error fromnumeric: 254 (repeat) return repeat(repeats, axis)
Dear programmers, I'm not familiar with numpy therefore I need a little help to debug code which was not written by me. The lines which generate the error are the following: index = N.concatenate( (index, [len_i]) )
delta = index[1:] - index[:-1] return N.repeat( mask, delta.astype( N.int32 ) )
and this is the error message I get: PDBModel: 1619 (extendMask) return N.repeat( mask, delta.astype( N.int32 ) )
functions: 19 (repeat) return np.repeat(a, repeats, axis) fromnumeric: 254 (repeat) return repeat(repeats, axis)
below I provide you with the values of each variables in these 3 lines of code: index = [ 0 9 20 29 37 44 55 66 76 88 96 103 114
123 131 138 147 155 167 176 184 192 198 209 216 224 233 242 246 255 262 274 279 290 297 301 310 316 320 326 330 339 345 352 360 368 377 385 393 402 413 421 433 441 448 455 464 468 476 484 492 499 507 515 521 531 539 547 556 564 572 580 588 597 611 625 636 642 651 659 663 670 677 683 692 700 707 715 723 734 740 748 754 762 771 779 787 795 804 816 822 830 842 848 856 865 873 881 890 895 903 912 920 932 944 953 962 970 977 985 993 1000 1012 1021 1029 1038 1046 1057 1063 1071 1079 1085 1093 1099 1107 1114 1120 1128 1137 1145 1153 1162 1170 1179 1188 1197 1209 1218 1225 1233 1242 1250 1256 1264 1271 1278 1286 1293 1299 1308 1317 1324 1332 1340 1350 1358 1369 1376 1382 1388 1396 1403 1411 1420 1432 1440 1447 1455 1462 1466 1472 1480 1485 1491 1500 1508 1514 1518 1522 1531 1540 1549 1560 1568 1574 1582 1587 1598 1603 1611 1619 1630 1638 1645 1654 1662 1670 1678 1686 1694 1703 1708 1715 1721 1727 1735 1743 1751 1760 1766 1775 1787 1795 1802 1811 1820 1827 1835 1843 1851 1859 1868 1872 1880 1889 1897 1908 1916 1923 1931 1939 1947 1952 1962 1973 1981 1987 1994 2002 2013 2025 2030 2038 2045 2053 2064 2071 2079 2085 2093 2104 2113 2124 2130 2138 2146 2154 2162 2170 2178 2186 2194 2202 2210 2218 2226 2234 2242 2250 2258 2266 2274 2282 2290]
[len_i] = [2300]
(index, [len_i]) = (array([ 0, 9, 20, 29, 37, 44, 55, 66, 76, 88, 96, 103, 114, 123, 131, 138, 147, 155, 167, 176, 184, 192, 198, 209, 216, 224, 233, 242, 246, 255, 262, 274, 279, 290, 297, 301, 310, 316, 320, 326, 330, 339, 345, 352, 360, 368, 377, 385, 393, 402, 413, 421, 433, 441, 448, 455, 464, 468, 476, 484, 492, 499, 507, 515, 521, 531, 539, 547, 556, 564, 572, 580, 588, 597, 611, 625, 636, 642, 651, 659, 663, 670, 677, 683, 692, 700, 707, 715, 723, 734, 740, 748, 754, 762, 771, 779, 787, 795, 804, 816, 822, 830, 842, 848, 856, 865, 873, 881, 890, 895, 903, 912, 920, 932, 944, 953, 962, 970, 977, 985, 993, 1000, 1012, 1021, 1029, 1038, 1046, 1057, 1063, 1071, 1079, 1085, 1093, 1099, 1107, 1114, 1120, 1128, 1137, 1145, 1153, 1162, 1170, 1179, 1188, 1197, 1209, 1218, 1225, 1233, 1242, 1250, 1256, 1264, 1271, 1278, 1286, 1293, 1299, 1308, 1317, 1324, 1332, 1340, 1350, 1358, 1369, 1376, 1382, 1388, 1396, 1403, 1411, 1420, 1432, 1440, 1447, 