private, and reducing the size of the main namespace by removing aliases and functions that have better alternatives. Motivation and Scope -------------------- NumPy has a large API surface that evolved organically over many years: .. code:: python
objects_in_api = [s for s in dir(np) if not s.startswith('_')] len(objects_in_api) 562 modules = [s for s in objects_in_api if inspect.ismodule(eval(f'np.{s}'))] modules ['char', 'compat', 'ctypeslib', 'emath', 'fft', 'lib', 'linalg', 'ma', 'math', 'polynomial', 'random', 'rec', 'testing', 'version'] len(modules) 14
The above doesn't even include items that are public but have been been hidden from ``__dir__``. A particularly problematic example of that is ``np.core``, which is technically private but heavily used in practice. For a full overview of what's considered public, private or a bit in between, see `<https://github.com/numpy/numpy/blob/main/numpy/tests/test_public_api.py
`__.
The size of the API and the lacking definition of its boundaries incur significant costs: - **Users find it hard to disambiguate between similarly named functions.** Looking for functions with tab completion in IPython, a notebook, or an IDE is a challenge. E.g., type ``np.<TAB>`` and look at the first six items offered: two ufuncs (``abs``, ``add``), one alias (``absolute``), and three functions that are not intended for end-users (``add_docstring``, ``add_newdoc``, ``add_newdoc_ufunc``). As a result, the learning curve for NumPy is steeper than it has to be. - **Libraries that mimic the NumPy API face significant implementation barriers.** For maintainers of NumPy API-compatible array libraries (Dask, CuPy, JAX, PyTorch, TensorFlow, cuNumeric, etc.) and compilers/transpilers (Numba, Pythran, Cython, etc.) there is an implementation cost to each object in the namespace. In practice, no other library has full support for the entire NumPy API, partly because it is so hard to know what to include when faced with a slew of aliases and legacy objects. - **Teaching NumPy is more complicated than it needs to be.** Similarly, a larger API is confusing to learners, who not only have to *find* functions but have to choose *which* functions to use. - **Developers are hesitant to grow the API surface.** This happens even when the changes are warranted, because they are aware of the above concerns. .. R: TODO: find and link discussion about restructuring namespaces! (e.g., find the thread with the GUI explorer person) .. S: Aaron's post re: array API and NumPy 2.0: https://mail.python.org/archives/list/numpy-discussion@python.org/thread/TTZ... The scope of this NEP includes: - Deprecating or removing functionality that is too niche for NumPy, not well-designed, superseded by better alternatives, an unnecessary alias, or otherwise a candidate for removal. - Clearly separating public from private NumPy API by use of underscores. - Restructuring the NumPy namespaces to be easier to understand and navigate. Out of scope for this NEP are: - Introducing new functionality or performance enhancements. Usage and Impact ---------------- A key principle of this API refactor is to ensure that, when code has been adapted to the changes and is 2.0-compatible, that code then *also* works with NumPy ``1.2x.x``. This keeps the burden on users and downstream library maintainers low by not having to carry duplicate code which switches on the NumPy major version number. Backward compatibility ---------------------- As mentioned above, while the new (or cleaned up, NumPy 2.0) API should be backward compatible, there is no guarantee of forward compatibility from 1.25.X to 2.0. Code will have to be updated to account for deprecated, moved, or removed functions/classes, as well as for more strictly enforced private APIs. In order to make it easier to adopt the changes in this NEP, we will: 1. Provide a transition guide that lists each API change and its replacement. 2. Provide a script to automate the migration wherever possible. This will be similar to ``tools/replace_old_macros.sed`` (which adapts code for a previous C API naming scheme change). This will be ``sed`` (or equivalent) based rather than attempting AST analysis, so it won't cover everything. Detailed description -------------------- Cleaning up the main namespace `````````````````````````````` We expect to reduce the main namespace by a large number of entries, on the order of 100. Here is a representative set of examples: - ``np.inf`` and ``np.nan`` have 8 aliases between them, of which most can be removed. - A collection of random and undocumented functions (e.g., ``byte_bounds``, ``disp``, ``safe_eval``, ``who``) listed in `gh-12385 <https://github.com/numpy/numpy/issues/12385>`__ can be deprecated and removed. - All ``*sctype`` functions can be deprecated and removed, they (see `gh-17325 <https://github.com/numpy/numpy/issues/17325>`__, `gh-12334 <https://github.com/numpy/numpy/issues/12334>`__, and other issues for ``maximum_sctype`` and related functions). - Business day functionality can likely be removed (unclear if it needs splitting out like was done for ``np.financial``). - The ``np.compat`` namespace, used during the Python 2 to 3 transition, will be removed. - Functions that are narrow in scope, with very few public use-cases, will be removed. See, e.g. ``real_if_close`` (`gh-11375 <https://github.com/numpy/numpy/issues/11375
`__). These will have to be identified manually and by issue triage.
