Hi Robert, That did the trick, thanks! Alex On Thu, Mar 27, 2014 at 3:02 PM, Robert Kern <robert.kern@gmail.com> wrote:
On Thu, Mar 27, 2014 at 8:50 PM, David Cournapeau <cournape@gmail.com> wrote:
On Thu, Mar 27, 2014 at 8:30 PM, Alex Goodman <
wrote:
Hi all,
I have used f2py in the past on a Linux machine with virtually no
issues.
However on my Mac, I get the following error when importing an f2py generated extension:
Fatal Python error: PyThreadState_Get: no current thread Abort trap: 6
After doing some research I found out that the extension is linked to
alex.goodman@colostate.edu> the
wrong python installation: otool -L add.so add.so: ./add.so (compatibility version 0.0.0, current version 0.0.0) /System/Library/Frameworks/Python.framework/Versions/2.7/Python (compatibility version 2.7.0, current version 2.7.2) /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 169.3.0)
This seems odd because I am using the f2py executable included in Anaconda 1.9.1. I can easily fix this problem by manually using install_name_tool -change on the extension to link the correct library location, but this is really cumbersome. Is there an alternative solution, such as an additional command-line argument when invoking f2py?
This sounds like an issue specific to Anaconda, and you may get better support on the Anaconda support ML.
I think it's our bug. numpy.distutils adds an explicit `-framework Python` in the Intel Fortran link line. We should be just be using `-undefined dynamic_lookup`.
https://github.com/numpy/numpy/blob/master/numpy/distutils/fcompiler/intel.p...
Alex, can you edit that file to remove the '-Wl,-framework,Python' from that list and try building again?
-- Robert Kern _______________________________________________ NumPy-Discussion mailing list NumPy-Discussion@scipy.org http://mail.scipy.org/mailman/listinfo/numpy-discussion
-- Alex Goodman Graduate Research Assistant Department of Atmospheric Science Colorado State University