1455, 1462, 1466, 1472, 1480, 1485, 1491, 1500, 1508, 1514, 1518, 1522, 1531, 1540, 1549, 1560, 1568, 1574, 1582, 1587, 1598, 1603, 1611, 1619, 1630, 1638, 1645, 1654, 1662, 1670, 1678, 1686, 1694, 1703, 1708, 1715, 1721, 1727, 1735, 1743, 1751, 1760, 1766, 1775, 1787, 1795, 1802, 1811, 1820, 1827, 1835, 1843, 1851, 1859, 1868, 1872, 1880, 1889, 1897, 1908, 1916, 1923, 1931, 1939, 1947, 1952, 1962, 1973, 1981, 1987, 1994, 2002, 2013, 2025, 2030, 2038, 2045, 2053, 2064, 2071, 2079, 2085, 2093, 2104, 2113, 2124, 2130, 2138, 2146, 2154, 2162, 2170, 2178, 2186, 2194, 2202, 2210, 2218, 2226, 2234, 2242, 2250, 2258, 2266, 2274, 2282, 2290]), [2300])
index[1:] = [ 9 20 29 37 44 55 66 76 88 96 103 114 123 131 138 147 155 167 176 184 192 198 209 216 224 233 242 246 255 262 274 279 290 297 301 310 316 320 326 330 339 345 352 360 368 377 385 393 402 413 421 433 441 448 455 464 468 476 484 492 499 507 515 521 531 539 547 556 564 572 580 588 597 611 625 636 642 651 659 663 670 677 683 692 700 707 715 723 734 740 748 754 762 771 779 787 795 804 816 822 830 842 848 856 865 873 881 890 895 903 912 920 932 944 953 962 970 977 985 993 1000 1012 1021 1029 1038 1046 1057 1063 1071 1079 1085 1093 1099 1107 1114 1120 1128 1137 1145 1153 1162 1170 1179 1188 1197 1209 1218 1225 1233 1242 1250 1256 1264 1271 1278 1286 1293 1299 1308 1317 1324 1332 1340 1350 1358 1369 1376 1382 1388 1396 1403 1411 1420 1432 1440 1447 1455 1462 1466 1472 1480 1485 1491 1500 1508 1514 1518 1522 1531 1540 1549 1560 1568 1574 1582 1587 1598 1603 1611 1619 1630 1638 1645 1654 1662 1670 1678 1686 1694 1703 1708 1715 1721 1727 1735 1743 1751 1760 1766 1775 1787 1795 1802 1811 1820 1827 1835 1843 1851 1859 1868 1872 1880 1889 1897 1908 1916 1923 1931 1939 1947 1952 1962 1973 1981 1987 1994 2002 2013 2025 2030 2038 2045 2053 2064 2071 2079 2085 2093 2104 2113 2124 2130 2138 2146 2154 2162 2170 2178 2186 2194 2202 2210 2218 2226 2234 2242 2250 2258 2266 2274 2282 2290 2300]
index[:-1] = [ 0 9 20 29 37 44 55 66 76 88 96 103 114 123 131 138 147 155 167 176 184 192 198 209 216 224 233 242 246 255 262 274 279 290 297 301 310 316 320 326 330 339 345 352 360 368 377 385 393 402 413 421 433 441 448 455 464 468 476 484 492 499 507 515 521 531 539 547 556 564 572 580 588 597 611 625 636 642 651 659 663 670 677 683 692 700 707 715 723 734 740 748 754 762 771 779 787 795 804 816 822 830 842 848 856 865 873 881 890 895 903 912 920 932 944 953 962 970 977 985 993 1000 1012 1021 1029 1038 1046 1057 1063 1071 1079 1085 1093 1099 1107 1114 1120 1128 1137 1145 1153 1162 1170 1179 1188 1197 1209 1218 1225 1233 1242 1250 1256 1264 1271 1278 1286 1293 1299 1308 1317 1324 1332 1340 1350 1358 1369 1376 1382 1388 1396 1403 1411 1420 1432 1440 1447 1455 1462 1466 1472 1480 1485 1491 1500 1508 1514 1518 1522 1531 1540 1549 1560 1568 1574 1582 1587 1598 1603 1611 1619 1630 1638 1645 1654 1662 1670 1678 1686 1694 1703 1708 1715 1721 1727 1735 1743 1751 1760 1766 