non-existing path in 'numpy/distutils': 'site.cfg'
F2PY Version 2_8512
blas_opt_info:
blas_mkl_info:
  libraries mkl,vml,guide not found in /home/jhtu/local/lib
  libraries mkl,vml,guide not found in /usr/local/lib64
  libraries mkl,vml,guide not found in /usr/local/lib
  libraries mkl,vml,guide not found in /usr/lib64
  libraries mkl,vml,guide not found in /usr/lib
  NOT AVAILABLE

atlas_blas_threads_info:
Setting PTATLAS=ATLAS
  libraries ptf77blas,ptcblas,atlas not found in /home/jhtu/local/lib
  libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib64
  libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
  FOUND:
    libraries = ['ptf77blas', 'ptcblas', 'atlas']
    library_dirs = ['/usr/lib64/ATLAS']
    language = c
    include_dirs = ['/usr/include/ATLAS']

customize GnuFCompiler
Found executable /usr/bin/g77
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler using config
compiling '_configtest.c':

/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
  ATL_buildinfo();
  return 0;
}

C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC

compile options: '-c'
gcc: _configtest.c
gcc -pthread _configtest.o -L/usr/lib64/ATLAS -lptf77blas -lptcblas -latlas -o _configtest
ATLAS version 3.7.8 built by plazonic on Mon Mar 14 22:29:23 EST 2005:
   UNAME    : Linux touareg.math.princeton.edu.private 2.6.9-5.0.3.ELsmp #1 SMP Sat Mar 12 21:36:15 EST 2005 x86_64 x86_64 x86_64 GNU/Linux
   INSTFLG  : 
   MMDEF    : /var/tmp/BUILD/ATLAS/CONFIG/ARCHS/HAMMER64SSE2/gcc/gemm
   ARCHDEF  : /var/tmp/BUILD/ATLAS/CONFIG/ARCHS/HAMMER64SSE2/gcc/misc
   F2CDEFS  : -DAdd__ -DStringSunStyle
   CACHEEDGE: 917504
   F77      : /usr/bin/g77, version GNU Fortran (GCC) 3.4.3 20041212 (Red Hat 3.4.3-9.EL4)
   F77FLAGS : -fPIC -fomit-frame-pointer -O -m64
   CC       : /usr/bin/gcc, version gcc (GCC) 3.4.3 20041212 (Red Hat 3.4.3-9.EL4)
   CC FLAGS : -fomit-frame-pointer -O -mfpmath=387 -m64
   MCC      : /usr/bin/gcc, version gcc (GCC) 3.4.3 20041212 (Red Hat 3.4.3-9.EL4)
   MCCFLAGS : -fomit-frame-pointer -O -mfpmath=387 -m64
success!
removing: _configtest.c _configtest.o _configtest
  FOUND:
    libraries = ['ptf77blas', 'ptcblas', 'atlas']
    library_dirs = ['/usr/lib64/ATLAS']
    language = c
    define_macros = [('ATLAS_INFO', '"\\"3.7.8\\""')]
    include_dirs = ['/usr/include/ATLAS']

lapack_opt_info:
lapack_mkl_info:
mkl_info:
  libraries mkl,vml,guide not found in /home/jhtu/local/lib
  libraries mkl,vml,guide not found in /usr/local/lib64
  libraries mkl,vml,guide not found in /usr/local/lib
  libraries mkl,vml,guide not found in /usr/lib64
  libraries mkl,vml,guide not found in /usr/lib
  NOT AVAILABLE

  NOT AVAILABLE

atlas_threads_info:
Setting PTATLAS=ATLAS
  libraries ptf77blas,ptcblas,atlas not found in /home/jhtu/local/lib
  libraries lapack_atlas not found in /home/jhtu/local/lib
  libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib64
  libraries lapack_atlas not found in /usr/local/lib64
  libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
  libraries lapack_atlas not found in /usr/local/lib
  libraries lapack_atlas not found in /usr/lib64/ATLAS
numpy.distutils.system_info.atlas_threads_info
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
  FOUND:
    libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']
    library_dirs = ['/usr/lib64/ATLAS']
    language = f77
    include_dirs = ['/usr/include/ATLAS']

customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler using config
compiling '_configtest.c':

/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
  ATL_buildinfo();
  return 0;
}

