[Numpy-discussion] ANN: SciPy 1.5.0rc1 -- please test

-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Hi all, On behalf of the SciPy development team I'm pleased to announce the release candidate SciPy 1.5.0rc1. Please help us test this pre-release. Sources and binary wheels can be found at: https://pypi.org/project/scipy/ and at: https://github.com/scipy/scipy/releases/tag/v1.5.0rc1 https://github.com/scipy/scipy/releases/tag/v1.4.0rc1 One of a few ways to install the release candidate with pip: pip install scipy==1.5.0rc1 ========================== SciPy 1.5.0 Release Notes ========================== Note: Scipy 1.5.0 is not released yet! SciPy 1.5.0 is the culmination of 6 months of hard work. It contains many new features, numerous bug-fixes, improved test coverage and better documentation. There have been a number of deprecations and API changes in this release, which are documented below. All users are encouraged to upgrade to this release, as there are a large number of bug-fixes and optimizations. Before upgrading, we recommend that users check that their own code does not use deprecated SciPy functionality (to do so, run your code with ``python -Wd`` and check for ``DeprecationWarning`` s). Our development attention will now shift to bug-fix releases on the 1.5.x branch, and on adding new features on the master branch. This release requires Python 3.6+ and NumPy 1.14.5 or greater. For running on PyPy, PyPy3 6.0+ and NumPy 1.15.0 are required. Highlights of this release --------------------------------- - wrappers for more than a dozen new ``LAPACK`` routines are now available in `scipy.linalg.lapack` - Improved support for leveraging 64-bit integer size from linear algebra backends - addition of the probability distribution for two-sided one-sample Kolmogorov-Smirnov tests New features ============ `scipy.cluster` improvements --------------------------------------- Initialization of `scipy.cluster.vq.kmeans2` using ``minit="++"`` had a quadratic complexity in the number of samples. It has been improved, resulting in a much faster initialization with quasi-linear complexity. `scipy.cluster.hierarchy.dendrogram` now respects the ``matplotlib`` color palette `scipy.fft` improvements ---------------------------------- A new keyword-only argument ``plan`` is added to all FFT functions in this module. It is reserved for passing in a precomputed plan from libraries providing a FFT backend (such as ``PyFFTW`` and ``mkl-fft``), and it is currently not used in SciPy. `scipy.integrate` improvements ------------------------------------------ `scipy.interpolate` improvements -------------------------------------------- `scipy.io` improvements -------------------------------- `scipy.io.wavfile` error messages are more explicit about what's wrong, and extraneous bytes at the ends of files are ignored instead of raising an error when the data has successfully been read. `scipy.io.loadmat` gained a ``simplify_cells`` parameter, which if set to ``True`` simplifies the structure of the return value if the ``.mat`` file contains cell arrays. ``pathlib.Path`` objects are now supported in `scipy.io` Matrix Market I/O functions `scipy.linalg` improvements -------------------------------------- `scipy.linalg.eigh` has been improved. Now various ``LAPACK`` drivers can be selected at will and also subsets of eigenvalues can be requested via ``subset_by_value`` keyword. Another keyword ``subset_by_index`` is introduced. Keywords ``turbo`` and ``eigvals`` are deprecated. Similarly, standard and generalized Hermitian eigenvalue ``LAPACK`` routines ``?evx`` are added and existing ones now have full ``_lwork`` counterparts. Wrappers for the following ``LAPACK`` routines have been added to `scipy.linalg.lapack`: - ``?getc2``: computes the LU factorization of a general matrix with complete pivoting - ``?gesc2``: solves a linear system given an LU factorization from ``?getc2`` - ``?gejsv``: computes the singular value decomposition of a general matrix with higher accuracy calculation of tiny singular values and their corresponding singular vectors - ``?geqrfp``: computes the QR factorization of a general matrix with non-negative elements on the diagonal of R - ``?gtsvx``: solves a linear system with general tridiagonal matrix - ``?gttrf``: computes the LU factorization of a tridiagonal matrix - ``?gttrs``: solves a linear system given an LU factorization from ``?gttrf`` - ``?ptsvx``: solves a linear system with symmetric positive definite tridiagonal matrix - ``?pttrf``: computes the LU factorization of a symmetric positive definite tridiagonal matrix - ``?pttrs``: solves a linear system given an LU factorization from ``?pttrf`` - ``?pteqr``: computes the eigenvectors and eigenvalues of a positive definite tridiagonal matrix - ``?tbtrs``: solves a linear system with a triangular banded matrix - ``?csd``: computes the Cosine Sine decomposition of an orthogonal/unitary matrix Generalized QR factorization routines (``?geqrf``) now have full ``_lwork`` counterparts. `scipy.linalg.cossin` Cosine Sine decomposition of unitary matrices has been added. The function `scipy.linalg.khatri_rao`, which computes the Khatri-Rao product, was added. The new function `scipy.linalg.convolution_matrix` constructs the Toeplitz matrix representing one-dimensional convolution. `scipy.ndimage` improvements ------------------------------------------ `scipy.optimize` improvements ----------------------------------------- The finite difference numerical differentiation used in various ``minimize`` methods that use gradients has several new features: - 2-point, 3-point, or complex step finite differences can be used. Previously only a 2-step finite difference was available. - There is now the possibility to use a relative step size, previously only an absolute step size was available. - If the ``minimize`` method uses bounds the numerical differentiation strictly obeys those limits. - The numerical differentiation machinery now makes use of a simple cache, which in some cases can reduce the number of function evaluations. - ``minimize``'s ``method= 'powell'`` now supports simple bound constraints There have been several improvements to `scipy.optimize.linprog`: - The ``linprog`` benchmark suite has been expanded considerably. - ``linprog``'s dense pivot-based redundancy removal routine and sparse presolve are faster - When ``scikit-sparse`` is available, solving sparse problems with ``method='interior-point'`` is faster The caching of values when optimizing a function returning both value and gradient together has been improved, avoiding repeated function evaluations when using a ``HessianApproximation`` such as ``BFGS``. ``differential_evolution`` can now use the modern ``np.random.Generator`` as well as the legacy ``np.random.RandomState`` as a seed. `scipy.signal` improvements -------------------------------------- A new optional argument ``include_nyquist`` is added to ``freqz`` functions in this module. It is used for including the last frequency (Nyquist frequency). `scipy.signal.find_peaks_cwt` now accepts a ``window_size`` parameter for the size of the window used to calculate the noise floor. `scipy.sparse` improvements ---------------------------------------- Outer indexing is now faster when using a 2d column vector to select column indices. `scipy.sparse.lil.tocsr` is faster Fixed/improved comparisons between pydata sparse arrays and sparse matrices BSR format sparse multiplication performance has been improved. `scipy.sparse.linalg.LinearOperator` has gained the new ``ndim`` class attribute `scipy.spatial` improvements --------------------------------------- `scipy.spatial.geometric_slerp` has been added to enable geometric spherical linear interpolation on an n-sphere `scipy.spatial.SphericalVoronoi` now supports calculation of region areas in 2D and 3D cases The tree building algorithm used by ``cKDTree`` has improved from quadratic worst case time complexity to loglinear. Benchmarks are also now available for building and querying of balanced/unbalanced kd-trees. `scipy.special` improvements ---------------------------------------- The following functions now have Cython interfaces in `cython_special`: - `scipy.special.erfinv` - `scipy.special.erfcinv` - `scipy.special.spherical_jn` - `scipy.special.spherical_yn` - `scipy.special.spherical_in` - `scipy.special.spherical_kn` `scipy.special.log_softmax` has been added to calculate the logarithm of softmax function. It provides better accuracy than ``log(scipy.special.softmax(x))`` for inputs that make softmax saturate. `scipy.stats` improvements ------------------------------------- The function for generating random samples in `scipy.stats.dlaplace` has been improved. The new function is approximately twice as fast with a memory footprint reduction between 25 % and 60 % (see gh-11069). `scipy.stats` functions that accept a seed for reproducible calculations using random number generation (e.g. random variates from distributions) can now use the modern ``np.random.Generator`` as well as the legacy ``np.random.RandomState`` as a seed. The ``axis`` parameter was added to `scipy.stats.rankdata`. This allows slices of an array along the given axis to be ranked independently. The ``axis`` parameter was added to `scipy.stats.f_oneway`, allowing it to compute multiple one-way ANOVA tests for data stored in n-dimensional arrays. The performance of ``f_oneway`` was also improved for some cases. The PDF and CDF methods for ``stats.geninvgauss`` are now significantly faster as the numerical integration to calculate the CDF uses a Cython based ``LowLevelCallable``. Moments of the normal distribution (`scipy.stats.norm`) are now calculated using analytical formulas instead of numerical integration for greater speed and accuracy Moments and entropy trapezoidal distribution (`scipy.stats.trapz`) are now calculated using analytical formulas instead of numerical integration for greater speed and accuracy Methods of the truncated normal distribution (`scipy.stats.truncnorm`), especially ``_rvs``, are significantly faster after a complete rewrite. The `fit` method of the Laplace distribution, `scipy.stats.laplace`, now uses the analytical formulas for the maximum likelihood estimates of the parameters. Generation of random variates is now thread safe for all SciPy distributions. 