New namespaces are introduced for warnings/exceptions (``np.exceptions``) and for dtype-related functionality (``np.types``). NumPy 2.0 is a good opportunity to populate these submodules from the main namespace. Functionality that is widely used but has a preferred alternative may either be deprecated (with the deprecation message pointing out what to use instead) or be hidden by not including it in ``__dir__``. In case of hiding, a ``.. legacy::`` directory may be used to mark such functionality in the documentation. A test will be added to ensure limited future growth of all namespaces; i.e., every new entry will need to be explicitly added to an allow-list. Cleaning up the submodule structure ``````````````````````````````````` We will clean up the NumPy submodule structure, so it is easier to navigate. When this was discussed before (see `MAINT: Hide internals of np.lib to only show submodules < https://github.com/numpy/numpy/pull/18447>`__) there was already rough consensus on that - however it was hard to pull off in a minor release. A basic principle we will adhere to is "one function, one location". Functions that are exposed in more than one namespace (e.g., many functions are present in ``numpy`` and ``numpy.lib``) need to find a single home. We will reorganize the API reference guide along main and submodule namespaces, and only within the main namespace use the current subdivision along functionality groupings. Also by "mainstream" and special-purpose namespaces: :: # Regular/recommended user-facing namespaces for general use. Present these # as the primary set of namespaces to the users. numpy numpy.exceptions numpy.fft numpy.linalg numpy.polynomial numpy.random numpy.testing numpy.typing # Special-purpose namespaces. Keep these, but document them in a separate # grouping in the reference guide and explain their purpose. numpy.array_api numpy.ctypeslib numpy.emath numpy.f2py # only a couple of public functions, like `compile` and `get_include` numpy.lib.stride_tricks numpy.rec numpy.types # Legacy (prefer not to use, there are better alternatives and/or this code # is deprecated or isn't reliable). This will be a third grouping in the # reference guide; it's still there, but de-emphasized and the problems # with it or better alternatives are explained in the docs. numpy.char numpy.distutils numpy.ma # To remove numpy.compat numpy.core # rename to _core numpy.doc numpy.math numpy.matlib numpy.matrixlib numpy.version # To clean out or somehow deal with: everything in `numpy.lib` .. note:: TBD: will we preserve ``np.lib`` or not? It only has a couple of unique functions/objects, like ``Arrayterator`` (a candidate for removal) and the ``stride_tricks`` subsubmodule. ``numpy.lib`` itself is not a coherent namespace, and does not even have a reference guide page. We will make all submodules available lazily, so that users don't have to type ``import numpy.xxx`` but can use ``import numpy as np; np.xxx.*``, while at the same time not negatively impacting the overhead of ``import numpy``. This has been very helpful for teaching scikit-image and SciPy. Reducing the number of ways to select dtypes ```````````````````````````````````````````` The many dtype classes, instances, aliases and ways to select them are one of the larger usability problems in the NumPy API. E.g.: .. code:: python
# np.intp is different, but compares equal too np.int64 == np.int_ == np.dtype('i8') == np.sctypeDict['i8'] True np.float64 == np.double == np.float_ == np.dtype('f8') == np.sctypeDict['f8'] True ### Really? np.clongdouble == np.clongfloat == np.longcomplex == np.complex256 True
These aliases can go: https://numpy.org/devdocs/reference/arrays.scalars.html#other-aliases All one-character type code strings and related routines like ``mintypecode`` will be marked as legacy. To discuss: - move *all* dtype-related classes to ``np.dtypes``? - canonical way to compare/select dtypes: ``np.isdtype`` (new, xref array API NEP), leaving ``np.issubdtype`` for the more niche use of numpy's dtype class hierarchy, and hide most other stuff. - possibly remove ``float96``/``float128``? they're aliases that may not exist, and are too easy to shoot yourself in the foot with. Cleaning up the niche methods on ``numpy.ndarray`` `````````````````````````````````````````````````` The ``ndarray`` object has a lot of attributes and methods, some of which are too niche to be that prominent, all that does is distract the average user. E.g.: - ``.ctypes`` - ``.itemset`` (already discouraged) - ``.newbyteorder`` (too niche) - ``.ptp`` (niche, use ``np.ptp`` function instead) - ``.repeat`` (niche, use ``np.ptp`` function instead) Related Work ------------ A clear split between public and private API was recently established as part of SciPy 1.8.0 (2021), see `tracking issue scipy#14360 <https://github.com/scipy/scipy/issues/14360
`__. The results were beneficial, and the impact on users relatively modest.
Implementation -------------- The full implementation will be split over many different PRs, each touching on a single API or a set of related APIs. To illustrate what those PRs will look like, we will link here to a representative set of example PRs: Deprecating non-preferred aliases and scheduling them for removal in 2.0: - `gh-23302: deprecate np.round_; add round/min/max to the docs < https://github.com/numpy/numpy/pull/23302>`__ - `gh-23314: deprecate product/cumproduct/sometrue/alltrue < https://github.com/numpy/numpy/pull/23314>`__ Hiding or removing objects that are accidentally made public or not even NumPy objects at all: - `gh-21403: remove some names from main numpy namespace < https://github.com/numpy/numpy/pull/21403>`__ Restructuring of public submodules: - `gh-18447: hide internals of np.lib to only show submodules < https://github.com/numpy/numpy/pull/18447>`__ Create new namespaces to make it easier to navigate the module structure: - `gh-22644: Add new np.exceptions namespace for errors and warnings < https://github.com/numpy/numpy/pull/22644>`__ Alternatives ------------ Discussion ---------- References and Footnotes ------------------------ Copyright --------- This document has been placed in the public domain.