1775 1787 1795 1802 1811 1820 1827 1835 1843 1851 1859 1868 1872 1880 1889 1897 1908 1916 1923 1931 1939 1947 1952 1962 1973 1981 1987 1994 2002 2013 2025 2030 2038 2045 2053 2064 2071 2079 2085 2093 2104 2113 2124 2130 2138 2146 2154 2162 2170 2178 2186 2194 2202 2210 2218 2226 2234 2242 2250 2258 2266 2274 2282 2290] mask = [ True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True False True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True False False True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True]
N.int32 = <type 'numpy.int32'>
delta.astype(N.int32) = [ 9 11 9 8 7 11 11 10 12 8 7 11 9 8 7 9 8 12 9 8 8 6 11 7 8 9 9 4 9 7 12 5 11 7 4 9 6 4 6 4 9 6 7 8 8 9 8 8 9 11 8 12 8 7 7 9 4 8 8 8 7 8 8 6 10 8 8 9 8 8 8 8 9 14 14 11 6 9 8 4 7 7 6 9 8 7 8 8 11 6 8 6 8 9 8 8 8 9 12 6 8 12 6 8 9 8 8 9 5 8 9 8 12 12 9 9 8 7 8 8 7 12 9 8 9 8 11 6 8 8 6 8 6 8 7 6 8 9 8 8 9 8 9 9 9 12 9 7 8 9 8 6 8 7 7 8 7 6 9 9 7 8 8 10 8 11 7 6 6 8 7 8 9 12 8 7 8 7 4 6 8 5 6 9 8 6 4 4 9 9 9 11 8 6 8 5 11 5 8 8 11 8 7 9 8 8 8 8 8 9 5 7 6 6 8 8 8 9 6 9 12 8 7 9 9 7 8 8 8 8 9 4 8 9 8 11 8 7 8 8 8 5 10 11 8 6 7 8 11 12 5 8 7 8 11 7 8 6 8 11 9 11 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10]
Do you have any idea what's wrong? Any advice will be greatly appreciated. Tom
Tom, 'mask' has 285 elements and 'delta' has 284 elements. If these are to be used as arguments of numpy.repeat(), they must be the same length. Warren Thomas Evangelidis wrote:
Dear programmers,
I'm not familiar with numpy therefore I need a little help to debug code which was not written by me.
The lines which generate the error are the following:
index = N.concatenate( (index, [len_i]) ) delta = index[1:] - index[:-1] return N.repeat( mask, delta.astype( N.int32 ) )
and this is the error message I get:
PDBModel: 1619 (extendMask) return N.repeat( mask, delta.astype( N.int32 ) ) functions: 19 (repeat) return np.repeat(a, repeats, axis) fromnumeric: 254 (repeat) return repeat(repeats, axis)
below I provide you with the values of each variables in these 3 lines of code:
index = [ 0 9 20 29 37 44 55 66 76 88 96 103 114 123 131 138 147 155 167 176 184 192 198 209 216 224 233 242 246 255 262 274 279 290 297 301 310 316 320 326 330 339 345 352 360 368 377 385 393 402 413 421 433 441 448 455 464 468 476 484 492 499 507 515 521 531 539 547 556 564 572 580 588 597 611 625 636 642 651 659 663 670 677 683 692 700 707 715 723 734 740 748 754 762 771 779 787 795 804 816 822 830 842 848 856 865 873 881 890 895 903 912 920 932 944 953 962 970 977 985 993 1000 1012 1021 1029 1038 1046 1057 1063 1071 1079 1085 1093 1099 1107 1114 1120 1128 1137 1145 1153 1162 1170 1179 1188 1197 1209 1218 1225 1233 1242 1250 1256 1264 1271 1278 1286 1293 1299 1308 1317 1324 1332 1340 1350 1358 1369 1376 1382 1388 1396 1403 1411 1420 1432 1440 1447 1455 1462 1466 1472 1480 1485 1491 1500 1508 1514 1518 1522 1531 1540 1549 1560 1568 1574 1582 1587 1598 1603 1611 1619 1630 1638 1645 1654 1662 1670 1678 1686 1694 1703 1708 1715 1721 1727 1735 1743 1751 1760 1766 1775 1787 1795 1802 1811 1820 1827 1835 1843 1851 1859 1868 1872 1880 1889 1897 1908 1916 1923 1931 1939 1947 1952 1962 1973 1981 1987 1994 2002 2013 2025 2030 2038 2045 2053 2064 2071 2079 2085 2093 2104 2113 2124 2130 2138 2146 2154 2162 2170 2178 2186 2194 2202 2210 2218 2226 2234 2242 2250 2258 2266 2274 2282 2290]
