Hi all,
On behalf of the SciPy development team I'm pleased to announce
the release candidate SciPy 1.5.0rc2. Please help us test this pre-release.
Sources and binary wheels can be found at:
https://pypi.org/project/scipy/
and at:
https://github.com/scipy/scipy/releases/tag/v1.5.0rc2
One of a few ways to install the release candidate with pip:
pip install scipy==1.5.0rc2
==========================
SciPy 1.5.0 Release Notes
==========================
.. note:: Scipy 1.5.0 is not released yet!
.. contents::
SciPy 1.5.0 is the culmination of 6 months of hard work. It contains
many new features, numerous bug-fixes, improved test coverage and better
documentation. There have been a number of deprecations and API changes
in this release, which are documented below. All users are encouraged to
upgrade to this release, as there are a large number of bug-fixes and
optimizations. Before upgrading, we recommend that users check that
their own code does not use deprecated SciPy functionality (to do so,
run your code with ``python -Wd`` and check for ``DeprecationWarning`` s).
Our development attention will now shift to bug-fix releases on the
1.5.x branch, and on adding new features on the master branch.
This release requires Python 3.6+ and NumPy 1.14.5 or greater.
For running on PyPy, PyPy3 6.0+ and NumPy 1.15.0 are required.
Highlights of this release
- --------------------------
- - wrappers for more than a dozen new ``LAPACK`` routines are now available
in `scipy.linalg.lapack`
- - Improved support for leveraging 64-bit integer size from linear algebra
backends
- - addition of the probability distribution for two-sided one-sample
Kolmogorov-Smirnov tests
New features
============
`scipy.cluster` improvements
- ------------------------------
Initialization of `scipy.cluster.vq.kmeans2` using ``minit="++"`` had a
quadratic complexity in the number of samples. It has been improved,
resulting
in a much faster initialization with quasi-linear complexity.
`scipy.cluster.hierarchy.dendrogram` now respects the ``matplotlib`` color
palette
`scipy.fft` improvements
- ------------------------------
A new keyword-only argument ``plan`` is added to all FFT functions in this
module. It is reserved for passing in a precomputed plan from libraries
providing a FFT backend (such as ``PyFFTW`` and ``mkl-fft``), and it is
currently not used in SciPy.
`scipy.integrate` improvements
- ------------------------------
`scipy.interpolate` improvements
- --------------------------------
`scipy.io` improvements
- -----------------------
`scipy.io.wavfile` error messages are more explicit about what's wrong, and
extraneous bytes at the ends of files are ignored instead of raising an
error
when the data has successfully been read.
`scipy.io.loadmat` gained a ``simplify_cells`` parameter, which if set to
``True`` simplifies the structure of the return value if the ``.mat`` file
contains cell arrays.
``pathlib.Path`` objects are now supported in `scipy.io` Matrix Market I/O
functions
`scipy.linalg` improvements
- ---------------------------
`scipy.linalg.eigh` has been improved. Now various ``LAPACK`` drivers can
be
selected at will and also subsets of eigenvalues can be requested via
``subset_by_value`` keyword. Another keyword ``subset_by_index`` is
introduced.
Keywords ``turbo`` and ``eigvals`` are deprecated.
Similarly, standard and generalized Hermitian eigenvalue ``LAPACK``
routines
``?evx`` are added and existing ones now have full ``_lwork``
counterparts.
Wrappers for the following ``LAPACK`` routines have been added to
`scipy.linalg.lapack`:
- - ``?getc2``: computes the LU factorization of a general matrix with
complete
pivoting
- - ``?gesc2``: solves a linear system given an LU factorization from
``?getc2``
- - ``?gejsv``: computes the singular value decomposition of a general
matrix
with higher accuracy calculation of tiny singular values and their
corresponding singular vectors
- - ``?geqrfp``: computes the QR factorization of a general matrix with
non-negative elements on the diagonal of R
- - ``?gtsvx``: solves a linear system with general tridiagonal matrix
- - ``?gttrf``: computes the LU factorization of a tridiagonal matrix
- - ``?gttrs``: solves a linear system given an LU factorization from
``?gttrf``
- - ``?ptsvx``: solves a linear system with symmetric positive definite
tridiagonal matrix
- - ``?pttrf``: computes the LU factorization of a symmetric positive
definite
tridiagonal matrix
- - ``?pttrs``: solves a linear system given an LU factorization from
``?pttrf``
- - ``?pteqr``: computes the eigenvectors and eigenvalues of a positive
definite
tridiagonal matrix
- - ``?tbtrs``: solves a linear system with a triangular banded matrix
- - ``?csd``: computes the Cosine Sine decomposition of an
orthogonal/unitary
matrix
Generalized QR factorization routines (``?geqrf``) now have full ``_lwork``
counterparts.
`scipy.linalg.cossin` Cosine Sine decomposition of unitary matrices has
been
added.
The function `scipy.linalg.khatri_rao`, which computes the Khatri-Rao
product,
was added.
The new function `scipy.linalg.convolution_matrix` constructs the Toeplitz
matrix representing one-dimensional convolution.
`scipy.ndimage` improvements
- ----------------------------
`scipy.optimize` improvements
- -----------------------------
The finite difference numerical differentiation used in various ``minimize``
methods that use gradients has several new features:
- - 2-point, 3-point, or complex step finite differences can be used.
