Matthew, you are correct. A lot of things happened with random integer
generation recently (including deprecating random_integers), but I believe
those warnings should be squashed in the up and coming version of SciPy
from what I remember.
On Mon, Apr 4, 2016 at 6:47 PM, Matthew Brett
Hi,
On Sun, Apr 3, 2016 at 2:11 AM, Matthew Brett
wrote: On Fri, Mar 25, 2016 at 6:39 AM, Peter Cock
wrote: On Fri, Mar 25, 2016 at 3:02 AM, Robert T. McGibbon < rmcgibbo@gmail.com> wrote:
I suspect that many of the maintainers of major scipy-ecosystem
aware of these (or other similar) travis wheel caches, but would guess that the pool of travis-ci python users who weren't aware of these wheel caches is much much larger. So there will still be a lot of travis-ci clock cycles saved by manylinux wheels.
-Robert
Yes exactly. Availability of NumPy Linux wheels on PyPI is definitely something I would suggest adding to the release notes. Hopefully this will help
On Mon, Apr 4, 2016 at 9:02 AM, Peter Cock
wrote: projects are trigger a general availability of wheels in the numpy-ecosystem :)
In the case of Travis CI, their VM images for Python already have a version of NumPy installed, but having the latest version of NumPy and SciPy etc available as Linux wheels would be very nice.
We're very nearly there now.
The latest versions of numpy, scipy, scikit-image, pandas, numexpr, statsmodels wheels for testing at
http://ccdd0ebb5a931e58c7c5-aae005c4999d7244ac63632f8b80e089.r77.cf2.rackcdn...
Please do test with: ...
We would love to get any feedback as to whether these work on your
machines.
Hi Matthew,
Testing on a 64bit CentOS 6 machine with Python 3.5 compiled from source under my home directory:
$ python3.5 -m pip install --upgrade pip Requirement already up-to-date: pip in ./lib/python3.5/site-packages
$ python3.5 -m pip install --trusted-host= ccdd0ebb5a931e58c7c5-aae005c4999d7244ac63632f8b80e089.r77.cf2.rackcdn.com --find-links= http://ccdd0ebb5a931e58c7c5-aae005c4999d7244ac63632f8b80e089.r77.cf2.rackcdn... numpy scipy Requirement already satisfied (use --upgrade to upgrade): numpy in ./lib/python3.5/site-packages Requirement already satisfied (use --upgrade to upgrade): scipy in ./lib/python3.5/site-packages
$ python3.5 -m pip install --trusted-host= ccdd0ebb5a931e58c7c5-aae005c4999d7244ac63632f8b80e089.r77.cf2.rackcdn.com --find-links= http://ccdd0ebb5a931e58c7c5-aae005c4999d7244ac63632f8b80e089.r77.cf2.rackcdn... numpy scipy --upgrade Collecting numpy Downloading http://ccdd0ebb5a931e58c7c5-aae005c4999d7244ac63632f8b80e089.r77.cf2.rackcdn... (15.5MB) 100% |████████████████████████████████| 15.5MB 42.1MB/s Collecting scipy Downloading http://ccdd0ebb5a931e58c7c5-aae005c4999d7244ac63632f8b80e089.r77.cf2.rackcdn... (40.8MB) 100% |████████████████████████████████| 40.8MB 53.6MB/s Installing collected packages: numpy, scipy Found existing installation: numpy 1.10.4 Uninstalling numpy-1.10.4: Successfully uninstalled numpy-1.10.4 Found existing installation: scipy 0.16.0 Uninstalling scipy-0.16.0: Successfully uninstalled scipy-0.16.0 Successfully installed numpy-1.11.0 scipy-0.17.0
$ python3.5 -c 'import numpy; numpy.test("full")' Running unit tests for numpy NumPy version 1.11.0 NumPy relaxed strides checking option: False NumPy is installed in /home/xxx/lib/python3.5/site-packages/numpy Python version 3.5.0 (default, Sep 28 2015, 11:25:31) [GCC 4.4.7 20120313 (Red Hat 4.4.7-16)] nose version 1.3.7
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---------------------------------------------------------------------- Ran 6332 tests in 243.029s
OK (KNOWNFAIL=7, SKIP=2)
So far so good, but there are a lot of deprecation warnings etc from SciPy,
$ python3.5 -c 'import scipy; scipy.test("full")' Running unit tests for scipy NumPy version 1.11.0 NumPy relaxed strides checking option: False NumPy is installed in /home/xxx/lib/python3.5/site-packages/numpy SciPy version 0.17.0 SciPy is installed in /home/xxx/lib/python3.5/site-packages/scipy Python version 3.5.0 (default, Sep 28 2015, 11:25:31) [GCC 4.4.7 20120313 (Red Hat 4.4.7-16)] nose version 1.3.7 [snip] /home/xxx/lib/python3.5/site-packages/numpy/lib/utils.py:99: DeprecationWarning: `rand` is deprecated! numpy.testing.rand is deprecated in numpy 1.11. Use numpy.random.rand instead. warnings.warn(depdoc, DeprecationWarning) [snip]
/home/xxx/lib/python3.5/site-packages/scipy/io/arff/tests/test_arffread.py:254:
DeprecationWarning: parsing timezone aware datetimes is deprecated; this will raise an error in the future ], dtype='datetime64[m]') /home/xxx/lib/python3.5/site-packages/scipy/io/arff/arffread.py:638: PendingDeprecationWarning: generator '_loadarff.<locals>.generator' raised StopIteration [snip]
/home/xxx/lib/python3.5/site-packages/scipy/sparse/tests/test_base.py:2425:
DeprecationWarning: This function is deprecated. Please call randint(-5, 5 + 1) instead I = np.random.random_integers(-M + 1, M - 1, size=NUM_SAMPLES) [snip] 0-th dimension must be fixed to 3 but got 15 [snip] ---------------------------------------------------------------------- Ran 21407 tests in 741.602s
OK (KNOWNFAIL=130, SKIP=1775)
Hopefully I didn't miss anything important in hand editing the scipy output.
Thanks a lot for testing.
I believe the deprecation warnings are expected, because numpy 1.11.0 introduced a new deprecation warning when using `random_integers`. Scipy 0.17.0 is using `random_integers` in a few places.
Best,
Matthew _______________________________________________ NumPy-Discussion mailing list NumPy-Discussion@scipy.org https://mail.scipy.org/mailman/listinfo/numpy-discussion