3rd-party distributions may need to modify the signature of the ``_rvs()`` method to conform to ``_rvs(self, ..., size=None, random_state=None)``. (A one-time VisibleDeprecationWarning is emitted when using non-conformant distributions.) The Kolmogorov-Smirnov two-sided test statistic distribution (`scipy.stats.kstwo`) was added. Calculates the distribution of the K-S two-sided statistic ``D_n`` for a sample of size n, using a mixture of exact and asymptotic algorithms. The new function ``median_abs_deviation`` replaces the deprecated ``median_absolute_deviation``. The ``wilcoxon`` function now computes the p-value for Wilcoxon's signed rank test using the exact distribution for inputs up to length 25. The function has a new ``mode`` parameter to specify how the p-value is to be computed. The default is ``"auto"``, which uses the exact distribution for inputs up to length 25 and the normal approximation for larger inputs. Added a new Cython-based implementation to evaluate guassian kernel estimates, which should improve the performance of ``gaussian_kde`` The ``winsorize`` function now has a ``nan_policy`` argument for refined handling of ``nan`` input values. The ``binned_statistic_dd`` function with ``statistic="std"`` performance was improved by ~4x. ``scipy.stats.kstest(rvs, cdf,...)`` now handles both one-sample and two-sample testing. The one-sample variation uses `scipy.stats.ksone` (or `scipy.stats.kstwo` with back off to `scipy.stats.kstwobign`) to calculate the p-value. The two-sample variation, invoked if ``cdf`` is array_like, uses an algorithm described by Hodges to compute the probability directly, only backing off to `scipy.stats.kstwo` in case of overflow. The result in both cases is more accurate p-values, especially for two-sample testing with smaller (or quite different) sizes. `scipy.stats.maxwell` performance improvements include a 20 % speed up for `fit()`` and 5 % for ``pdf()`` `scipy.stats.shapiro` and `scipy.stats.jarque_bera` now return a named tuple for greater consistency with other ``stats`` functions Deprecated features ================ `scipy` deprecations ---------------------------- `scipy.special` changes --------------------------------- The ``bdtr``, ``bdtrc``, and ``bdtri`` functions are deprecating non-negative non-integral ``n`` arguments. `scipy.stats` changes ----------------------------- The function ``median_absolute_deviation`` is deprecated. Use ``median_abs_deviation`` instead. The use of the string ``"raw"`` with the ``scale`` parameter of ``iqr`` is deprecated. Use ``scale=1`` instead. Backwards incompatible changes ========================== `scipy.interpolate` changes ------------------------------------- `scipy.linalg` changes ----------------------------- The output signatures of ``?syevr``, ``?heevr`` have been changed from ``w, v, info`` to ``w, v, m, isuppz, info`` The order of output arguments ``w``, ``v`` of ``{gv, gvd, gvx}`` is swapped. `scipy.signal` changes ------------------------------- The output length of `scipy.signal.upfirdn` has been corrected, resulting outputs may now be shorter for some combinations of up/down ratios and input signal and filter lengths. `scipy.signal.resample` now supports a ``domain`` keyword argument for specification of time or frequency domain input. `scipy.stats` changes ----------------------------- Other changes ============= Improved support for leveraging 64-bit integer size from linear algebra backends in several parts of the SciPy codebase. Shims designed to ensure the compatibility of SciPy with Python 2.7 have now been removed. Many warnings due to unused imports and unused assignments have been addressed. Many usage examples were added to function docstrings, and many input validations and intuitive exception messages have been added throughout the codebase. Early stage adoption of type annotations in a few parts of the codebase Authors ======= * @endolith * Hameer Abbasi * ADmitri + * Wesley Alves + * Berkay Antmen + * Sylwester Arabas + * Arne Küderle + * Christoph Baumgarten * Peter Bell * Felix Berkenkamp * Jordão Bragantini + * Clemens Brunner + * Evgeni Burovski * Matthias Bussonnier + * CJ Carey * Derrick Chambers + * Leander Claes + * Christian Clauss * Luigi F. Cruz + * dankleeman * Andras Deak * Milad Sadeghi DM + * jeremie du boisberranger + * Stefan Endres * Malte Esders + * Leo Fang + * felixhekhorn + * Isuru Fernando * Andrew Fowlie * Lakshay Garg + * Gaurav Gijare + * Ralf Gommers * Emmanuelle Gouillart + * Kevin Green + * Martin Grignard + * Maja Gwozdz * gyu-don + * Matt Haberland * hakeemo + * Charles Harris * Alex Henrie * Santi Hernandez + * William Hickman + * Till Hoffmann + * Joseph T. Iosue + * Anany Shrey Jain * Jakob Jakobson * Charles Jekel + * Julien Jerphanion + * Jiacheng-Liu + * Christoph Kecht + * Paul Kienzle + * Reidar Kind + * Dmitry E. Kislov + * Konrad + * Konrad0 * Takuya KOUMURA + * Krzysztof Pióro * Peter Mahler Larsen * Eric Larson * Antony Lee * Gregory Lee + * Gregory R. Lee * Chelsea Liu * Cong Ma + * Kevin Mader + * Maja Gwóźdź + * Alex Marvin + * Matthias Kümmerer * Nikolay Mayorov * Mazay0 + * G. D. McBain * Nicholas McKibben + * Sabrina J. Mielke + * Sebastian J. Mielke + * MiloÅ¡ KomarÄ ević + * Shubham Mishra + * Santiago M. Mola + * Grzegorz Mrukwa + * Peyton Murray * Andrew Nelson * Nico Schlömer * nwjenkins + * odidev + * Sambit Panda * Vikas Pandey + * Rick Paris + * Harshal Prakash Patankar + * Balint Pato + * Matti Picus * Ilhan Polat * poom + * Siddhesh Poyarekar * Vladyslav Rachek + * Bharat Raghunathan * Manu Rajput + * Tyler Reddy * Andrew Reed + * Lucas Roberts * Ariel Rokem * Heshy Roskes * Matt Ruffalo * Atsushi Sakai + * Benjamin Santos + * Christoph Schock + * Lisa Schwetlick + * Chris Simpson + * Leo Singer * Kai Striega * Søren Fuglede Jørgensen * Kale-ab Tessera + * Seth Troisi + * Robert Uhl + * Paul van Mulbregt * Vasiliy + * Isaac Virshup + * Pauli Virtanen * Shakthi Visagan + * Jan Vleeshouwers + * Sam Wallan + * Lijun Wang + * Warren Weckesser * Richard Weiss + * wenhui-prudencemed + * Eric Wieser * Josh Wilson * James Wright + * Ruslan Yevdokymov + * Ziyao Zhang + A total of 129 people contributed to this release. People with a "+" by their names contributed a patch for the first time. This list of names is automatically generated, and may not be fully complete. Issues closed for 1.5.0 ------------------------------- * `#1455 https://github.com/scipy/scipy/issues/1455`__: ellipord does returns bogus values if gstop or gpass are negative... * `#1968 https://github.com/scipy/scipy/issues/1968`__: correlate2d's output does not agree with correlate's output in... * `#2744 https://github.com/scipy/scipy/issues/2744`__: BUG: optimize: '\*\*kw' argument of 'newton_krylov' is not documented * `#4755 https://github.com/scipy/scipy/issues/4755`__: TypeError: data type "https://github.com/scipy/scipy/issues/4921`__: scipy.optimize maxiter option not working as expected * `#5144 https://github.com/scipy/scipy/issues/5144`__: RuntimeWarning on csgraph.shortest_path when edge lengths are... * `#5309 https://github.com/scipy/scipy/issues/5309`__: Documentation of 'hybr' and 'lm' inconsistent in optimize.root * `#6026 https://github.com/scipy/scipy/issues/6026`__: Replace approx_grad with _numdiff.approx_derivative in scipy.optimize * `#6502 https://github.com/scipy/scipy/issues/6502`__: Computing Eigenvalues in an Interval with LAPACK * `#7058 https://github.com/scipy/scipy/issues/7058`__: Errors in special.bdtri and special.bdtr for non-integer k values * `#7700 https://github.com/scipy/scipy/issues/7700`__: SuperLU does not respect perm_c="NATURAL" * `#7895 https://github.com/scipy/scipy/issues/7895`__: Improvements to io.loadmat * `#8205 https://github.com/scipy/scipy/issues/8205`__: ValueError in scipy.linalg.eigvalsh for large matrix * `#8278 https://github.com/scipy/scipy/issues/8278`__: Memory limit for scipy.sparse.linalg.spsolve with scikit-umfpack * `#8327 https://github.com/scipy/scipy/issues/8327`__: scipy.stats.mstats.winsorize NaN handling * `#8341 https://github.com/scipy/scipy/issues/8341`__: scipy.stats.ks_2samp for masked and unmasked data give different... * `#8748 https://github.com/scipy/scipy/issues/8748`__: scipy.stats.kstest for same distribution: p-values nonuniform * `#9042 https://github.com/scipy/scipy/issues/9042`__: optimize: Incorrect statement about \`jac\` in the \`minimize\`... * `#9197 https://github.com/scipy/scipy/issues/9197`__: problem with scipy.signal.butter with 1000+ points array * `#9212 https://github.com/scipy/scipy/issues/9212`__: EIGH very very slow --> suggesting an easy fix * `#9553 https://github.com/scipy/scipy/issues/9553`__: ndimage routines behave badly when output has memory overlap... * `#9632 https://github.com/scipy/scipy/issues/9632`__: ndimage.maximum_filter undocumented behaviour using footprint... * `#9710 https://github.com/scipy/scipy/issues/9710`__: stats.weightedtau([1], [1.0]) SEGFAULTs * `#9797 https://github.com/scipy/scipy/issues/9797`__: Master Tracker for some Kolmogorov-Smirnov test Issues * `#9844 https://github.com/scipy/scipy/issues/9844`__: scipy.signal.upfirdn gives different length matrix versus MATLAB... * `#9872 https://github.com/scipy/scipy/issues/9872`__: scipy.signal.convolve is slower when vectorized * `#9913 https://github.com/scipy/scipy/issues/9913`__: BUG: No dt in StateSpace operations * `#10014 https://github.com/scipy/scipy/issues/10014`__: Distribution names \`weibull_min\`and \`weibull_max\` should... * `#10159 https://github.com/scipy/scipy/issues/10159`__: BUG: stats: chisquare returns incorrect results for arrays of... * `#10302 https://github.com/scipy/scipy/issues/10302`__: scipy.fft: Add a \`plan\` argument * `#10332 https://github.com/scipy/scipy/issues/10332`__: 'Incomplete wav chunk' inconsistent/reason unknown * `#10441 https://github.com/scipy/scipy/issues/10441`__: Remove uses of \`numpy.dual\`? * `#10558 https://github.com/scipy/scipy/issues/10558`__: Document implicit sum in csr_matrix() constructor * `#10788 https://github.com/scipy/scipy/issues/10788`__: LU with full pivoting * `#10841 https://github.com/scipy/scipy/issues/10841`__: Unexpected behavior in linalg.blas.dtrmm wrapper * `#10919 https://github.com/scipy/scipy/issues/10919`__: optimize._lbfgsb setulb() function violates parameter bounds * `#10963 https://github.com/scipy/scipy/issues/10963`__: kstest, ks_2samp: confusing \`mode\` argument descriptions * `#11022 https://github.com/scipy/scipy/issues/11022`__: Unexpected Result in factorial function with NaN input * `#11028 https://github.com/scipy/scipy/issues/11028`__: Documentation error in optimize.minimize * `#11058 https://github.com/scipy/scipy/issues/11058`__: Adding logsoftmax function * `#11076 https://github.com/scipy/scipy/issues/11076`__: ValueError: Unknown wave file format * `#11090 https://github.com/scipy/scipy/issues/11090`__: Misconception of the median absolute deviation in