Previously
only a 2-step finite difference was available.
- - There is now the possibility to use a relative step size, previously
only an
absolute step size was available.
- - If the ``minimize`` method uses bounds the numerical differentiation
strictly
obeys those limits.
- - The numerical differentiation machinery now makes use of a simple
cache,
which in some cases can reduce the number of function evaluations.
- - ``minimize``'s ``method= 'powell'`` now supports simple bound
constraints
There have been several improvements to `scipy.optimize.linprog`:
- - The ``linprog`` benchmark suite has been expanded considerably.
- - ``linprog``'s dense pivot-based redundancy removal routine and sparse
presolve are faster
- - When ``scikit-sparse`` is available, solving sparse problems with
``method='interior-point'`` is faster
The caching of values when optimizing a function returning both value and
gradient together has been improved, avoiding repeated function evaluations
when using a ``HessianApproximation`` such as ``BFGS``.
``differential_evolution`` can now use the modern ``np.random.Generator``
as
well as the legacy ``np.random.RandomState`` as a seed.
`scipy.signal` improvements
- ---------------------------
A new optional argument ``include_nyquist`` is added to ``freqz`` functions
in
this module. It is used for including the last frequency (Nyquist
frequency).
`scipy.signal.find_peaks_cwt` now accepts a ``window_size`` parameter for
the
size of the window used to calculate the noise floor.
`scipy.sparse` improvements
- ---------------------------
Outer indexing is now faster when using a 2d column vector to select column
indices.
`scipy.sparse.lil.tocsr` is faster
Fixed/improved comparisons between pydata sparse arrays and sparse matrices
BSR format sparse multiplication performance has been improved.
`scipy.sparse.linalg.LinearOperator` has gained the new ``ndim`` class
attribute
`scipy.spatial` improvements
- ----------------------------
`scipy.spatial.geometric_slerp` has been added to enable geometric
spherical linear interpolation on an n-sphere
`scipy.spatial.SphericalVoronoi` now supports calculation of region areas
in 2D
and 3D cases
The tree building algorithm used by ``cKDTree`` has improved from quadratic
worst case time complexity to loglinear. Benchmarks are also now available
for
building and querying of balanced/unbalanced kd-trees.
`scipy.special` improvements
- ----------------------------
The following functions now have Cython interfaces in `cython_special`:
- - `scipy.special.erfinv`
- - `scipy.special.erfcinv`
- - `scipy.special.spherical_jn`
- - `scipy.special.spherical_yn`
- - `scipy.special.spherical_in`
- - `scipy.special.spherical_kn`
`scipy.special.log_softmax` has been added to calculate the logarithm of
softmax
function. It provides better accuracy than
``log(scipy.special.softmax(x))`` for
inputs that make softmax saturate.
`scipy.stats` improvements
- --------------------------
The function for generating random samples in `scipy.stats.dlaplace` has
been
improved. The new function is approximately twice as fast with a memory
footprint reduction between 25 % and 60 % (see gh-11069).
`scipy.stats` functions that accept a seed for reproducible calculations
using
random number generation (e.g. random variates from distributions) can now
use
the modern ``np.random.Generator`` as well as the legacy
``np.random.RandomState`` as a seed.
The ``axis`` parameter was added to `scipy.stats.rankdata`. This allows
slices
of an array along the given axis to be ranked independently.
The ``axis`` parameter was added to `scipy.stats.f_oneway`, allowing it to
compute multiple one-way ANOVA tests for data stored in n-dimensional
arrays. The performance of ``f_oneway`` was also improved for some cases.
The PDF and CDF methods for ``stats.geninvgauss`` are now significantly
faster
as the numerical integration to calculate the CDF uses a Cython based
``LowLevelCallable``.
Moments of the normal distribution (`scipy.stats.norm`) are now calculated
using
analytical formulas instead of numerical integration for greater speed and
accuracy
Moments and entropy trapezoidal distribution (`scipy.stats.trapz`) are now
calculated using analytical formulas instead of numerical integration for
greater speed and accuracy
Methods of the truncated normal distribution (`scipy.stats.truncnorm`),
especially ``_rvs``, are significantly faster after a complete rewrite.
The `fit` method of the Laplace distribution, `scipy.stats.laplace`, now
uses
the analytical formulas for the maximum likelihood estimates of the
parameters.
Generation of random variates is now thread safe for all SciPy
distributions.
3rd-party distributions may need to modify the signature of the ``_rvs()``
method to conform to ``_rvs(self, ..., size=None, random_state=None)``. (A
one-time VisibleDeprecationWarning is emitted when using non-conformant
distributions.)
The Kolmogorov-Smirnov two-sided test statistic distribution
(`scipy.stats.kstwo`) was added. Calculates the distribution of the K-S
two-sided statistic ``D_n`` for a sample of size n, using a mixture of
exact
and asymptotic algorithms.
The new function ``median_abs_deviation`` replaces the deprecated
``median_absolute_deviation``.
The ``wilcoxon`` function now computes the p-value for Wilcoxon's signed
rank
test using the exact distribution for inputs up to length 25. The function
has
a new ``mode`` parameter to specify how the p-value is to be computed. The
default is ``"auto"``, which uses the exact distribution for inputs up to
length
25 and the normal approximation for larger inputs.