[len_i] = [2300]
(index, [len_i]) = (array([ 0, 9, 20, 29, 37, 44, 55, 66, 76, 88, 96, 103, 114, 123, 131, 138, 147, 155, 167, 176, 184, 192, 198, 209, 216, 224, 233, 242, 246, 255, 262, 274, 279, 290, 297, 301, 310, 316, 320, 326, 330, 339, 345, 352, 360, 368, 377, 385, 393, 402, 413, 421, 433, 441, 448, 455, 464, 468, 476, 484, 492, 499, 507, 515, 521, 531, 539, 547, 556, 564, 572, 580, 588, 597, 611, 625, 636, 642, 651, 659, 663, 670, 677, 683, 692, 700, 707, 715, 723, 734, 740, 748, 754, 762, 771, 779, 787, 795, 804, 816, 822, 830, 842, 848, 856, 865, 873, 881, 890, 895, 903, 912, 920, 932, 944, 953, 962, 970, 977, 985, 993, 1000, 1012, 1021, 1029, 1038, 1046, 1057, 1063, 1071, 1079, 1085, 1093, 1099, 1107, 1114, 1120, 1128, 1137, 1145, 1153, 1162, 1170, 1179, 1188, 1197, 1209, 1218, 1225, 1233, 1242, 1250, 1256, 1264, 1271, 1278, 1286, 1293, 1299, 1308, 1317, 1324, 1332, 1340, 1350, 1358, 1369, 1376, 1382, 1388, 1396, 1403, 1411, 1420, 1432, 1440, 1447, 1455, 1462, 1466, 1472, 1480, 1485, 1491, 1500, 1508, 1514, 1518, 1522, 1531, 1540, 1549, 1560, 1568, 1574, 1582, 1587, 1598, 1603, 1611, 1619, 1630, 1638, 1645, 1654, 1662, 1670, 1678, 1686, 1694, 1703, 1708, 1715, 1721, 1727, 1735, 1743, 1751, 1760, 1766, 1775, 1787, 1795, 1802, 1811, 1820, 1827, 1835, 1843, 1851, 1859, 1868, 1872, 1880, 1889, 1897, 1908, 1916, 1923, 1931, 1939, 1947, 1952, 1962, 1973, 1981, 1987, 1994, 2002, 2013, 2025, 2030, 2038, 2045, 2053, 2064, 2071, 2079, 2085, 2093, 2104, 2113, 2124, 2130, 2138, 2146, 2154, 2162, 2170, 2178, 2186, 2194, 2202, 2210, 2218, 2226, 2234, 2242, 2250, 2258, 2266, 2274, 2282, 2290]), [2300])
index[1:] = [ 9 20 29 37 44 55 66 76 88 96 103 114 123 131 138 147 155 167 176 184 192 198 209 216 224 233 242 246 255 262 274 279 290 297 301 310 316 320 326 330 339 345 352 360 368 377 385 393 402 413 421 433 441 448 455 464 468 476 484 492 499 507 515 521 531 539 547 556 564 572 580 588 597 611 625 636 642 651 659 663 670 677 683 692 700 707 715 723 734 740 748 754 762 771 779 787 795 804 816 822 830 842 848 856 865 873 881 890 895 903 912 920 932 944 953 962 970 977 985 993 1000 1012 1021 1029 1038 1046 1057 1063 1071 1079 1085 1093 1099 1107 1114 1120 1128 1137 1145 1153 1162 1170 1179 1188 1197 1209 1218 1225 1233 1242 1250 1256 1264 1271 1278 1286 1293 1299 1308 1317 1324 1332 1340 1350 1358 1369 1376 1382 1388 1396 1403 1411 1420 1432 1440 1447 1455 1462 1466 1472 1480 1485 1491 1500 1508 1514 1518 1522 1531 1540 1549 1560 1568 1574 1582 1587 1598 1603 1611 1619 1630 1638 1645 1654 1662 1670 1678 1686 1694 1703 1708 1715 1721 1727 1735 1743 1751 1760 1766 1775 1787 1795 1802 1811 1820 1827 1835 1843 1851 1859 1868 1872 1880 1889 1897 1908 1916 1923 1931 1939 1947 1952 1962 1973 1981 1987 1994 2002 2013 2025 2030 2038 2045 2053 2064 2071 2079 2085 2093 2104 2113 2124 2130 2138 2146 2154 2162 2170 2178 2186 2194 2202 2210 2218 2226 2234 2242 2250 2258 2266 2274 2282 2290 2300]