stats? * `#11095 https://github.com/scipy/scipy/issues/11095`__: BUG: find_peaks_cwt test failures in 32-bit Linux wheels * `#11107 https://github.com/scipy/scipy/issues/11107`__: scipy.io.mmread generated an error "TypeError: startswith first... * `#11123 https://github.com/scipy/scipy/issues/11123`__: Add wrapper for ?gttrf/?gttrs * `#11128 https://github.com/scipy/scipy/issues/11128`__: OverflowError in resample_poly (upfirdn) * `#11132 https://github.com/scipy/scipy/issues/11132`__: Possible bug: rv_discret.ppf for percentiles 0 and 100 and loc... * `#11163 https://github.com/scipy/scipy/issues/11163`__: Comparisons between scipy spmatrix and can sparse.SparseArray... * `#11168 https://github.com/scipy/scipy/issues/11168`__: Generalized Pareto variance inaccurate for concentrations near... * `#11169 https://github.com/scipy/scipy/issues/11169`__: Add wrapper for ?geqrfp * `#11184 https://github.com/scipy/scipy/issues/11184`__: 2-sided Kolmogorov Smirnov returns p-value of 1 * `#11185 https://github.com/scipy/scipy/issues/11185`__: The .roots() or solve() function of scipy.interpolate.CubicHermiteSpline... * `#11190 https://github.com/scipy/scipy/issues/11190`__: Add wrapper for ?tbtrs * `#11200 https://github.com/scipy/scipy/issues/11200`__: Can no longer slice csr_matrix in 1.3.0 * `#11207 https://github.com/scipy/scipy/issues/11207`__: _minimize_scalar_bounded: reference before assignment * `#11216 https://github.com/scipy/scipy/issues/11216`__: linprog: interior-point: Cholmod reordering can be reused * `#11223 https://github.com/scipy/scipy/issues/11223`__: Add wrappers for ?pttrf, ?pttrs * `#11224 https://github.com/scipy/scipy/issues/11224`__: Add wrapperfor ?pteqr * `#11235 https://github.com/scipy/scipy/issues/11235`__: MAINT: Missleading Error Message for IIR Filter * `#11244 https://github.com/scipy/scipy/issues/11244`__: Missing reference in \`scipy.optimize.line_search\` * `#11262 https://github.com/scipy/scipy/issues/11262`__: Hermitian Eigenvalue Problem eigh() API and wrapper change proposal * `#11266 https://github.com/scipy/scipy/issues/11266`__: Sparse matrix constructor data type detection changes on Numpy... * `#11270 https://github.com/scipy/scipy/issues/11270`__: CI failing: Travis CI Py36 refguide and Linux_Python_36_32bit_full... * `#11279 https://github.com/scipy/scipy/issues/11279`__: linalg.eigh checks whole array for finite values * `#11295 https://github.com/scipy/scipy/issues/11295`__: CI: azure does not auto-cancel old jobs on pushes * `#11299 https://github.com/scipy/scipy/issues/11299`__: stats.truncnorm.rvs 100x slower in v1.4.x than v1.3.3 * `#11315 https://github.com/scipy/scipy/issues/11315`__: BUG: special: rgamma on negative integers smaller -34 * `#11319 https://github.com/scipy/scipy/issues/11319`__: Missing \`int64_t\` declaration in rectangular_lsap.cpp * `#11323 https://github.com/scipy/scipy/issues/11323`__: Compilation failure due to missing symbol pthread_atfork * `#11332 https://github.com/scipy/scipy/issues/11332`__: BUG: directed_hausdorff distance on sets u and v when u is a... * `#11350 https://github.com/scipy/scipy/issues/11350`__: Khatri-Rao product * `#11354 https://github.com/scipy/scipy/issues/11354`__: ENH: Add wrapper for ?gejsv * `#11361 https://github.com/scipy/scipy/issues/11361`__: Dropped NaN in eval_genlaguerre function * `#11363 https://github.com/scipy/scipy/issues/11363`__: Dropped NaN in hyperu function * `#11365 https://github.com/scipy/scipy/issues/11365`__: scipy.stats.binned_statistic regressed in v1.4.0 * `#11369 https://github.com/scipy/scipy/issues/11369`__: Dropped NaN in eval_hermite * `#11370 https://github.com/scipy/scipy/issues/11370`__: Dropped NaN in eval_gegenbauer * `#11373 https://github.com/scipy/scipy/issues/11373`__: Add wrapper for ?gtsvx * `#11374 https://github.com/scipy/scipy/issues/11374`__: Add wrapper for ?ptsvx * `#11391 https://github.com/scipy/scipy/issues/11391`__: csgraph.minimum_spanning_tree loses precision * `#11398 https://github.com/scipy/scipy/issues/11398`__: Update stats to cope with \`np.random.Generator\` machinery * `#11412 https://github.com/scipy/scipy/issues/11412`__: Array copying causes unwanted type casting from complex to float... * `#11415 https://github.com/scipy/scipy/issues/11415`__: Where is the Wiener Filter derived from? * `#11416 https://github.com/scipy/scipy/issues/11416`__: _lib._util.getargspec_no_self is missing KEYWORD_ONLY support * `#11428 https://github.com/scipy/scipy/issues/11428`__: Documentation on SHGO inequality constraints appears contradictory * `#11429 https://github.com/scipy/scipy/issues/11429`__: Add LAPACK's ZUNCSD cosine sine decomposition * `#11438 https://github.com/scipy/scipy/issues/11438`__: run_dualannealing passes bounds incorrectly in benchmarks/optimize.py * `#11441 https://github.com/scipy/scipy/issues/11441`__: Can't run optimize benchmarks * `#11442 https://github.com/scipy/scipy/issues/11442`__: Chebyshev weights * `#11448 https://github.com/scipy/scipy/issues/11448`__: Wrongly typed comparison in integrate.quad * `#11458 https://github.com/scipy/scipy/issues/11458`__: BUG: maximum_bipartite_matching produces infeasible solution * `#11460 https://github.com/scipy/scipy/issues/11460`__: CI failing: 2 Travis CI tests fail with numpy build or version... * `#11462 https://github.com/scipy/scipy/issues/11462`__: Bug on "++" initialization on "kmeans2" * `#11464 https://github.com/scipy/scipy/issues/11464`__: Shouldn't data type of KDE evaluation should be like in the input... * `#11468 https://github.com/scipy/scipy/issues/11468`__: performance of binned_statistics_2d 100x slowdown from 1.3.2... * `#11484 https://github.com/scipy/scipy/issues/11484`__: Callback function doesn't give the same value as the one being... * `#11492 https://github.com/scipy/scipy/issues/11492`__: Confusing dendrogram labelling * `#11493 https://github.com/scipy/scipy/issues/11493`__: scipy.optimize.least_squares fails if the return array of the... * `#11494 https://github.com/scipy/scipy/issues/11494`__: Error performing kronecker product between large sparse vectors * `#11503 https://github.com/scipy/scipy/issues/11503`__: medfilt produces 0 on input of length 1 * `#11529 https://github.com/scipy/scipy/issues/11529`__: Pyflakes generates almost 700 warnings. * `#11566 https://github.com/scipy/scipy/issues/11566`__: irfft/irfft2/irfftn docs are slightly confusing re: input type. * `#11572 https://github.com/scipy/scipy/issues/11572`__: least_squares: too small tolerances not catched with method='lm' * `#11581 https://github.com/scipy/scipy/issues/11581`__: DOC: scipy.interpolate.RectSphereBivariateSpline * `#11586 https://github.com/scipy/scipy/issues/11586`__: Differential evolution breaks with LinearConstraints with sparse... * `#11595 https://github.com/scipy/scipy/issues/11595`__: scipy.spatial.cKDTree construction slow for some datasets * `#11598 https://github.com/scipy/scipy/issues/11598`__: output of special.voigt_profile when sigma=0 * `#11601 https://github.com/scipy/scipy/issues/11601`__: linalg tests failing in runtests.py * `#11602 https://github.com/scipy/scipy/issues/11602`__: scipy.optimize.linear_sum_assignment returns reverse diagonal... * `#11610 https://github.com/scipy/scipy/issues/11610`__: Analytic formula for normal moments * `#11611 https://github.com/scipy/scipy/issues/11611`__: Build failure with gfortran 10 * `#11613 https://github.com/scipy/scipy/issues/11613`__: TST, MAINT: test_quadpack TestCtypesQuad wasn't fully migrated... * `#11630 https://github.com/scipy/scipy/issues/11630`__: SmoothBivariateSpline bbox parameter * `#11635 https://github.com/scipy/scipy/issues/11635`__: typo in docstring of scipy.stats.norminvgauss * `#11637 https://github.com/scipy/scipy/issues/11637`__: BUG: core dumps when calling scipy.interpolate.interp1d with... * `#11638 https://github.com/scipy/scipy/issues/11638`__: better documentation for 'return_all' option in minimize(Nelder... * `#11652 https://github.com/scipy/scipy/issues/11652`__: TST, MAINT: CI failures for pre-release NumPy wheels * `#11659 https://github.com/scipy/scipy/issues/11659`__: optimize.fmin_l_bfgs_b needs bound check and appropiate error... * `#11660 https://github.com/scipy/scipy/issues/11660`__: BUG/ENH: distribution.ncf with nc=0 returns nan * `#11661 https://github.com/scipy/scipy/issues/11661`__: scipy.ndimage.convolve1d and correlate1d don't behave properly... * `#11669 https://github.com/scipy/scipy/issues/11669`__: p-value varies with the order of the data * `#11676 https://github.com/scipy/scipy/issues/11676`__: documentation of scipy.spatial.HalfspaceIntersection: wrong method... * `#11685 https://github.com/scipy/scipy/issues/11685`__: Rotation cannot be expressed as matrix * `#11686 https://github.com/scipy/scipy/issues/11686`__: MAINT: mypy imports of Cython "modules" * `#11693 https://github.com/scipy/scipy/issues/11693`__: TestDifferentialEvolutionSolver::test_L4 failing in CI * `#11696 https://github.com/scipy/scipy/issues/11696`__: DOC: incorrect compiler information for macOS in docs * `#11709 https://github.com/scipy/scipy/issues/11709`__: eigh() tests fail to pass, crash Python with seemingly ramdom... * `#11763 https://github.com/scipy/scipy/issues/11763`__: Small error in gamma continuous rv fit comments * `#11769 https://github.com/scipy/scipy/issues/11769`__: truncnorm.rvs Weird Behaviors * `#11770 https://github.com/scipy/scipy/issues/11770`__: crash in TestEigh::test_value_subsets * `#11795 https://github.com/scipy/scipy/issues/11795`__: trapz distribution mean computed using single precision * `#11800 https://github.com/scipy/scipy/issues/11800`__: Segmentation fault in scipy.odr for multidimensional independent... * `#11811 https://github.com/scipy/scipy/issues/11811`__: pyflakes silently failing on travis-ci * `#11826 https://github.com/scipy/scipy/issues/11826`__: Error with _fblas * `#11827 https://github.com/scipy/scipy/issues/11827`__: \`fft.tests.test_numpy.test_multiprocess\` hangs on Python3.8... * `#11835 https://github.com/scipy/scipy/issues/11835`__: tests with \`multiprocessing\` hang on Python 3.8 on macOS * `#11839 https://github.com/scipy/scipy/issues/11839`__: linalg.expm returns nans with RuntimeWarning: overflow encountered... * `#11856 https://github.com/scipy/scipy/issues/11856`__: Documentation of fit methods for \`weibull_min\` and \`exponweib\`... * `#11868 https://github.com/scipy/scipy/issues/11868`__: Function always evaluated twice when using HessianUpdateStrategy... * `#11875 https://github.com/scipy/scipy/issues/11875`__: Typo in the docstring of simps() * `#11877 https://github.com/scipy/scipy/issues/11877`__: kmeans2 '++' method is orders of magnitude slower than sklearn.cluster.KMeans() * `#11884 https://github.com/scipy/scipy/issues/11884`__: The upper code lines are dead code * `#11886 https://github.com/scipy/scipy/issues/11886`__: Array shape mismatch in scipy.optimize * `#11892 https://github.com/scipy/scipy/issues/11892`__: BUG: stats: Incorrect handling of edges cases by ttest_rel and... * `#11908 https://github.com/scipy/scipy/issues/11908`__: LinearOperator should have ndim attribute * `#11910 https://github.com/scipy/scipy/issues/11910`__: Documentation missing for what M is in init argument * `#11922 https://github.com/scipy/scipy/issues/11922`__: macOS actions CI has started failing in last couple of days. * `#11928 https://github.com/scipy/scipy/issues/11928`__: DOC: signal: Wrong description for sepfir2d, cspline2d, qspline2d * `#11944 https://github.com/scipy/scipy/issues/11944`__: curve_fit documentation unclear on default value of absolute_sigma * `#11945 https://github.com/scipy/scipy/issues/11945`__: Add a (potentially temporary) py.typed file? * `#11949 https://github.com/scipy/scipy/issues/11949`__: ValueError 'k exceeds matrix dimensions' for sparse.diagonal()... * `#11951 https://github.com/scipy/scipy/issues/11951`__: BUG: asv benchmark failed because of cython version * `#11967 https://github.com/scipy/scipy/issues/11967`__: BLD: Azure windows runs complain about drives * `#11973 https://github.com/scipy/scipy/issues/11973`__: oaconvolve(a,b,'same') differs in shape from convolve(a,b,'same')... * `#12002 https://github.com/scipy/scipy/issues/12002`__: pybind11 license * `#12003 https://github.com/scipy/scipy/issues/12003`__: MAINT: circular SphericalVoronoi input * `#12015 https://github.com/scipy/scipy/issues/12015`__: Reordering of CSC matrix breaks when you go above int32 limits * `#12031 https://github.com/scipy/scipy/issues/12031`__: Documentation Rendering Issues Visible in CircleCI Artifacts * `#12037 https://github.com/scipy/scipy/issues/12037`__: MAINT, CI: new Cython 3.0a4 issue * `#12087 https://github.com/scipy/scipy/issues/12087`__: DOC: some odr models are missing docs * `#12119 https://github.com/scipy/scipy/issues/12119`__: signal.fftconvolve no longer convolves types f8 and numpy.float64 * `#12149 https://github.com/scipy/scipy/issues/12149`__: Documentation of Rosenbrock function * `#12173 https://github.com/scipy/scipy/issues/12173`__: Large memory usage when indexing sparse matrices with \`np.ix_\` * `#12178 https://github.com/scipy/scipy/issues/12178`__: BUG: stats: Some discrete distributions don't accept lists of... * `#12220 https://github.com/scipy/scipy/issues/12220`__: BUG, REL: gh_lists.py compromised scraping * `#12239 https://github.com/scipy/scipy/issues/12239`__: BUG: median absolute deviation handling of nan Pull requests for 1.5.0 ------------------------------ * `#6510 https://github.com/scipy/scipy/pull/6510`__: Add Eigenvalue Range Functionality for Symmetric Eigenvalue Problems * `#9525 https://github.com/scipy/scipy/pull/9525`__: BUG: SuperLU 'NATURAL' order applies a column permutation * `#9634 https://github.com/scipy/scipy/pull/9634`__: Add the number of Jacobian evaluations to the output of L-BFGS-B. * `#9719 https://github.com/scipy/scipy/pull/9719`__: ENH: Added kstwo probability distribution for two-sided one-sample... * `#9783 https://github.com/scipy/scipy/pull/9783`__: WIP: optimize: added (dense) interpolative decomposition redundancy... * `#10053 https://github.com/scipy/scipy/pull/10053`__: Adding docstring to weibull_min and weibull_max based on issue... * `#10136 https://github.com/scipy/scipy/pull/10136`__: DEP: Add warning to linprog_verbose_callback * `#10380 https://github.com/scipy/scipy/pull/10380`__: ENH: add geometric_slerp * `#10602 https://github.com/scipy/scipy/pull/10602`__: MAINT: optimize: refactor common linprog arguments into namedtuple * `#10648 https://github.com/scipy/scipy/pull/10648`__: Bounds for the Powell minimization method * `#10673 https://github.com/scipy/scipy/pull/10673`__: ENH: approx_fprime --> approx_derivative * `#10759 https://github.com/scipy/scipy/pull/10759`__: ENH: calculation of region areas in spatial.SphericalVoronoi * `#10762 https://github.com/scipy/scipy/pull/10762`__: BENCH: optimize: more comprehensive linprog benchmarking * `#10796 https://github.com/scipy/scipy/pull/10796`__: ENH exact p-values of wilcoxon test in scipy.stats * `#10797 https://github.com/scipy/scipy/pull/10797`__: ENH: linalg: LU with full pivoting (wrappers for ?getc2/?gesc2) * `#10824 https://github.com/scipy/scipy/pull/10824`__: ENH: Fast gaussian kernel estimator * `#10942 https://github.com/scipy/scipy/pull/10942`__: BUG: prevent bound violation in L-BFGS-B optimize method * `#11003 https://github.com/scipy/scipy/pull/11003`__: ENH: add scipy.linalg.convolution_matrix * `#11023 https://github.com/scipy/scipy/pull/11023`__: improving error message for cubic-interpolate with duplicates * `#11045 https://github.com/scipy/scipy/pull/11045`__: MAINT: make bdt{r,rc,ri}() functions accept double n,k args +... * `#11063 https://github.com/scipy/scipy/pull/11063`__: Fix documentation error in optimize.minimize * `#11069 https://github.com/scipy/scipy/pull/11069`__: ENH: stats.dlaplace.rvs improvements * `#11071 https://github.com/scipy/scipy/pull/11071`__: DOC: Added examples to maximum_position in ndimage * `#11075 https://github.com/scipy/scipy/pull/11075`__: DOC: Update stylistic consistency in multiple files * `#11097 https://github.com/scipy/scipy/pull/11097`__: BUG: stats: fixing chisquare to return correct results for arrays... * `#11110 https://github.com/scipy/scipy/pull/11110`__: ENH: special: Cythonise erfinv, erfcinv * `#11112 https://github.com/scipy/scipy/pull/11112`__: BUG: special: Return NaN outside the domain of \`eval_hermite\` * `#11114 https://github.com/scipy/scipy/pull/11114`__: BUG: special: fix \`hyp1f1\` for nonnegative integral \`a\` and... * `#11115 https://github.com/scipy/scipy/pull/11115`__: DOC: special: add docstrings for \`kei\`, \`ker\`, \`keip\`,... * `#11130 https://github.com/scipy/scipy/pull/11130`__: ENH: support for circular input * `#11136 https://github.com/scipy/scipy/pull/11136`__: BUG: expm handling of empty input * `#11138 https://github.com/scipy/scipy/pull/11138`__: DOC: stylistic consistency, punctuation, etc. * `#11139 https://github.com/scipy/scipy/pull/11139`__: MAINT: cluster: use cython_blas, remove handwritten BLAS wrappers * `#11146 https://github.com/scipy/scipy/pull/11146`__: DOC: update docs on bp parameter for detrend * `#11151 https://github.com/scipy/scipy/pull/11151`__: DOC: special: add docstrings for \`bei\`, \`ber\`, \`beip\`,... * `#11156 https://github.com/scipy/scipy/pull/11156`__: ENH: add input validation for ellipord. * `#11157 https://github.com/scipy/scipy/pull/11157`__: DOC: stylistic revision, punctuation, consistency * `#11160 https://github.com/scipy/scipy/pull/11160`__: ignore warning on 0 \* inf in basin hopping * `#11162 https://github.com/scipy/scipy/pull/11162`__: DOC: minor stylistic revision, undo changes * `#11164 https://github.com/scipy/scipy/pull/11164`__: ENH/ BUG: Pydata sparse equality * `#11171 https://github.com/scipy/scipy/pull/11171`__: Fix dtype validation of "seuclidean" metric V parameter * `#11177 https://github.com/scipy/scipy/pull/11177`__: BUG: stats: Improve genpareto stats calculations. * `#11180 https://github.com/scipy/scipy/pull/11180`__: MAINT: stats: Some clean up in test_distributions.py. * `#11187 https://github.com/scipy/scipy/pull/11187`__: ENH: add functionality log_softmax to SciPy.special. * `#11188 https://github.com/scipy/scipy/pull/11188`__: MAINT: add rvs method to argus in scipy.stats * `#11196 https://github.com/scipy/scipy/pull/11196`__: DOC: special: add to docstrings of Kelvin zeros functions * `#11202 https://github.com/scipy/scipy/pull/11202`__: BUG: fix edge counting in shortest_path * `#11218 https://github.com/scipy/scipy/pull/11218`__: BUG: scipy/interpolate: fix PPoly/Cubic\*Spline roots() extrapolation... * `#11225 https://github.com/scipy/scipy/pull/11225`__: Add a warning to constant input for spearmanr() function * `#11226 https://github.com/scipy/scipy/pull/11226`__: Speed up of interior-point method for cholesky solver * `#11229 https://github.com/scipy/scipy/pull/11229`__: BUG: Explicit dtype specification in _upfirdn.py * `#11230 https://github.com/scipy/scipy/pull/11230`__: Additional citation for optimize tutorial * `#11231 https://github.com/scipy/scipy/pull/11231`__: Adds SLSQP test for duplicate f-evals (#10738) * `#11236 https://github.com/scipy/scipy/pull/11236`__: MAINT: Improved error message for Wn range in iirfilter. * `#11245 https://github.com/scipy/scipy/pull/11245`__: ENH: optimize: dense redundancy removal routine optimizations * `#11247 https://github.com/scipy/scipy/pull/11247`__: MAINT: Remove _lib/_numpy_compat.py * `#11248 https://github.com/scipy/scipy/pull/11248`__: BUG: rv_discrete.ppf() to handle loc * `#11251 https://github.com/scipy/scipy/pull/11251`__: DOC: add reference for linesearch zoom algorithm * `#11253 https://github.com/scipy/scipy/pull/11253`__: BUG: fix kendalltau issue where p-value becomes >1 * `#11254 https://github.com/scipy/scipy/pull/11254`__: MAINT: make special.factorial handle nan correctly * `#11256 https://github.com/scipy/scipy/pull/11256`__: DOC: Updated documentation for scipy.linalg.qr * `#11265 https://github.com/scipy/scipy/pull/11265`__: Fix: Can no longer slice csr_matrix in 1.3.0 * `#11267 https://github.com/scipy/scipy/pull/11267`__: BUG: Rework the scaling in the ks_2samp two-sided exact test. * `#11268 https://github.com/scipy/scipy/pull/11268`__: DOC: example of NonLinearConstraint * `#11269 https://github.com/scipy/scipy/pull/11269`__: Fix: Sparse matrix constructor data type detection changes on... * `#11276 https://github.com/scipy/scipy/pull/11276`__: BLD: update minimum Python, NumPy, Cython, Pybind11 versions * `#11277 https://github.com/scipy/scipy/pull/11277`__: MAINT: Cleanup conditionals for unsupported numpy verisons * `#11278 https://github.com/scipy/scipy/pull/11278`__: MAINT: Cleanup stats.iqr workarounds for unsupported NumPy versions * `#11282 https://github.com/scipy/scipy/pull/11282`__: TST/CI: improve traceback formatting for test failures * `#11284 https://github.com/scipy/scipy/pull/11284`__: fix docs & behavior for mode sequences in ndimage filters * `#11285 https://github.com/scipy/scipy/pull/11285`__: DOC: special: complete the docstrings of Chi-square functions * `#11286 https://github.com/scipy/scipy/pull/11286`__: BUG: make loadmat/savemat file opening close