Added a new Cython-based implementation to evaluate guassian kernel
estimates,
which should improve the performance of ``gaussian_kde``
The ``winsorize`` function now has a ``nan_policy`` argument for refined
handling of ``nan`` input values.
The ``binned_statistic_dd`` function with ``statistic="std"`` performance
was
improved by ~4x.
``scipy.stats.kstest(rvs, cdf,...)`` now handles both one-sample and
two-sample testing. The one-sample variation uses `scipy.stats.ksone`
(or `scipy.stats.kstwo` with back off to `scipy.stats.kstwobign`) to
calculate
the p-value. The two-sample variation, invoked if ``cdf`` is array_like,
uses
an algorithm described by Hodges to compute the probability directly, only
backing off to `scipy.stats.kstwo` in case of overflow. The result in both
cases is more accurate p-values, especially for two-sample testing with
smaller (or quite different) sizes.
`scipy.stats.maxwell` performance improvements include a 20 % speed up for
`fit()`` and 5 % for ``pdf()``
`scipy.stats.shapiro` and `scipy.stats.jarque_bera` now return a named
tuple
for greater consistency with other ``stats`` functions
Deprecated features
===================
`scipy` deprecations
- --------------------
`scipy.special` changes
- -----------------------
The ``bdtr``, ``bdtrc``, and ``bdtri`` functions are deprecating
non-negative
non-integral ``n`` arguments.
`scipy.stats` changes
- ---------------------
The function ``median_absolute_deviation`` is deprecated. Use
``median_abs_deviation`` instead.
The use of the string ``"raw"`` with the ``scale`` parameter of ``iqr`` is
deprecated. Use ``scale=1`` instead.
Backwards incompatible changes
==============================
`scipy.interpolate` changes
- ---------------------------
`scipy.linalg` changes
- ----------------------
The output signatures of ``?syevr``, ``?heevr`` have been changed from
``w, v, info`` to ``w, v, m, isuppz, info``
The order of output arguments ``w``, ``v`` of ``{gv, gvd, gvx}`` is
swapped.
`scipy.signal` changes
- ----------------------
The output length of `scipy.signal.upfirdn` has been corrected, resulting
outputs may now be shorter for some combinations of up/down ratios and
input
signal and filter lengths.
`scipy.signal.resample` now supports a ``domain`` keyword argument for
specification of time or frequency domain input.
`scipy.stats` changes
- ---------------------
Other changes
=============
Improved support for leveraging 64-bit integer size from linear algebra
backends
in several parts of the SciPy codebase.
Shims designed to ensure the compatibility of SciPy with Python 2.7 have
now
been removed.
Many warnings due to unused imports and unused assignments have been
addressed.
Many usage examples were added to function docstrings, and many input
validations and intuitive exception messages have been added throughout the
codebase.
Early stage adoption of type annotations in a few parts of the codebase
Authors
=======
* @endolith
* Hameer Abbasi
* ADmitri +
* Wesley Alves +
* Berkay Antmen +
* Sylwester Arabas +
* Arne Küderle +
* Christoph Baumgarten
* Peter Bell
* Felix Berkenkamp
* Jordão Bragantini +
* Clemens Brunner +
* Evgeni Burovski
* Matthias Bussonnier +
* CJ Carey
* Derrick Chambers +
* Leander Claes +
* Christian Clauss
* Luigi F. Cruz +
* dankleeman
* Andras Deak
* Milad Sadeghi DM +
* jeremie du boisberranger +
* Stefan Endres
* Malte Esders +
* Leo Fang +
* felixhekhorn +
* Isuru Fernando
* Andrew Fowlie
* Lakshay Garg +
* Gaurav Gijare +
* Ralf Gommers
* Emmanuelle Gouillart +
* Kevin Green +
* Martin Grignard +
* Maja Gwozdz
* Sturla Molden
* gyu-don +
* Matt Haberland
* hakeemo +
* Charles Harris
* Alex Henrie
* Santi Hernandez +
* William Hickman +
* Till Hoffmann +
* Joseph T. Iosue +
* Anany Shrey Jain
* Jakob Jakobson
* Charles Jekel +
* Julien Jerphanion +
* Jiacheng-Liu +
* Christoph Kecht +
* Paul Kienzle +
* Reidar Kind +
* Dmitry E. Kislov +
* Konrad +
* Konrad0
* Takuya KOUMURA +
* Krzysztof Pióro
* Peter Mahler Larsen
* Eric Larson
* Antony Lee
* Gregory Lee +
* Gregory R. Lee
* Chelsea Liu
* Cong Ma +
* Kevin Mader +
* Maja Gwóźdź +
* Alex Marvin +
* Matthias Kümmerer
* Nikolay Mayorov
* Mazay0 +
* G. D. McBain
* Nicholas McKibben +
* Sabrina J. Mielke +
* Sebastian J. Mielke +
* Miloš Komarčević +
* Shubham Mishra +
* Santiago M. Mola +
* Grzegorz Mrukwa +
* Peyton Murray
* Andrew Nelson
* Nico Schlömer
* nwjenkins +
* odidev +
* Sambit Panda
* Vikas Pandey +
* Rick Paris +
* Harshal Prakash Patankar +
* Balint Pato +
* Matti Picus
* Ilhan Polat
* poom +
* Siddhesh Poyarekar
* Vladyslav Rachek +
* Bharat Raghunathan
* Manu Rajput +
* Tyler Reddy
* Andrew Reed +
* Lucas Roberts
* Ariel Rokem
* Heshy Roskes
* Matt Ruffalo
* Atsushi Sakai +
* Benjamin Santos +
* Christoph Schock +
* Lisa Schwetlick +
* Chris Simpson +
* Leo Singer
* Kai Striega
* Søren Fuglede Jørgensen
* Kale-ab Tessera +
* Seth Troisi +
* Robert Uhl +
* Paul van Mulbregt
* Vasiliy +
* Isaac Virshup +
* Pauli Virtanen
* Shakthi Visagan +
* Jan Vleeshouwers +
* Sam Wallan +
* Lijun Wang +
* Warren Weckesser
* Richard Weiss +
* wenhui-prudencemed +
* Eric Wieser
* Josh Wilson
* James Wright +
* Ruslan Yevdokymov +
* Ziyao Zhang +
A total of 129 people contributed to this release.