index[:-1] = [ 0 9 20 29 37 44 55 66 76 88 96 103 114 123 131 138 147 155 167 176 184 192 198 209 216 224 233 242 246 255 262 274 279 290 297 301 310 316 320 326 330 339 345 352 360 368 377 385 393 402 413 421 433 441 448 455 464 468 476 484 492 499 507 515 521 531 539 547 556 564 572 580 588 597 611 625 636 642 651 659 663 670 677 683 692 700 707 715 723 734 740 748 754 762 771 779 787 795 804 816 822 830 842 848 856 865 873 881 890 895 903 912 920 932 944 953 962 970 977 985 993 1000 1012 1021 1029 1038 1046 1057 1063 1071 1079 1085 1093 1099 1107 1114 1120 1128 1137 1145 1153 1162 1170 1179 1188 1197 1209 1218 1225 1233 1242 1250 1256 1264 1271 1278 1286 1293 1299 1308 1317 1324 1332 1340 1350 1358 1369 1376 1382 1388 1396 1403 1411 1420 1432 1440 1447 1455 1462 1466 1472 1480 1485 1491 1500 1508 1514 1518 1522 1531 1540 1549 1560 1568 1574 1582 1587 1598 1603 1611 1619 1630 1638 1645 1654 1662 1670 1678 1686 1694 1703 1708 1715 1721 1727 1735 1743 1751 1760 1766 1775 1787 1795 1802 1811 1820 1827 1835 1843 1851 1859 1868 1872 1880 1889 1897 1908 1916 1923 1931 1939 1947 1952 1962 1973 1981 1987 1994 2002 2013 2025 2030 2038 2045 2053 2064 2071 2079 2085 2093 2104 2113 2124 2130 2138 2146 2154 2162 2170 2178 2186 2194 2202 2210 2218 2226 2234 2242 2250 2258 2266 2274 2282 2290] mask = [ True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True False True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False False True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True False False True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True True]
N.int32 = <type 'numpy.int32'>
delta.astype(N.int32) = [ 9 11 9 8 7 11 11 10 12 8 7 11 9 8 7 9 8 12 9 8 8 6 11 7 8 9 9 4 9 7 12 5 11 7 4 9 6 4 6 4 9 6 7 8 8 9 8 8 9 11 8 12 8 7 7 9 4 8 8 8 7 8 8 6 10 8 8 9 8 8 8 8 9 14 14 11 6 9 8 4 7 7 6 9 8 7 8 8 11 6 8 6 8 9 8 8 8 9 12 6 8 12 6 8 9 8 8 9 5 8 9 8 12 12 9 9 8 7 8 8 7 12 9 8 9 8 11 6 8 8 6 8 6 8 7 6 8 9 8 8 9 8 9 9 9 12 9 7 8 9 8 6 8 7 7 8 7 6 9 9 7 8 8 10 8 11 7 6 6 8 7 8 9 12 8 7 8 7 4 6 8 5 6 9 8 6 4 4 9 9 9 11 8 6 8 5 11 5 8 8 11 8 7 9 8 8 8 8 8 9 5 7 6 6 8 8 8 9 6 9 12 8 7 9 9 7 8 8 8 8 9 4 8 9 8 11 8 7 8 8 8 5 10 11 8 6 7 8 11 12 5 8 7 8 11 7 8 6 8 11 9 11 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10]
Do you have any idea what's wrong? Any advice will be greatly appreciated.
Tom
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participants (2)
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Thomas Evangelidis -
Warren Weckesser