resources correctly * `#11287 https://github.com/scipy/scipy/pull/11287`__: CI: skip Azure and TravisCI builds on merges and direct pushes... * `#11288 https://github.com/scipy/scipy/pull/11288`__: DOC: Fix import in scipy.io.wavfile.read sample code * `#11289 https://github.com/scipy/scipy/pull/11289`__: BUG: Use context manager for open * `#11290 https://github.com/scipy/scipy/pull/11290`__: MAINT: Remove _lib._version in favour of _lib._pep440 * `#11292 https://github.com/scipy/scipy/pull/11292`__: DOC: special: add docstrings for various convenience functions * `#11293 https://github.com/scipy/scipy/pull/11293`__: DOC: special: fix typo in \`chdtri\` docstring * `#11296 https://github.com/scipy/scipy/pull/11296`__: DOC: special: add to docstrings of Bessel zeros and derivatives * `#11297 https://github.com/scipy/scipy/pull/11297`__: DOC: special: add parameters/returns sections for Bessel integrals * `#11300 https://github.com/scipy/scipy/pull/11300`__: MAINT: Update vendored uarray version * `#11301 https://github.com/scipy/scipy/pull/11301`__: CI: azure conditions should require succeeded() * `#11302 https://github.com/scipy/scipy/pull/11302`__: ENH: build infrastructure for ILP64 BLAS + ARPACK conversion * `#11303 https://github.com/scipy/scipy/pull/11303`__: DOC: special: fix typo in \`besselpoly\` docstring * `#11304 https://github.com/scipy/scipy/pull/11304`__: ENH: MAINT: Rewrite of eigh() and relevant wrappers * `#11306 https://github.com/scipy/scipy/pull/11306`__: TST: skip test_aligned_mem linalg test that is crashing on ppcle64 * `#11307 https://github.com/scipy/scipy/pull/11307`__: MAINT: Fix typo 'solutuion' -> 'solution' * `#11308 https://github.com/scipy/scipy/pull/11308`__: ENH: do not create 1d array out of a scalar * `#11310 https://github.com/scipy/scipy/pull/11310`__: MAINT: clean up object array creation, scalar/1d confusion * `#11311 https://github.com/scipy/scipy/pull/11311`__: DOC: Specify custom callable option for metric in cluster.hierarchy.fclusterdata * `#11316 https://github.com/scipy/scipy/pull/11316`__: BUG: special: fix behavior for \`rgamma\` zeros * `#11317 https://github.com/scipy/scipy/pull/11317`__: BUG: fix floating-point literal comparisons under C99 * `#11318 https://github.com/scipy/scipy/pull/11318`__: TST: optimize: mark two linprog tests for skipping * `#11320 https://github.com/scipy/scipy/pull/11320`__: BUG: Include \`int64_t\` declaration to \`rectangular_lsap.cpp\` * `#11330 https://github.com/scipy/scipy/pull/11330`__: MAINT: Update vendored pypocketfft version * `#11333 https://github.com/scipy/scipy/pull/11333`__: BUG: directed_hausdorff subset fix * `#11335 https://github.com/scipy/scipy/pull/11335`__: [ENH] sparse: Loosen check for sparse outer indexing fast path * `#11337 https://github.com/scipy/scipy/pull/11337`__: Undefined name 'e' in pavement.py * `#11338 https://github.com/scipy/scipy/pull/11338`__: scipyoptdoc.py: Remove unused variable 'sixu' * `#11340 https://github.com/scipy/scipy/pull/11340`__: xrange() was removed in Python 3 in favor of range() * `#11342 https://github.com/scipy/scipy/pull/11342`__: range() was removed in Py3 in _binned_statistic.py * `#11343 https://github.com/scipy/scipy/pull/11343`__: BUG: constants: fix 'exact' values table * `#11347 https://github.com/scipy/scipy/pull/11347`__: ENH: add input validation function and apply it to needed functions * `#11348 https://github.com/scipy/scipy/pull/11348`__: MAINT: remove six.string_types usages * `#11349 https://github.com/scipy/scipy/pull/11349`__: MAINT: minor doc fix _minimize_trustregion_constr * `#11353 https://github.com/scipy/scipy/pull/11353`__: MAINT: py3 remove various six usages * `#11358 https://github.com/scipy/scipy/pull/11358`__: ENH: optimize: Use CSR format instead of LIL for speed * `#11362 https://github.com/scipy/scipy/pull/11362`__: MAINT: sys.version_info >= 3.5 * `#11364 https://github.com/scipy/scipy/pull/11364`__: ENH: cache square of sums for f_oneway * `#11368 https://github.com/scipy/scipy/pull/11368`__: ENH: add optional argument, "include_nyquist", for freqz() * `#11372 https://github.com/scipy/scipy/pull/11372`__: BENCH: optimize: added linprog presolve benchmarks * `#11376 https://github.com/scipy/scipy/pull/11376`__: ENH: Add wrapper for ?gttrf/?gttrs * `#11377 https://github.com/scipy/scipy/pull/11377`__: MAINT: Remove Python 2 code from tools/authors.py * `#11378 https://github.com/scipy/scipy/pull/11378`__: ENH (WIP): Python wrapper for ?tbtrs * `#11379 https://github.com/scipy/scipy/pull/11379`__: MAINT: Remove six.with_metaclass from benchmarks/cython_special.py * `#11380 https://github.com/scipy/scipy/pull/11380`__: BUG: sparse/isolve: bicg and qmr don't treat x0 correctly * `#11382 https://github.com/scipy/scipy/pull/11382`__: MAINT: remove error throw in binned_statistic_dd() on non-finite... * `#11383 https://github.com/scipy/scipy/pull/11383`__: MAINT: _lib: remove py2 compat shims in getargspec * `#11384 https://github.com/scipy/scipy/pull/11384`__: MAINT: Use numpy scalar types directly * `#11385 https://github.com/scipy/scipy/pull/11385`__: ENH: special: add spherical Bessel functions to \`cython_special\` * `#11389 https://github.com/scipy/scipy/pull/11389`__: MAINT: line.startswith shouldn't be bytes * `#11393 https://github.com/scipy/scipy/pull/11393`__: ENH: Speed up truncnorm's ppf()and rvs() methods * `#11394 https://github.com/scipy/scipy/pull/11394`__: MAINT: Remove self._size (and self._random_state) from stats... * `#11395 https://github.com/scipy/scipy/pull/11395`__: correction in error message (%d->%g format) * `#11396 https://github.com/scipy/scipy/pull/11396`__: DOC: revert gh10540, removing mtrand * `#11397 https://github.com/scipy/scipy/pull/11397`__: MAINT: differential_evolution accepts np.random.Generator * `#11402 https://github.com/scipy/scipy/pull/11402`__: ENH: stats can use np.random.Generator * `#11404 https://github.com/scipy/scipy/pull/11404`__: ENH: add docstring of butter() for transfer function syntax problem * `#11405 https://github.com/scipy/scipy/pull/11405`__: DOC: Fix "see also" for SmoothBivariateSpline * `#11408 https://github.com/scipy/scipy/pull/11408`__: ENH: Add a \`plan\` argument to FFT functions in \`scipy.fft\` * `#11411 https://github.com/scipy/scipy/pull/11411`__: MAINT: check minimize duplicate evaluations * `#11418 https://github.com/scipy/scipy/pull/11418`__: ENH: Linalg: Python wrapper for ?geqrfp * `#11419 https://github.com/scipy/scipy/pull/11419`__: TST: Python 3.7 mac OS gcc multibuild fix * `#11423 https://github.com/scipy/scipy/pull/11423`__: ENH: Add tool to lint diffs * `#11425 https://github.com/scipy/scipy/pull/11425`__: FIX: _array_newton should preserve complex inputs * `#11426 https://github.com/scipy/scipy/pull/11426`__: MAINT: licence for global optimization benchmarks * `#11431 https://github.com/scipy/scipy/pull/11431`__: Make median_absolute_deviation scale argument aligned w/iqr * `#11432 https://github.com/scipy/scipy/pull/11432`__: Fix error message typo * `#11433 https://github.com/scipy/scipy/pull/11433`__: DOC: Remove L from longs * `#11434 https://github.com/scipy/scipy/pull/11434`__: MAINT: Python3 improvements to refguide_check.py * `#11435 https://github.com/scipy/scipy/pull/11435`__: DOC: Update runtest --parallel help * `#11436 https://github.com/scipy/scipy/pull/11436`__: MAINT: Remove checks for sys.version < 3.5 * `#11437 https://github.com/scipy/scipy/pull/11437`__: DOC: Fix documentation issue * `#11439 https://github.com/scipy/scipy/pull/11439`__: Support path objects (PEP 519) in mmio functions * `#11440 https://github.com/scipy/scipy/pull/11440`__: correct bounds pass in run_dualannealing for benchmarks/optimize.py * `#11443 https://github.com/scipy/scipy/pull/11443`__: BENCH: optimize_linprog remove ImportError exception * `#11453 https://github.com/scipy/scipy/pull/11453`__: BUG: sparse: convert csc/csr indices to int64 as needed * `#11454 https://github.com/scipy/scipy/pull/11454`__: DOC: Remove caveat on \`maximum_bipartite_matching\` * `#11455 https://github.com/scipy/scipy/pull/11455`__: BUG: Fix _lib._util.getargspec_no_self lack of KEYWORD_ONLY support. * `#11456 https://github.com/scipy/scipy/pull/11456`__: Implementation of khatri_rao product * `#11459 https://github.com/scipy/scipy/pull/11459`__: BUG: fix augmentation being broken in maximum_bipartite_matching * `#11461 https://github.com/scipy/scipy/pull/11461`__: MAINT: minor spelling corrections in comments in SciPy.sparse.linalg.arpack * `#11467 https://github.com/scipy/scipy/pull/11467`__: [MRG] Make result data type of KDE evaluation like in the input... * `#11469 https://github.com/scipy/scipy/pull/11469`__: Update integrate.quad documentation * `#11472 https://github.com/scipy/scipy/pull/11472`__: Fixed result typo * `#11476 https://github.com/scipy/scipy/pull/11476`__: DOC: stats: Copy-edit the anderson docstring. * `#11478 https://github.com/scipy/scipy/pull/11478`__: ENH: avoid unnecessary array copies in matrix product * `#11481 https://github.com/scipy/scipy/pull/11481`__: BUG: Make special.hyperu return nan if any argument is nan * `#11483 https://github.com/scipy/scipy/pull/11483`__: BUG: Fixed \`_kpp\` initialization on \`scipy.cluster.vq\`, closing... * `#11485 https://github.com/scipy/scipy/pull/11485`__: ENH: Update docstring of class KrylovJacobian to fix #2744 * `#11486 https://github.com/scipy/scipy/pull/11486`__: BUG: make special.eval_hermite return nan if second argument... * `#11487 https://github.com/scipy/scipy/pull/11487`__: ENH: improve docstring of correlate and correlate2d to fix #1968 * `#11488 https://github.com/scipy/scipy/pull/11488`__: FIX: change "func -> fun" of scipy.optimize _root.py to solve... * `#11489 https://github.com/scipy/scipy/pull/11489`__: BUG: fixes typo introduced in PR #11253 in stats.mstats.kendalltau() * `#11490 https://github.com/scipy/scipy/pull/11490`__: DOC: fix typo in scipy/io/matlab/mio4.py * `#11495 https://github.com/scipy/scipy/pull/11495`__: MAINT: refactor slsqp to fix issue in callback function * `#11498 https://github.com/scipy/scipy/pull/11498`__: [DOC] mention graph cuts in maximum flow docstring * `#11499 https://github.com/scipy/scipy/pull/11499`__: DOC: Improve documentation of scipy.signal.signaltools.wiener * `#11506 https://github.com/scipy/scipy/pull/11506`__: DOC: Fix typo in documentation of scipy.stats.morestats * `#11508 https://github.com/scipy/scipy/pull/11508`__: ENH: avoid copy on sparse __init__ when dtype is given * `#11509 https://github.com/scipy/scipy/pull/11509`__: ENH: avoid unnecessary array copies in matrix product (again) * `#11510 