People with a "+" by their names contributed a patch for the first time.
This list of names is automatically generated, and may not be fully
complete.
Issues closed for 1.5.0
- -----------------------
* `#1455 https://github.com/scipy/scipy/issues/1455`__: ellipord does
returns bogus values if gstop or gpass are negative...
* `#1968 https://github.com/scipy/scipy/issues/1968`__: correlate2d's
output does not agree with correlate's output in...
* `#2744 https://github.com/scipy/scipy/issues/2744`__: BUG: optimize:
'\*\*kw' argument of 'newton_krylov' is not documented
* `#4755 https://github.com/scipy/scipy/issues/4755`__: TypeError: data
type "https://github.com/scipy/scipy/issues/4921`__: scipy.optimize
maxiter option not working as expected
* `#5144 https://github.com/scipy/scipy/issues/5144`__: RuntimeWarning on
csgraph.shortest_path when edge lengths are...
* `#5309 https://github.com/scipy/scipy/issues/5309`__: Documentation of
'hybr' and 'lm' inconsistent in optimize.root
* `#6026 https://github.com/scipy/scipy/issues/6026`__: Replace
approx_grad with _numdiff.approx_derivative in scipy.optimize
* `#6502 https://github.com/scipy/scipy/issues/6502`__: Computing
Eigenvalues in an Interval with LAPACK
* `#7058 https://github.com/scipy/scipy/issues/7058`__: Errors in
special.bdtri and special.bdtr for non-integer k values
* `#7700 https://github.com/scipy/scipy/issues/7700`__: SuperLU does not
respect perm_c="NATURAL"
* `#7895 https://github.com/scipy/scipy/issues/7895`__: Improvements to
io.loadmat
* `#8205 https://github.com/scipy/scipy/issues/8205`__: ValueError in
scipy.linalg.eigvalsh for large matrix
* `#8278 https://github.com/scipy/scipy/issues/8278`__: Memory limit for
scipy.sparse.linalg.spsolve with scikit-umfpack
* `#8327 https://github.com/scipy/scipy/issues/8327`__:
scipy.stats.mstats.winsorize NaN handling
* `#8341 https://github.com/scipy/scipy/issues/8341`__:
scipy.stats.ks_2samp for masked and unmasked data give different...
* `#8748 https://github.com/scipy/scipy/issues/8748`__:
scipy.stats.kstest for same distribution: p-values nonuniform
* `#9042 https://github.com/scipy/scipy/issues/9042`__: optimize:
Incorrect statement about \`jac\` in the \`minimize\`...
* `#9197 https://github.com/scipy/scipy/issues/9197`__: problem with
scipy.signal.butter with 1000+ points array
* `#9212 https://github.com/scipy/scipy/issues/9212`__: EIGH very very
slow --> suggesting an easy fix
* `#9553 https://github.com/scipy/scipy/issues/9553`__: ndimage routines
behave badly when output has memory overlap...
* `#9632 https://github.com/scipy/scipy/issues/9632`__:
ndimage.maximum_filter undocumented behaviour using footprint...
* `#9658 https://github.com/scipy/scipy/issues/9658`__:
`scipy.optimize.minimize(method='COBYLA')` not threadsafe
* `#9710 https://github.com/scipy/scipy/issues/9710`__:
stats.weightedtau([1], [1.0]) SEGFAULTs
* `#9797 https://github.com/scipy/scipy/issues/9797`__: Master Tracker
for some Kolmogorov-Smirnov test Issues
* `#9844 https://github.com/scipy/scipy/issues/9844`__:
scipy.signal.upfirdn gives different length matrix versus MATLAB...
* `#9872 https://github.com/scipy/scipy/issues/9872`__:
scipy.signal.convolve is slower when vectorized
* `#9913 https://github.com/scipy/scipy/issues/9913`__: BUG: No dt in
StateSpace operations
* `#10014 https://github.com/scipy/scipy/issues/10014`__: Distribution
names \`weibull_min\`and \`weibull_max\` should...
* `#10159 https://github.com/scipy/scipy/issues/10159`__: BUG: stats:
chisquare returns incorrect results for arrays of...