C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC

compile options: '-c'
gcc: _configtest.c
gcc -pthread _configtest.o -L/usr/lib64/ATLAS -llapack -lptf77blas -lptcblas -latlas -o _configtest
ATLAS version 3.7.8 built by plazonic on Mon Mar 14 22:29:23 EST 2005:
   UNAME    : Linux touareg.math.princeton.edu.private 2.6.9-5.0.3.ELsmp #1 SMP Sat Mar 12 21:36:15 EST 2005 x86_64 x86_64 x86_64 GNU/Linux
   INSTFLG  : 
   MMDEF    : /var/tmp/BUILD/ATLAS/CONFIG/ARCHS/HAMMER64SSE2/gcc/gemm
   ARCHDEF  : /var/tmp/BUILD/ATLAS/CONFIG/ARCHS/HAMMER64SSE2/gcc/misc
   F2CDEFS  : -DAdd__ -DStringSunStyle
   CACHEEDGE: 917504
   F77      : /usr/bin/g77, version GNU Fortran (GCC) 3.4.3 20041212 (Red Hat 3.4.3-9.EL4)
   F77FLAGS : -fPIC -fomit-frame-pointer -O -m64
   CC       : /usr/bin/gcc, version gcc (GCC) 3.4.3 20041212 (Red Hat 3.4.3-9.EL4)
   CC FLAGS : -fomit-frame-pointer -O -mfpmath=387 -m64
   MCC      : /usr/bin/gcc, version gcc (GCC) 3.4.3 20041212 (Red Hat 3.4.3-9.EL4)
   MCCFLAGS : -fomit-frame-pointer -O -mfpmath=387 -m64
success!
removing: _configtest.c _configtest.o _configtest
  FOUND:
    libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']
    library_dirs = ['/usr/lib64/ATLAS']
    language = f77
    define_macros = [('ATLAS_INFO', '"\\"3.7.8\\""')]
    include_dirs = ['/usr/include/ATLAS']

running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building py_modules sources
building library "npymath" sources
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler using config
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC

compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/home/jhtu/local/include/python2.7 -c'
gcc: _configtest.c
gcc -pthread _configtest.o -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC

compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/home/jhtu/local/include/python2.7 -c'
gcc: _configtest.c
_configtest.c:1: warning: conflicting types for built-in function 'exp'
gcc -pthread _configtest.o -o _configtest
_configtest.o(.text+0x5): In function `main':
/home/jhtu/src/numpy/_configtest.c:6: undefined reference to `exp'
collect2: ld returned 1 exit status
_configtest.o(.text+0x5): In function `main':
/home/jhtu/src/numpy/_configtest.c:6: undefined reference to `exp'
collect2: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC

compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/home/jhtu/local/include/python2.7 -c'
gcc: _configtest.c
_configtest.c:1: warning: conflicting types for built-in function 'exp'
gcc -pthread _configtest.o -lm -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
building extension "numpy.core._sort" sources
  adding 'build/src.linux-x86_64-2.7/numpy/core/include/numpy/config.h' to sources.
  adding 'build/src.linux-x86_64-2.7/numpy/core/include/numpy/_numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_numpy_api.py
  adding 'build/src.linux-x86_64-2.7/numpy/core/include/numpy/__multiarray_api.h' to sources.
numpy.core - nothing done with h_files = ['build/src.linux-x86_64-2.7/numpy/core/include/numpy/config.h', 'build/src.linux-x86_64-2.7/numpy/core/include/numpy/_numpyconfig.h', 'build/src.linux-x86_64-2.7/numpy/core/include/numpy/__multiarray_api.h']
building extension "numpy.core.multiarray" sources
  adding 'build/src.linux-x86_64-2.7/numpy/core/include/numpy/config.h' to sources.
  adding 'build/src.linux-x86_64-2.7/numpy/core/include/numpy/_numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_numpy_api.py
  adding 'build/src.linux-x86_64-2.7/numpy/core/include/numpy/__multiarray_api.h' to sources.
numpy.core - nothing done with h_files = ['build/src.linux-x86_64-2.7/numpy/core/include/numpy/config.h', 'build/src.linux-x86_64-2.7/numpy/core/include/numpy/_numpyconfig.h', 'build/src.linux-x86_64-2.7/numpy/core/include/numpy/__multiarray_api.h']
building extension "numpy.core.umath" sources
  adding 'build/src.linux-x86_64-2.7/numpy/core/include/numpy/config.h' to sources.
  adding 'build/src.linux-x86_64-2.7/numpy/core/include/numpy/_numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_ufunc_api.py
  adding 'build/src.linux-x86_64-2.7/numpy/core/include/numpy/__ufunc_api.h' to sources.
  adding 'build/src.linux-x86_64-2.7/numpy/core/src/umath' to include_dirs.
numpy.core - nothing done with h_files = ['build/src.linux-x86_64-2.7/numpy/core/src/umath/funcs.inc', 'build/src.linux-x86_64-2.7/numpy/core/include/numpy/config.h', 'build/src.linux-x86_64-2.7/numpy/core/include/numpy/_numpyconfig.h', 'build/src.linux-x86_64-2.7/numpy/core/include/numpy/__ufunc_api.h']
building extension "numpy.core.scalarmath" sources
  adding 'build/src.linux-x86_64-2.7/numpy/core/include/numpy/config.h' to sources.
  adding 'build/src.linux-x86_64-2.7/numpy/core/include/numpy/_numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_numpy_api.py
  adding 'build/src.linux-x86_64-2.7/numpy/core/include/numpy/__multiarray_api.h' to sources.
executing numpy/core/code_generators/generate_ufunc_api.py
  adding 'build/src.linux-x86_64-2.7/numpy/core/include/numpy/__ufunc_api.h' to sources.
numpy.core - nothing done with h_files = ['build/src.linux-x86_64-2.7/numpy/core/include/numpy/config.h', 'build/src.linux-x86_64-2.7/numpy/core/include/numpy/_numpyconfig.h', 'build/src.linux-x86_64-2.7/numpy/core/include/numpy/__multiarray_api.h', 'build/src.linux-x86_64-2.7/numpy/core/include/numpy/__ufunc_api.h']
building extension "numpy.core._dotblas" sources
  adding 'numpy/core/blasdot/_dotblas.c' to sources.
building extension "numpy.core.umath_tests" sources
building extension "numpy.core.multiarray_tests" sources
building extension "numpy.lib._compiled_base" sources
building extension "numpy.numarray._capi" sources
building extension "numpy.fft.fftpack_lite" sources
building extension "numpy.linalg.lapack_lite" sources
  adding 'numpy/linalg/lapack_litemodule.c' to sources.
  adding 'numpy/linalg/python_xerbla.c' to sources.
building extension "numpy.random.mtrand" sources
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC

compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/home/jhtu/local/include/python2.7 -c'
gcc: _configtest.c
gcc -pthread _configtest.o -o _configtest
_configtest
failure.
removing: _configtest.c _configtest.o _configtest
building data_files sources
build_src: building npy-pkg config files
running build_py
copying numpy/version.py -> build/lib.linux-x86_64-2.7/numpy
copying build/src.linux-x86_64-2.7/numpy/__config__.py -> build/lib.linux-x86_64-2.7/numpy
copying build/src.linux-x86_64-2.7/numpy/distutils/__config__.py -> build/lib.linux-x86_64-2.7/numpy/distutils
copying numpy/f2py/__svn_version__.py -> build/lib.linux-x86_64-2.7/numpy/f2py
copying numpy/core/__svn_version__.py -> build/lib.linux-x86_64-2.7/numpy/core
running build_clib
customize UnixCCompiler
customize UnixCCompiler using build_clib
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler using build_ext
building 'numpy.linalg.lapack_lite' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC

compile options: '-DATLAS_INFO="\"3.7.8\"" -I/usr/include/ATLAS -Inumpy/core/include -Ibuild/src.linux-x86_64-2.7/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/home/jhtu/local/include/python2.7 -Ibuild/src.linux-x86_64-2.7/numpy/core/src/multiarray -Ibuild/src.linux-x86_64-2.7/numpy/core/src/umath -c'
gcc: numpy/linalg/lapack_litemodule.c
gcc: numpy/linalg/python_xerbla.c
/usr/bin/g77 -g -Wall -g -Wall -shared build/temp.linux-x86_64-2.7/numpy/linalg/lapack_litemodule.o build/temp.linux-x86_64-2.7/numpy/linalg/python_xerbla.o -L/usr/lib64/ATLAS -Lbuild/temp.linux-x86_64-2.7 -llapack -lptf77blas -lptcblas -latlas -lg2c -o build/lib.linux-x86_64-2.7/numpy/linalg/lapack_lite.so
/usr/bin/ld: /usr/lib64/ATLAS/liblapack.a(dgeev.o): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC
/usr/lib64/ATLAS/liblapack.a: could not read symbols: Bad value
collect2: ld returned 1 exit status
/usr/bin/ld: /usr/lib64/ATLAS/liblapack.a(dgeev.o): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC
/usr/lib64/ATLAS/liblapack.a: could not read symbols: Bad value
collect2: ld returned 1 exit status