https://github.com/scipy/scipy/pull/11510`__: [DOC] An ex. for creating arbitrary size tri-diagonal * `#11511 https://github.com/scipy/scipy/pull/11511`__: TST: pin numba for Travis/sparse * `#11513 https://github.com/scipy/scipy/pull/11513`__: TST: disable NumPy cache dir ppc64le * `#11514 https://github.com/scipy/scipy/pull/11514`__: BUG: make special.eval_genlaguerre return nan if passed nan * `#11517 https://github.com/scipy/scipy/pull/11517`__: ENH: improve sparse.lil.tocsr performance * `#11519 https://github.com/scipy/scipy/pull/11519`__: Fix fresnel documentation * `#11520 https://github.com/scipy/scipy/pull/11520`__: BUG: make special.eval_gegenbauer return nan if passed nan * `#11524 https://github.com/scipy/scipy/pull/11524`__: ENH: Cosine Sine Decomposition * `#11526 https://github.com/scipy/scipy/pull/11526`__: BUG: fix SLSQP max iteration setting to fix #4921 * `#11527 https://github.com/scipy/scipy/pull/11527`__: ENH: improve docstring of weibull_min_gen and weibull_max_gen... * `#11530 https://github.com/scipy/scipy/pull/11530`__: MAINT: Removed 3 unused imports, 3 unused assignments from ndimage. * `#11531 https://github.com/scipy/scipy/pull/11531`__: DOC: fix typos in bdtr and bdtrc from gh PR 11045 * `#11532 https://github.com/scipy/scipy/pull/11532`__: MAINT: Fixed several unused imports and unused assignments from... * `#11533 https://github.com/scipy/scipy/pull/11533`__: MAINT: Fixed about 100 unused imports, unused assignment warnings... * `#11534 https://github.com/scipy/scipy/pull/11534`__: FIX: Allow non-native byte order inputs to scipy.fft * `#11535 https://github.com/scipy/scipy/pull/11535`__: MAINT: Fixed several unused imports in _lib. * `#11536 https://github.com/scipy/scipy/pull/11536`__: MAINT: Fixed several unused imports and unused assignments in... * `#11537 https://github.com/scipy/scipy/pull/11537`__: MAINT: Removed an unused import in scipy/constants. * `#11538 https://github.com/scipy/scipy/pull/11538`__: MAINT: Fixed several unused imports in scipy/fft. * `#11539 https://github.com/scipy/scipy/pull/11539`__: MAINT: Fixed several unused imports and unused assignments in... * `#11540 https://github.com/scipy/scipy/pull/11540`__: MAINT: Fixed two unused imports in scipy/misc. * `#11541 https://github.com/scipy/scipy/pull/11541`__: MAINT: Fixed several unused imports and unused assignments in... * `#11542 https://github.com/scipy/scipy/pull/11542`__: MAINT: Fixed an unused import in scipy/odr. * `#11543 https://github.com/scipy/scipy/pull/11543`__: MAINT: Fixed several unused imports and unused assignments in... * `#11544 https://github.com/scipy/scipy/pull/11544`__: MAINT: Fixed unused imports and unused assignments in scipy/integrate. * `#11545 https://github.com/scipy/scipy/pull/11545`__: MAINT: Removed unused imports and fixed unused assignments in... * `#11546 https://github.com/scipy/scipy/pull/11546`__: MAINT: Removed unused imports; fixed unused assignments in scipy/signal. * `#11547 https://github.com/scipy/scipy/pull/11547`__: MAINT: Removed unused imports; fixed unused assignments in scipy/spatial * `#11548 https://github.com/scipy/scipy/pull/11548`__: MAINT: Removed unused imports; fixed unused assignments in scipy.sparse. * `#11549 https://github.com/scipy/scipy/pull/11549`__: MAINT: Replace xrange with range * `#11560 https://github.com/scipy/scipy/pull/11560`__: MAINT: stats: remove an _argcheck call * `#11573 https://github.com/scipy/scipy/pull/11573`__: MAINT: Removed unused imports; fixed unused assignments in scipy/stats. * `#11574 https://github.com/scipy/scipy/pull/11574`__: MAINT: Small change to \`optimize.nnls\` error messages. * `#11575 https://github.com/scipy/scipy/pull/11575`__: MAINT: Update sytrd/hetrd tests * `#11582 https://github.com/scipy/scipy/pull/11582`__: MAINT: fix typo in quadpack.py closes #11448 * `#11585 https://github.com/scipy/scipy/pull/11585`__: TST: add openblas_support.py * `#11587 https://github.com/scipy/scipy/pull/11587`__: BUG: Differential evolution with LinearConstraint with sparse... * `#11588 https://github.com/scipy/scipy/pull/11588`__: MAINT: Fully display problem size in lsmr/lsqr. * `#11589 https://github.com/scipy/scipy/pull/11589`__: MAINT: Remove Python 2 workarounds * `#11590 https://github.com/scipy/scipy/pull/11590`__: MAINT: Remove Python2 module init * `#11605 https://github.com/scipy/scipy/pull/11605`__: Standardization of bounds in _linprog_util.py * `#11608 https://github.com/scipy/scipy/pull/11608`__: BUG: fix use of is in DE callback * `#11614 https://github.com/scipy/scipy/pull/11614`__: TST, MAINT: TestCtypesQuad skip with pytest * `#11619 https://github.com/scipy/scipy/pull/11619`__: ENH: add nan_policy argument and functionality to stats.mstats.winsorize * `#11621 https://github.com/scipy/scipy/pull/11621`__: MAINT: Cleanup uses of PY_VERSION_HEX, NPY_PY3K in ndimage * `#11622 https://github.com/scipy/scipy/pull/11622`__: MAINT: Cleanup uses of PY_VERSION_HEX, NPY_PY3K in sparse * `#11623 https://github.com/scipy/scipy/pull/11623`__: MAINT: Remove unnecessary 'from __future__ import ...' statements * `#11626 https://github.com/scipy/scipy/pull/11626`__: MAINT: Cleanup uses of PY_VERSION_HEX * `#11627 https://github.com/scipy/scipy/pull/11627`__: ENH: add analytic formula for normal moments * `#11628 https://github.com/scipy/scipy/pull/11628`__: MAINT, TST: adjust azure for matplotlib release * `#11631 https://github.com/scipy/scipy/pull/11631`__: Revert to old behaviour for constant cost matrices in \`linear_sum_assignment\` * `#11632 https://github.com/scipy/scipy/pull/11632`__: MAINT: Define ARRAY_ANYORDER with DEF instead of cdef * `#11639 https://github.com/scipy/scipy/pull/11639`__: BUG: interpolate/interp1d: fail gracefully on all-nan inputs * `#11640 https://github.com/scipy/scipy/pull/11640`__: MAINT: Fix BLAS3 trmm wrapper for "side" arg * `#11642 https://github.com/scipy/scipy/pull/11642`__: TST, MAINT: remove dead code in Travis CI * `#11643 https://github.com/scipy/scipy/pull/11643`__: MAINT: fix conversion in binom_test * `#11645 https://github.com/scipy/scipy/pull/11645`__: MAINT: Assorted clean up. * `#11646 https://github.com/scipy/scipy/pull/11646`__: MAINT: Remove unnecessary 'from __future__ import ...' statements * `#11647 https://github.com/scipy/scipy/pull/11647`__: DOC: document return_all arguments * `#11648 https://github.com/scipy/scipy/pull/11648`__: Perform geometric slerp in quaternion space * `#11651 https://github.com/scipy/scipy/pull/11651`__: DOC: Update paper URL in lambertw documentation * `#11653 https://github.com/scipy/scipy/pull/11653`__: PERF: Switch to C++ STL std::nth_element * `#11655 https://github.com/scipy/scipy/pull/11655`__: MAINT: Remove Python2 cStringStream * `#11657 https://github.com/scipy/scipy/pull/11657`__: ENH: Add wrapper for ?pttrf/?pttrs * `#11664 https://github.com/scipy/scipy/pull/11664`__: ENH: Add wrapper for ?gejsv * `#11665 https://github.com/scipy/scipy/pull/11665`__: ENH: Add wrapper for ?pteqr * `#11667 https://github.com/scipy/scipy/pull/11667`__: BUG: Non-central Fisher distribution (fix nan-values when nc=0) * `#11668 https://github.com/scipy/scipy/pull/11668`__: ENH: Add wrapper for ?gtsvx * `#11671 https://github.com/scipy/scipy/pull/11671`__: TST, CI: restore Azure temporarily * `#11672 https://github.com/scipy/scipy/pull/11672`__: Add warning to medfilt when array size < kernel_size * `#11674 https://github.com/scipy/scipy/pull/11674`__: TST: bump test precision for two np.dot related linalg tests. * `#11675 https://github.com/scipy/scipy/pull/11675`__: MAINT: pycodestyle clean-up * `#11677 https://github.com/scipy/scipy/pull/11677`__: ENH: Add wrapper for ?ptsvx * `#11679 https://github.com/scipy/scipy/pull/11679`__: BENCH: cKDTree benchmarks added: balanced/unbalanced tree (related... * `#11680 https://github.com/scipy/scipy/pull/11680`__: MAINT: rng_integers allows RandomState.randint or Generator.integers * `#11683 https://github.com/scipy/scipy/pull/11683`__: BUG: fix mode='mirror' on length 1 axes * `#11684 https://github.com/scipy/scipy/pull/11684`__: BUG: fix scipy.special.voigt_profile * `#11687 https://github.com/scipy/scipy/pull/11687`__: MAINT: sparse.linalg: avoid importing from \`np.core\` * `#11688 https://github.com/scipy/scipy/pull/11688`__: ENH: mypy: get specific about ignoring missing imports * `#11690 https://github.com/scipy/scipy/pull/11690`__: MAINT: mypy: fix errors about incompatible types in lists * `#11692 https://github.com/scipy/scipy/pull/11692`__: MAINT: mypy: fix remaining type errors * `#11694 https://github.com/scipy/scipy/pull/11694`__: TST, MAINT: bump to OpenBLAS 0.3.9 stable, raise tol for Win... * `#11697 https://github.com/scipy/scipy/pull/11697`__: DOC: fix pdf of norminvgauss in scipy.stats * `#11701 https://github.com/scipy/scipy/pull/11701`__: MAINT: special: add rudimentary types for \`_ufuncs\` extension... * `#11702 https://github.com/scipy/scipy/pull/11702`__: BUG: Fixed a post-merge bug for eigh() * `#11703 https://github.com/scipy/scipy/pull/11703`__: Improves docstring with consistent L2-norm * `#11705 https://github.com/scipy/scipy/pull/11705`__: DOC: Slerp the SphericalVoronoi docstring * `#11706 https://github.com/scipy/scipy/pull/11706`__: ENH: mypy: add \`--mypy\` option to \`runtests.py\` * `#11710 https://github.com/scipy/scipy/pull/11710`__: ENH: Modified stats.kstest() to use the exact stats.kstwo.sf()... * `#11715 https://github.com/scipy/scipy/pull/11715`__: DOC: add .. versionadded:: to as_matrix/from_matrix in spatial/transf… * `#11716 https://github.com/scipy/scipy/pull/11716`__: BENCH: fix benchmark imports for \`\`optimize_linprog.py\`\` * `#11721 https://github.com/scipy/scipy/pull/11721`__: MAINT: io: Remove now-unnecessary \`# type: ignore\` * `#11722 https://github.com/scipy/scipy/pull/11722`__: MAINT: mypy: remove mpmath from the ratchet * `#11726 https://github.com/scipy/scipy/pull/11726`__: Handle constant input for scipy.stats.f_oneway * `#11729 https://github.com/scipy/scipy/pull/11729`__: BENCH: optimize: added infeasible benchmarks for linprog * `#11731 https://github.com/scipy/scipy/pull/11731`__: fix inaccurate information about Mac OS compiler (#11696) * `#11733 https://github.com/scipy/scipy/pull/11733`__: Fix inaccurate docstring example of HalfspaceIntersection * `#11734 https://github.com/scipy/scipy/pull/11734`__: Doc: fix inaccurate docstring of SmoothBivariateSpline. * `#11735 https://github.com/scipy/scipy/pull/11735`__: Bug: stats: fix wrong shape from median_absolute_deviation for... * `#11736 https://github.com/scipy/scipy/pull/11736`__: ENH: add input validations and its tests for FITPACK in fitpack2.py * `#11737 