* `#10302 https://github.com/scipy/scipy/issues/10302`__: scipy.fft: Add
a \`plan\` argument
* `#10332 https://github.com/scipy/scipy/issues/10332`__: 'Incomplete wav
chunk' inconsistent/reason unknown
* `#10441 https://github.com/scipy/scipy/issues/10441`__: Remove uses of
\`numpy.dual\`?
* `#10558 https://github.com/scipy/scipy/issues/10558`__: Document
implicit sum in csr_matrix() constructor
* `#10788 https://github.com/scipy/scipy/issues/10788`__: LU with full
pivoting
* `#10841 https://github.com/scipy/scipy/issues/10841`__: Unexpected
behavior in linalg.blas.dtrmm wrapper
* `#10919 https://github.com/scipy/scipy/issues/10919`__:
optimize._lbfgsb setulb() function violates parameter bounds
* `#10963 https://github.com/scipy/scipy/issues/10963`__: kstest,
ks_2samp: confusing \`mode\` argument descriptions
* `#11022 https://github.com/scipy/scipy/issues/11022`__: Unexpected
Result in factorial function with NaN input
* `#11028 https://github.com/scipy/scipy/issues/11028`__: Documentation
error in optimize.minimize
* `#11058 https://github.com/scipy/scipy/issues/11058`__: Adding
logsoftmax function
* `#11076 https://github.com/scipy/scipy/issues/11076`__: ValueError:
Unknown wave file format
* `#11090 https://github.com/scipy/scipy/issues/11090`__: Misconception
of the median absolute deviation in stats?
* `#11095 https://github.com/scipy/scipy/issues/11095`__: BUG:
find_peaks_cwt test failures in 32-bit Linux wheels
* `#11107 https://github.com/scipy/scipy/issues/11107`__: scipy.io.mmread
generated an error "TypeError: startswith first...
* `#11123 https://github.com/scipy/scipy/issues/11123`__: Add wrapper for
?gttrf/?gttrs
* `#11128 https://github.com/scipy/scipy/issues/11128`__: OverflowError
in resample_poly (upfirdn)
* `#11132 https://github.com/scipy/scipy/issues/11132`__: Possible bug:
rv_discret.ppf for percentiles 0 and 100 and loc...
* `#11163 https://github.com/scipy/scipy/issues/11163`__: Comparisons
between scipy spmatrix and can sparse.SparseArray...
* `#11168 https://github.com/scipy/scipy/issues/11168`__: Generalized
Pareto variance inaccurate for concentrations near...
* `#11169 https://github.com/scipy/scipy/issues/11169`__: Add wrapper for
?geqrfp
* `#11184 https://github.com/scipy/scipy/issues/11184`__: 2-sided
Kolmogorov Smirnov returns p-value of 1
* `#11185 https://github.com/scipy/scipy/issues/11185`__: The .roots() or
solve() function of scipy.interpolate.CubicHermiteSpline...
* `#11190 https://github.com/scipy/scipy/issues/11190`__: Add wrapper for
?tbtrs
* `#11200 https://github.com/scipy/scipy/issues/11200`__: Can no longer
slice csr_matrix in 1.3.0
* `#11207 https://github.com/scipy/scipy/issues/11207`__:
_minimize_scalar_bounded: reference before assignment
* `#11216 https://github.com/scipy/scipy/issues/11216`__: linprog:
interior-point: Cholmod reordering can be reused
* `#11223 https://github.com/scipy/scipy/issues/11223`__: Add wrappers
for ?pttrf, ?pttrs
* `#11224 https://github.com/scipy/scipy/issues/11224`__: Add wrapperfor
?pteqr
* `#11235 https://github.com/scipy/scipy/issues/11235`__: MAINT:
Missleading Error Message for IIR Filter
* `#11244 https://github.com/scipy/scipy/issues/11244`__: Missing
reference in \`scipy.optimize.line_search\`
* `#11262 https://github.com/scipy/scipy/issues/11262`__: Hermitian
Eigenvalue Problem eigh() API and wrapper change proposal
* `#11266 https://github.com/scipy/scipy/issues/11266`__: Sparse matrix
constructor data type detection changes on Numpy...
* `#11270 https://github.com/scipy/scipy/issues/11270`__: CI failing:
Travis CI Py36 refguide and Linux_Python_36_32bit_full...
* `#11279 https://github.com/scipy/scipy/issues/11279`__: linalg.eigh
checks whole array for finite values
* `#11295 https://github.com/scipy/scipy/issues/11295`__: CI: azure does
not auto-cancel old jobs on pushes
* `#11299 https://github.com/scipy/scipy/issues/11299`__:
stats.truncnorm.rvs 100x slower in v1.4.x than v1.3.3
* `#11315 https://github.com/scipy/scipy/issues/11315`__: BUG: special:
rgamma on negative integers smaller -34
* `#11319 https://github.com/scipy/scipy/issues/11319`__: Missing
\`int64_t\` declaration in rectangular_lsap.cpp
* `#11323 https://github.com/scipy/scipy/issues/11323`__: Compilation
failure due to missing symbol pthread_atfork
* `#11332 https://github.com/scipy/scipy/issues/11332`__: BUG:
directed_hausdorff distance on sets u and v when u is a...
* `#11350 https://github.com/scipy/scipy/issues/11350`__: Khatri-Rao
product
* `#11354 https://github.com/scipy/scipy/issues/11354`__: ENH: Add
wrapper for ?gejsv
* `#11361 https://github.com/scipy/scipy/issues/11361`__: Dropped NaN in
eval_genlaguerre function
* `#11363 https://github.com/scipy/scipy/issues/11363`__: Dropped NaN in
hyperu function
* `#11365 https://github.com/scipy/scipy/issues/11365`__:
scipy.stats.binned_statistic regressed in v1.4.0
* `#11369 https://github.com/scipy/scipy/issues/11369`__: Dropped NaN in
eval_hermite
* `#11370 https://github.com/scipy/scipy/issues/11370`__: Dropped NaN in
eval_gegenbauer
* `#11373 https://github.com/scipy/scipy/issues/11373`__: Add wrapper for
?gtsvx
* `#11374 https://github.com/scipy/scipy/issues/11374`__: Add wrapper for
?ptsvx
* `#11391 https://github.com/scipy/scipy/issues/11391`__:
csgraph.minimum_spanning_tree loses precision
* `#11398 https://github.com/scipy/scipy/issues/11398`__: Update stats to
cope with \`np.random.Generator\` machinery
* `#11412 https://github.com/scipy/scipy/issues/11412`__: Array copying
causes unwanted type casting from complex to float...
* `#11415 https://github.com/scipy/scipy/issues/11415`__: Where is the
Wiener Filter derived from?
* `#11416 https://github.com/scipy/scipy/issues/11416`__:
_lib._util.getargspec_no_self is missing KEYWORD_ONLY support
* `#11428 https://github.com/scipy/scipy/issues/11428`__: Documentation
on SHGO inequality constraints appears contradictory
* `#11429 https://github.com/scipy/scipy/issues/11429`__: Add LAPACK's
ZUNCSD cosine sine decomposition
* `#11438 https://github.com/scipy/scipy/issues/11438`__:
run_dualannealing passes bounds incorrectly in benchmarks/optimize.py
* `#11441 https://github.com/scipy/scipy/issues/11441`__: Can't run
optimize benchmarks
* `#11442 https://github.com/scipy/scipy/issues/11442`__: Chebyshev
weights
* `#11448 https://github.com/scipy/scipy/issues/11448`__: Wrongly typed
comparison in integrate.quad
* `#11458 https://github.com/scipy/scipy/issues/11458`__: BUG:
maximum_bipartite_matching produces infeasible solution
* `#11460 https://github.com/scipy/scipy/issues/11460`__: CI failing: 2
Travis CI tests fail with numpy build or version...
* `#11462 https://github.com/scipy/scipy/issues/11462`__: Bug on "++"
initialization on "kmeans2"
* `#11464 https://github.com/scipy/scipy/issues/11464`__: Shouldn't data
type of KDE evaluation should be like in the input...
* `#11468 https://github.com/scipy/scipy/issues/11468`__: performance of
binned_statistics_2d 100x slowdown from 1.3.2...
* `#11484 https://github.com/scipy/scipy/issues/11484`__: Callback
function doesn't give the same value as the one being...
* `#11492 https://github.com/scipy/scipy/issues/11492`__: Confusing
dendrogram labelling
* `#11493 https://github.com/scipy/scipy/issues/11493`__:
scipy.optimize.least_squares fails if the return array of the...
* `#11494 https://github.com/scipy/scipy/issues/11494`__: Error
performing kronecker product between large sparse vectors
* `#11503 https://github.com/scipy/scipy/issues/11503`__: medfilt
produces 0 on input of length 1
* `#11529 https://github.com/scipy/scipy/issues/11529`__: Pyflakes
generates almost 700 warnings.
* `#11566 https://github.com/scipy/scipy/issues/11566`__:
irfft/irfft2/irfftn docs are slightly confusing re: input type.
* `#11572 https://github.com/scipy/scipy/issues/11572`__: least_squares:
too small tolerances not catched with method='lm'
* `#11581 https://github.com/scipy/scipy/issues/11581`__: DOC:
scipy.interpolate.RectSphereBivariateSpline
* `#11586 https://github.com/scipy/scipy/issues/11586`__: Differential
evolution breaks with LinearConstraints with sparse...
* `#11595 https://github.com/scipy/scipy/issues/11595`__:
scipy.spatial.cKDTree construction slow for some datasets
* `#11598 https://github.com/scipy/scipy/issues/11598`__: output of
special.voigt_profile when sigma=0
* `#11601 https://github.com/scipy/scipy/issues/11601`__: linalg tests
failing in runtests.py
* `#11602 https://github.com/scipy/scipy/issues/11602`__:
scipy.optimize.linear_sum_assignment returns reverse diagonal...
* `#11610 https://github.com/scipy/scipy/issues/11610`__: Analytic
formula for normal moments
* `#11611 https://github.com/scipy/scipy/issues/11611`__: Build failure
with gfortran 10
* `#11613 https://github.com/scipy/scipy/issues/11613`__: TST, MAINT:
test_quadpack TestCtypesQuad wasn't fully migrated...