https://github.com/scipy/scipy/pull/11737`__: BUG: Prevent crashes due to MKL bug in ?heevr * `#11739 https://github.com/scipy/scipy/pull/11739`__: MAINT: special: add type stubs for \`_test_round.pyx\` * `#11740 https://github.com/scipy/scipy/pull/11740`__: MAINT: special: remove unused specfun f2py wrappers * `#11741 https://github.com/scipy/scipy/pull/11741`__: BUG: fix small tolerances handling for minpack and add a test. * `#11743 https://github.com/scipy/scipy/pull/11743`__: Doc: fix docstring of rfft, rfft2, rfftn, irfft, irfft2, irfftn... * `#11744 https://github.com/scipy/scipy/pull/11744`__: MAINT: Remove unused py3k.h code * `#11745 https://github.com/scipy/scipy/pull/11745`__: DOC: stats: Clean up ncf documentation. * `#11748 https://github.com/scipy/scipy/pull/11748`__: MAINT: special: type \`cython_special\` as \`Any\` * `#11750 https://github.com/scipy/scipy/pull/11750`__: MAINT: type hints for \`_spherical_voronoi\` * `#11752 https://github.com/scipy/scipy/pull/11752`__: DOC: fix docstring of scipy.optimize.least_squares * `#11753 https://github.com/scipy/scipy/pull/11753`__: ENH: add input validation for dendrogram and a test. * `#11755 https://github.com/scipy/scipy/pull/11755`__: MAINT: Replace uses of tostring with tobytes * `#11757 https://github.com/scipy/scipy/pull/11757`__: ENH: improve binned_statistics_2d performance. * `#11759 https://github.com/scipy/scipy/pull/11759`__: ENH: optimize: add HiGHS methods to linprog * `#11760 https://github.com/scipy/scipy/pull/11760`__: MAINT: Remove FileStream replaced by GenericStream * `#11761 https://github.com/scipy/scipy/pull/11761`__: MAINT: Replace npy_3kcompat.h shims * `#11765 https://github.com/scipy/scipy/pull/11765`__: TST: Speedup test_pascal which is VERY slow on Azure * `#11766 https://github.com/scipy/scipy/pull/11766`__: TST: speed up differential_evolution L8 test * `#11767 https://github.com/scipy/scipy/pull/11767`__: Change comment in continuous rv gamma fit function * `#11776 https://github.com/scipy/scipy/pull/11776`__: Add domain option for resample. * `#11784 https://github.com/scipy/scipy/pull/11784`__: BUG: Fixed calculation of nonzero elements in scipy.sparse.random * `#11786 https://github.com/scipy/scipy/pull/11786`__: ENH: stats: add axis keyword argument to scipy.stats.rankdata * `#11789 https://github.com/scipy/scipy/pull/11789`__: Doc: fix docstring of scipy.spatial.chebyshev * `#11792 https://github.com/scipy/scipy/pull/11792`__: DOC: dev: add guidelines for developing public Cython APIs * `#11794 https://github.com/scipy/scipy/pull/11794`__: MAINT: add comments explaining a problem in cython_optimize organization * `#11796 https://github.com/scipy/scipy/pull/11796`__: DOC: add a note about precision losing in csgraph.minimum_spanning_tree... * `#11797 https://github.com/scipy/scipy/pull/11797`__: ENH: Allow negative \`axis\` in \`interpolate.BSpline\`. Also... * `#11798 https://github.com/scipy/scipy/pull/11798`__: Add simplify_cells parameter to scipy.io.loadmat * `#11801 https://github.com/scipy/scipy/pull/11801`__: MAINT, DOC: minor changes of ratio-of-uniforms in scipy.stats * `#11802 https://github.com/scipy/scipy/pull/11802`__: BUG: fix scipy.odr to handle multidimensional independent and... * `#11803 https://github.com/scipy/scipy/pull/11803`__: scipy.stats.trapz: Use analytic formulas for stats and entropy. * `#11808 https://github.com/scipy/scipy/pull/11808`__: DOC: add Examples in the scipy.interpolate.interpn docstring. * `#11809 https://github.com/scipy/scipy/pull/11809`__: Duplicate entries are added together in csr_matrix constructor * `#11813 https://github.com/scipy/scipy/pull/11813`__: MAINT: bump pyflakes to version 2.1.1 * `#11814 https://github.com/scipy/scipy/pull/11814`__: BUG: scipy.sparse.csr doctest failing with incorrect output value * `#11817 https://github.com/scipy/scipy/pull/11817`__: DOC: add Examples in the scipy.optimize.leastsq docstring * `#11820 https://github.com/scipy/scipy/pull/11820`__: ENH: Raise an error on incorrect bounds format in optimize.fmin_l_bfgs_b * `#11822 https://github.com/scipy/scipy/pull/11822`__: CI: add github actions for macOS * `#11824 https://github.com/scipy/scipy/pull/11824`__: DOC: add Examples in scipy.optimize.line_search docstring (line_search_wolfe2) * `#11830 https://github.com/scipy/scipy/pull/11830`__: TST: Always use fork for multiprocessing in fft tests * `#11831 https://github.com/scipy/scipy/pull/11831`__: DOC: add Examples and Returns in scipy.misc.central_diff_weights... * `#11832 https://github.com/scipy/scipy/pull/11832`__: DOC: stats: Some small corrections to a couple docstrings. * `#11833 https://github.com/scipy/scipy/pull/11833`__: BUG: Fix compiler_name when there are paths used in flags * `#11836 https://github.com/scipy/scipy/pull/11836`__: MAINT: re-introduce multiprocessing tests on Python3.8 * `#11837 https://github.com/scipy/scipy/pull/11837`__: Doc: add Examples in scipy.optimize.fsolve docstring * `#11838 https://github.com/scipy/scipy/pull/11838`__: Doc: add Examples in scipy.sparse.linalg.minres docstring * `#11840 https://github.com/scipy/scipy/pull/11840`__: BUG: sparse.linalg: fix overflow in expm intermediate computation * `#11842 https://github.com/scipy/scipy/pull/11842`__: BLD: fix build with gfortran 10 * `#11843 https://github.com/scipy/scipy/pull/11843`__: MAINT: Simplify floats in constants.py * `#11847 https://github.com/scipy/scipy/pull/11847`__: DOC: add a tutorial of scipy.optimize.linprog * `#11849 https://github.com/scipy/scipy/pull/11849`__: ENH: speed up geninvgauss by using cython * `#11852 https://github.com/scipy/scipy/pull/11852`__: CI: remove osx from travisCI * `#11857 https://github.com/scipy/scipy/pull/11857`__: BUG: Change parameter fc of gausspulse to float. * `#11861 https://github.com/scipy/scipy/pull/11861`__: order = degree + 1 for splines * `#11863 https://github.com/scipy/scipy/pull/11863`__: Make g77 ABI wrapper work with gfortran ABI lapack * `#11866 https://github.com/scipy/scipy/pull/11866`__: MAINT: add type ignores to sympy and matplotlib imports * `#11867 https://github.com/scipy/scipy/pull/11867`__: CI: Add arm64 in travis-ci * `#11869 https://github.com/scipy/scipy/pull/11869`__: DOC: signal: Add an example to the lsim2 docstring. * `#11870 https://github.com/scipy/scipy/pull/11870`__: DOC: signal: Use impulse instead of impulse2 in the impulse example... * `#11871 https://github.com/scipy/scipy/pull/11871`__: ENH: type ufuncs in special as ufuncs instead of Any * `#11872 https://github.com/scipy/scipy/pull/11872`__: BUG: avoid recomputing in scipy.optimize.optimize.MemoizeJac * `#11873 https://github.com/scipy/scipy/pull/11873`__: DOC: signal: Fix ODE in impulse and impulse2 docstrings. * `#11874 https://github.com/scipy/scipy/pull/11874`__: DOC: add Examples of docstring for scipy.interpolate.approximate_taylor_polynomial * `#11878 https://github.com/scipy/scipy/pull/11878`__: DOC: fixed a typo under scipy/integrate/quadrature.py * `#11879 https://github.com/scipy/scipy/pull/11879`__: BUG: Fix index arrays overflow in sparse.kron * `#11880 https://github.com/scipy/scipy/pull/11880`__: DOC: stats: Add Examples for bartlett, fligner, levene. * `#11881 https://github.com/scipy/scipy/pull/11881`__: MAINT: normalise numpy-->np in optimize.py * `#11882 https://github.com/scipy/scipy/pull/11882`__: DOC: add Examples for scipy.io.readsav docstring. * `#11883 https://github.com/scipy/scipy/pull/11883`__: DOC: add Returns and Examples for scipy.ndimage.correlate() docstring * `#11885 https://github.com/scipy/scipy/pull/11885`__: BUG: stats: Handle multidimensional arrays in f_oneway, and more. * `#11889 https://github.com/scipy/scipy/pull/11889`__: DOC: signal: Unify lsim and lsim2 examples. * `#11896 https://github.com/scipy/scipy/pull/11896`__: BUG: stats: Fix handling of size 0 inputs for ttest_rel and ttest_ind. * `#11897 https://github.com/scipy/scipy/pull/11897`__: DOC: Remove misleading default values from fit method * `#11898 https://github.com/scipy/scipy/pull/11898`__: MAINT: LinearVectorFunction.J is ndarray closes #11886 * `#11902 https://github.com/scipy/scipy/pull/11902`__: BUG: linalg: test_heequb failure * `#11904 https://github.com/scipy/scipy/pull/11904`__: fix real-to-real transforms for complex inputs and overwrite_x=True * `#11906 https://github.com/scipy/scipy/pull/11906`__: DOC: stats: fix error caused by trapz docstring * `#11907 https://github.com/scipy/scipy/pull/11907`__: BUG: stats: fixed SEGFAULT from Issue #9710 * `#11912 https://github.com/scipy/scipy/pull/11912`__: ENH: Respect matplotlib color palette with hierarchy/dendrogram. * `#11914 https://github.com/scipy/scipy/pull/11914`__: DOC: refine doc for spatial.distance.squareform * `#11915 https://github.com/scipy/scipy/pull/11915`__: ENH: Ndim linear operator * `#11919 https://github.com/scipy/scipy/pull/11919`__: ENH: expose "window_size" parameter in find_peaks_cwt() * `#11920 https://github.com/scipy/scipy/pull/11920`__: DOC: explain M, diffev * `#11923 https://github.com/scipy/scipy/pull/11923`__: CI: macOS install swig closes #11922 * `#11924 https://github.com/scipy/scipy/pull/11924`__: DOC: add Examples for scipy.optimize.bracket() docstring * `#11930 https://github.com/scipy/scipy/pull/11930`__: DOC: add Examples and clean up for signal.qspline1d and signal.qspline_eval... * `#11931 https://github.com/scipy/scipy/pull/11931`__: DOC: add Examples for sparse.linalg.bicg docstring. * `#11933 https://github.com/scipy/scipy/pull/11933`__: DOC: Add original reference for Yao-Liu objective functions * `#11934 https://github.com/scipy/scipy/pull/11934`__: DOC, MAINT: mailmap update * `#11935 https://github.com/scipy/scipy/pull/11935`__: DOC: make scipy.stats.mode documentation reflect that the function... * `#11936 https://github.com/scipy/scipy/pull/11936`__: ENH: special: add type stubs for \`orthogonal.py\` * `#11937 https://github.com/scipy/scipy/pull/11937`__: DOC: Add docstring examples to fft2, ifft2, io.savemat * `#11938 https://github.com/scipy/scipy/pull/11938`__: MAINT: add helper function for deprecating Cython API functions * `#11942 https://github.com/scipy/scipy/pull/11942`__: MAINT: ignore conditional import in _lib/_util * `#11943 https://github.com/scipy/scipy/pull/11943`__: MAINT: special: add types for geterr/seterr/errstate * `#11946 https://github.com/scipy/scipy/pull/11946`__: MAINT: add py.typed marker * `#11950 https://github.com/scipy/scipy/pull/11950`__: TST:MAINT: separated and stabilized heequb tests * `#11952 https://github.com/scipy/scipy/pull/11952`__: DOC: update toolchain roadmap for py38, C99, C++11/14 * `#11957 https://github.com/scipy/scipy/pull/11957`__: MAINT: Use np.errstate context manager instead of np.seterr. * `#11958 https://github.com/scipy/scipy/pull/11958`__: MAINT: interpolate: Remove some trailing spaces. * `#11960 https://github.com/scipy/scipy/pull/11960`__: MAINT: Cleanup Python2 compatibility code * `#11961 https://github.com/scipy/scipy/pull/11961`__: MAINT: Remove numpy/npy_3kcompat.h from _superluobject.c * `#11962 https://github.com/scipy/scipy/pull/11962`__: DOC: Fix type of \`codes\` in docstring of \`_vq._vq()\` * `#11964 https://github.com/scipy/scipy/pull/11964`__: MAINT: Cleanup unused IS_PYPY * `#11969 https://github.com/scipy/scipy/pull/11969`__: DOC: add Examples and fix docstring for special.airye * `#11970 https://github.com/scipy/scipy/pull/11970`__: BUG: sparse: 'diagonal' of sparse matrices fixed to match numpy's... * `#11974 https://github.com/scipy/scipy/pull/11974`__: BUG: Reshape oaconvolve output even when no axes are convolved * `#11976 https://github.com/scipy/scipy/pull/11976`__: MAINT: add logo for github actions * `#11977 https://github.com/scipy/scipy/pull/11977`__: CI: test bleeding edge Python * `#11979 https://github.com/scipy/scipy/pull/11979`__: DOC: add Examples for stats.ranksums() docstring. * `#11982 https://github.com/scipy/scipy/pull/11982`__: Fix KMeans++ initialisation slowness * `#11983 https://github.com/scipy/scipy/pull/11983`__: DOC: add Examples for stats.mstats.argstoarray() docstring. * `#11986 https://github.com/scipy/scipy/pull/11986`__: Avoid bugs in ndimage when the output and input arrays overlap... * `#11988 https://github.com/scipy/scipy/pull/11988`__: ENH: Override fit method of Laplace distribution with Maximum... * `#11993 https://github.com/scipy/scipy/pull/11993`__: TST, CI: Azure Windows path fixups * `#11995 https://github.com/scipy/scipy/pull/11995`__: MAINT, CI: remove custom mingw Azure * `#11996 https://github.com/scipy/scipy/pull/11996`__: DOC: add Examples and fix pep warning for fft.set_global_backend... * `#11997 https://github.com/scipy/scipy/pull/11997`__: MAINT, CI: Azure OpenBLAS simplify * `#11998 https://github.com/scipy/scipy/pull/11998`__: BENCH: Run against current HEAD instead of master * `#12001 https://github.com/scipy/scipy/pull/12001`__: ENH: stats: Implement _logpdf for the maxwell distribution. * `#12004 https://github.com/scipy/scipy/pull/12004`__: DOC: add examples for integrate.quad_vec() and integrate.quad_explain() * `#12005 https://github.com/scipy/scipy/pull/12005`__: MAINT: Use helper functions in ?tbtrs tests * `#12007 https://github.com/scipy/scipy/pull/12007`__: MAINT: updated LICENSES_bundled for pybind11 and six * `#12008 https://github.com/scipy/scipy/pull/12008`__: DOC: roadmap update * `#12009 https://github.com/scipy/scipy/pull/12009`__: ENH: optimize: support 64-bit BLAS in lbfgsb * `#12010 https://github.com/scipy/scipy/pull/12010`__: ENH: sparse.linalg: support 64-bit BLAS in isolve * `#12012 https://github.com/scipy/scipy/pull/12012`__: DOC: add Examples for interpolate.barycentric_interpolate(),... * `#12013 https://github.com/scipy/scipy/pull/12013`__: MAINT: remove last uses of numpy.dual * `#12014 https://github.com/scipy/scipy/pull/12014`__: CI: print 10 slowest tests * `#12020 https://github.com/scipy/scipy/pull/12020`__: MAINT: Removed handling of circular input in SphericalVoronoi * `#12022 https://github.com/scipy/scipy/pull/12022`__: DOC : added default value of absolute_sigma to False in scipy.optimize.curve_fit docs * `#12024 https://github.com/scipy/scipy/pull/12024`__: DOC: add Examples for io.hb_read() and io.hb_write() * `#12025 https://github.com/scipy/scipy/pull/12025`__: MAINT: Remove numpy/npy_3kcompat.h from nd_image * `#12028 https://github.com/scipy/scipy/pull/12028`__: Spelling correction * `#12030 https://github.com/scipy/scipy/pull/12030`__: ENH: optimize/_trlib: support ILP64 blas/lapack * `#12036 https://github.com/scipy/scipy/pull/12036`__: MAINT: Add some generated C files .gitignore * `#12038 https://github.com/scipy/scipy/pull/12038`__: MAINT, CI: Travis rackcdn->conda.org * `#12039 https://github.com/scipy/scipy/pull/12039`__: MAINT: signal: Lower the resolution of the plots in the chirp... * `#12040 https://github.com/scipy/scipy/pull/12040`__: DOC: add Examples for ndimage.spline_filter1d() and spline_filter()... * `#12044 https://github.com/scipy/scipy/pull/12044`__: MAINT: combine apt-get update and apt-get install into one RUN * `#12045 https://github.com/scipy/scipy/pull/12045`__: TST: Reduce size of test_diagonal_types to speed up tests * `#12046 https://github.com/scipy/scipy/pull/12046`__: MAINT: Remove unused npy_3kcompat.h * `#12047 https://github.com/scipy/scipy/pull/12047`__: MAINT: Cython 3.0 compat * `#12050 https://github.com/scipy/scipy/pull/12050`__: DOC: add download number badges of PyPI and conda-forge in README.rst * `#12052 https://github.com/scipy/scipy/pull/12052`__: DOC: add Examples odr.models.polynomial() and fix odr.odr docstring... * `#12056 https://github.com/scipy/scipy/pull/12056`__: ENH: Modifies shapiro to return a named tuple * `#12057 https://github.com/scipy/scipy/pull/12057`__: Adding my name into THANKS.txt * `#12060 https://github.com/scipy/scipy/pull/12060`__: TST: Reduce number of test_diagonal_types configs * `#12062 https://github.com/scipy/scipy/pull/12062`__: TST: Change dec.slow to pytest.mark.slow * `#12068 https://github.com/scipy/scipy/pull/12068`__: ENH: Modifies jarque_bera to return a named tuple * `#12070 https://github.com/scipy/scipy/pull/12070`__: MAINT, CI: appveyor rack->conda.org * `#12072 https://github.com/scipy/scipy/pull/12072`__: TST: filter out factorial(float) deprecation warning * `#12078 https://github.com/scipy/scipy/pull/12078`__: TST: Skip test on colab with large memory alloc * `#12079 https://github.com/scipy/scipy/pull/12079`__: DOC: Remove Python2 reference from stats tutorial * `#12081 https://github.com/scipy/scipy/pull/12081`__: DOC: add Examples docstring for optimize.show_options() * `#12084 https://github.com/scipy/scipy/pull/12084`__: BUG: interpolate: fix BarycentricInterpolator with integer input... * `#12089 https://github.com/scipy/scipy/pull/12089`__: ENH: spatial/qhull: support ILP64 Lapack * `#12090 https://github.com/scipy/scipy/pull/12090`__: ENH: integrate: support ILP64 BLAS in odeint/vode/lsoda * `#12091 https://github.com/scipy/scipy/pull/12091`__: ENH: integrate: support ILP64 in quadpack * `#12092 https://github.com/scipy/scipy/pull/12092`__: BUG: Fix dropping dt in signal.StateSpace * `#12093 https://github.com/scipy/scipy/pull/12093`__: MAINT: Rollback python2.6 workaround * `#12094 https://github.com/scipy/scipy/pull/12094`__: MAINT: \`openblas_support\` hash checks * `#12095 https://github.com/scipy/scipy/pull/12095`__: MAINT: ndimage: change \`shares_memory\` to \`may_share_memory\` * `#12098 https://github.com/scipy/scipy/pull/12098`__: Doc: change 4 model instances of odr to be instances of \`Model\`... * `#12101 https://github.com/scipy/scipy/pull/12101`__: Removed more unused imports and assignments. * `#12107 https://github.com/scipy/scipy/pull/12107`__: ENH: Area calculation for 2D inputs in SphericalVoronoi * `#12108 https://github.com/scipy/scipy/pull/12108`__: MAINT: ensure attributes have correct data type in \`SphericalVoronoi\` * `#12109 https://github.com/scipy/scipy/pull/12109`__: degree is not order in splines * `#12110 https://github.com/scipy/scipy/pull/12110`__: ENH: More helpful/forgiving io.wavfile errors * `#12117 https://github.com/scipy/scipy/pull/12117`__: BUG: fix newline * `#12123 https://github.com/scipy/scipy/pull/12123`__: [MAINT] Fix error on PyData/Sparse import. * `#12124 https://github.com/scipy/scipy/pull/12124`__: TST: Always test matmul now that Python3.5+ is required * `#12126 https://github.com/scipy/scipy/pull/12126`__: TST: Cleanup unused matplotlib code. * `#12127 https://github.com/scipy/scipy/pull/12127`__: DOC: update docstrings of signal.cspline2d, qspline2d, sepfir2d * `#12130 https://github.com/scipy/scipy/pull/12130`__: MAINT: Fixing broken links with linkchecker * `#12135 https://github.com/scipy/scipy/pull/12135`__: ENH: linalg: Add the function convolution_matrix. * `#12136 https://github.com/scipy/scipy/pull/12136`__: MAINT: Cleanup np.poly1d hack * `#12137 https://github.com/scipy/scipy/pull/12137`__: TST, CI: reproduce wheels 32-bit setup * `#12140 https://github.com/scipy/scipy/pull/12140`__: TST: stats: add kstwo, ksone to slow tests. * `#12141 https://github.com/scipy/scipy/pull/12141`__: Support 64-bit integer size in Fitpack * `#12151 https://github.com/scipy/scipy/pull/12151`__: DOC: Correct Rosenbrock function sum * `#12159 https://github.com/scipy/scipy/pull/12159`__: BUG: Fix length calculation in upfirdn * `#12160 https://github.com/scipy/scipy/pull/12160`__: BUG: Fix M_PI * `#12168 https://github.com/scipy/scipy/pull/12168`__: DOC: add an obsolete version checking javascript to doc release... * `#12171 https://github.com/scipy/scipy/pull/12171`__: CI, MAINT: Azure OpenBLAS drive flip * `#12172 https://github.com/scipy/scipy/pull/12172`__: ENH: Bounds for the Powell minimization method * `#12175 https://github.com/scipy/scipy/pull/12175`__: BLD: support more Fortran compilers for ilp64 and macro expansion... * `#12179 https://github.com/scipy/scipy/pull/12179`__: BUG: stats: A few distributions didn't accept lists as arguments. * `#12180 https://github.com/scipy/scipy/pull/12180`__: MAINT: removed redundant import in SphericalVoronoi tests * `#12181 https://github.com/scipy/scipy/pull/12181`__: DOC: for versionwarning don't use $.getScript * `#12182 https://github.com/scipy/scipy/pull/12182`__: MAINT: random sampling on the hypersphere in SphericalVoronoi... * `#12194 https://github.com/scipy/scipy/pull/12194`__: MAINT: Module and example cleanups for doc build * `#12202 https://github.com/scipy/scipy/pull/12202`__: ENH: tool to DL release wheels from Anaconda * `#12210 https://github.com/scipy/scipy/pull/12210`__: Remove py.typed marker (at least for the release) * `#12217 https://github.com/scipy/scipy/pull/12217`__: BUG: stats: Fix handling of edge cases in median_abs_deviation. * `#12223 https://github.com/scipy/scipy/pull/12223`__: BUG: stats: wilcoxon returned p > 1 for certain inputs. * `#12227 https://github.com/scipy/scipy/pull/12227`__: BLD: Set macos min version when building rectangular_lsap * `#12229 https://github.com/scipy/scipy/pull/12229`__: MAINT: tools/gh_lists.py: fix http header case sensitivity issue * `#12236 https://github.com/scipy/scipy/pull/12236`__: DOC: Fix a couple grammatical mistakes in 1.5.0-notes.rst. 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