* `#11630 https://github.com/scipy/scipy/issues/11630`__:
SmoothBivariateSpline bbox parameter
* `#11635 https://github.com/scipy/scipy/issues/11635`__: typo in
docstring of scipy.stats.norminvgauss
* `#11637 https://github.com/scipy/scipy/issues/11637`__: BUG: core dumps
when calling scipy.interpolate.interp1d with...
* `#11638 https://github.com/scipy/scipy/issues/11638`__: better
documentation for 'return_all' option in minimize(Nelder...
* `#11652 https://github.com/scipy/scipy/issues/11652`__: TST, MAINT: CI
failures for pre-release NumPy wheels
* `#11659 https://github.com/scipy/scipy/issues/11659`__:
optimize.fmin_l_bfgs_b needs bound check and appropiate error...
* `#11660 https://github.com/scipy/scipy/issues/11660`__: BUG/ENH:
distribution.ncf with nc=0 returns nan
* `#11661 https://github.com/scipy/scipy/issues/11661`__:
scipy.ndimage.convolve1d and correlate1d don't behave properly...
* `#11669 https://github.com/scipy/scipy/issues/11669`__: p-value varies
with the order of the data
* `#11676 https://github.com/scipy/scipy/issues/11676`__: documentation
of scipy.spatial.HalfspaceIntersection: wrong method...
* `#11685 https://github.com/scipy/scipy/issues/11685`__: Rotation cannot
be expressed as matrix
* `#11686 https://github.com/scipy/scipy/issues/11686`__: MAINT: mypy
imports of Cython "modules"
* `#11693 https://github.com/scipy/scipy/issues/11693`__:
TestDifferentialEvolutionSolver::test_L4 failing in CI
* `#11696 https://github.com/scipy/scipy/issues/11696`__: DOC: incorrect
compiler information for macOS in docs
* `#11709 https://github.com/scipy/scipy/issues/11709`__: eigh() tests
fail to pass, crash Python with seemingly ramdom...
* `#11763 https://github.com/scipy/scipy/issues/11763`__: Small error in
gamma continuous rv fit comments
* `#11769 https://github.com/scipy/scipy/issues/11769`__: truncnorm.rvs
Weird Behaviors
* `#11770 https://github.com/scipy/scipy/issues/11770`__: crash in
TestEigh::test_value_subsets
* `#11795 https://github.com/scipy/scipy/issues/11795`__: trapz
distribution mean computed using single precision
* `#11800 https://github.com/scipy/scipy/issues/11800`__: Segmentation
fault in scipy.odr for multidimensional independent...
* `#11811 https://github.com/scipy/scipy/issues/11811`__: pyflakes
silently failing on travis-ci
* `#11826 https://github.com/scipy/scipy/issues/11826`__: Error with
_fblas
* `#11827 https://github.com/scipy/scipy/issues/11827`__:
\`fft.tests.test_numpy.test_multiprocess\` hangs on Python3.8...
* `#11835 https://github.com/scipy/scipy/issues/11835`__: tests with
\`multiprocessing\` hang on Python 3.8 on macOS
* `#11839 https://github.com/scipy/scipy/issues/11839`__: linalg.expm
returns nans with RuntimeWarning: overflow encountered...
* `#11856 https://github.com/scipy/scipy/issues/11856`__: Documentation
of fit methods for \`weibull_min\` and \`exponweib\`...
* `#11868 https://github.com/scipy/scipy/issues/11868`__: Function always
evaluated twice when using HessianUpdateStrategy...
* `#11875 https://github.com/scipy/scipy/issues/11875`__: Typo in the
docstring of simps()
* `#11877 https://github.com/scipy/scipy/issues/11877`__: kmeans2 '++'
method is orders of magnitude slower than sklearn.cluster.KMeans()
* `#11884 https://github.com/scipy/scipy/issues/11884`__: The upper code
lines are dead code
* `#11886 https://github.com/scipy/scipy/issues/11886`__: Array shape
mismatch in scipy.optimize
* `#11892 https://github.com/scipy/scipy/issues/11892`__: BUG: stats:
Incorrect handling of edges cases by ttest_rel and...
* `#11908 https://github.com/scipy/scipy/issues/11908`__: LinearOperator
should have ndim attribute
* `#11910 https://github.com/scipy/scipy/issues/11910`__: Documentation
missing for what M is in init argument
* `#11922 https://github.com/scipy/scipy/issues/11922`__: macOS actions
CI has started failing in last couple of days.
* `#11928 https://github.com/scipy/scipy/issues/11928`__: DOC: signal:
Wrong description for sepfir2d, cspline2d, qspline2d
* `#11944 https://github.com/scipy/scipy/issues/11944`__: curve_fit
documentation unclear on default value of absolute_sigma
* `#11945 https://github.com/scipy/scipy/issues/11945`__: Add a
(potentially temporary) py.typed file?
* `#11949 https://github.com/scipy/scipy/issues/11949`__: ValueError 'k
exceeds matrix dimensions' for sparse.diagonal()...
* `#11951 https://github.com/scipy/scipy/issues/11951`__: BUG: asv
benchmark failed because of cython version
* `#11967 https://github.com/scipy/scipy/issues/11967`__: BLD: Azure
windows runs complain about drives
* `#11973 https://github.com/scipy/scipy/issues/11973`__:
oaconvolve(a,b,'same') differs in shape from convolve(a,b,'same')...
* `#12002 https://github.com/scipy/scipy/issues/12002`__: pybind11 license
* `#12003 https://github.com/scipy/scipy/issues/12003`__: MAINT: circular
SphericalVoronoi input
* `#12015 https://github.com/scipy/scipy/issues/12015`__: Reordering of
CSC matrix breaks when you go above int32 limits
* `#12031 https://github.com/scipy/scipy/issues/12031`__: Documentation
Rendering Issues Visible in CircleCI Artifacts
* `#12037 https://github.com/scipy/scipy/issues/12037`__: MAINT, CI: new
Cython 3.0a4 issue
* `#12087 https://github.com/scipy/scipy/issues/12087`__: DOC: some odr
models are missing docs
* `#12119 https://github.com/scipy/scipy/issues/12119`__:
signal.fftconvolve no longer convolves types f8 and numpy.float64
* `#12149 https://github.com/scipy/scipy/issues/12149`__: Documentation
of Rosenbrock function
* `#12173 https://github.com/scipy/scipy/issues/12173`__: Large memory
usage when indexing sparse matrices with \`np.ix_\`
* `#12178 https://github.com/scipy/scipy/issues/12178`__: BUG: stats:
Some discrete distributions don't accept lists of...
* `#12220 https://github.com/scipy/scipy/issues/12220`__: BUG, REL:
gh_lists.py compromised scraping
* `#12239 https://github.com/scipy/scipy/issues/12239`__: BUG: median
absolute deviation handling of nan
* `#12301 https://github.com/scipy/scipy/issues/12301`__: integer
overflow in scipy.sparse.sputils.check_shape when matrix size > 2^32
* `#12314 https://github.com/scipy/scipy/issues/12314`__:
scipy.spatial.transform.Rotation multiplication does not normalize
quaternion
Pull requests for 1.5.0
- -----------------------
* `#6510 https://github.com/scipy/scipy/pull/6510`__: Add Eigenvalue
Range Functionality for Symmetric Eigenvalue Problems
* `#9525 https://github.com/scipy/scipy/pull/9525`__: BUG: SuperLU
'NATURAL' order applies a column permutation
* `#9634 https://github.com/scipy/scipy/pull/9634`__: Add the number of
Jacobian evaluations to the output of L-BFGS-B.
* `#9719 https://github.com/scipy/scipy/pull/9719`__: ENH: Added kstwo
probability distribution for two-sided one-sample...
* `#9783 https://github.com/scipy/scipy/pull/9783`__: WIP: optimize:
added (dense) interpolative decomposition redundancy...
* `#10053 https://github.com/scipy/scipy/pull/10053`__: Adding docstring
to weibull_min and weibull_max based on issue...
* `#10136 https://github.com/scipy/scipy/pull/10136`__: DEP: Add warning
to linprog_verbose_callback
* `#10380 https://github.com/scipy/scipy/pull/10380`__: ENH: add
geometric_slerp
* `#10602 https://github.com/scipy/scipy/pull/10602`__: MAINT: optimize:
refactor common linprog arguments into namedtuple
* `#10648 https://github.com/scipy/scipy/pull/10648`__: Bounds for the
Powell minimization method
* `#10673 https://github.com/scipy/scipy/pull/10673`__: ENH:
approx_fprime --> approx_derivative
* `#10759 https://github.com/scipy/scipy/pull/10759`__: ENH: calculation
of region areas in spatial.SphericalVoronoi
* `#10762 https://github.com/scipy/scipy/pull/10762`__: BENCH: optimize:
more comprehensive linprog benchmarking
* `#10796 https://github.com/scipy/scipy/pull/10796`__: ENH exact
p-values of wilcoxon test in scipy.stats
* `#10797 https://github.com/scipy/scipy/pull/10797`__: ENH: linalg: LU
with full pivoting (wrappers for ?getc2/?gesc2)
* `#10824 https://github.com/scipy/scipy/pull/10824`__: ENH: Fast
gaussian kernel estimator
* `#10942 https://github.com/scipy/scipy/pull/10942`__: BUG: prevent
bound violation in L-BFGS-B optimize method
* `#11003 https://github.com/scipy/scipy/pull/11003`__: ENH: add
scipy.linalg.convolution_matrix
* `#11023 https://github.com/scipy/scipy/pull/11023`__: improving error
message for cubic-interpolate with duplicates
* `#11045 https://github.com/scipy/scipy/pull/11045`__: MAINT: make
bdt{r,rc,ri}() functions accept double n,k args +...
* `#11063 https://github.com/scipy/scipy/pull/11063`__: Fix documentation
error in optimize.minimize
* `#11069 https://github.com/scipy/scipy/pull/11069`__: ENH:
stats.dlaplace.rvs improvements
* `#11071 https://github.com/scipy/scipy/pull/11071`__: DOC: Added
examples to maximum_position in ndimage
* `#11075 https://github.com/scipy/scipy/pull/11075`__: DOC: Update
stylistic consistency in multiple files
* `#11097 https://github.com/scipy/scipy/pull/11097`__: BUG: stats:
fixing chisquare to return correct results for arrays...
* `#11110 https://github.com/scipy/scipy/pull/11110`__: ENH: special:
Cythonise erfinv, erfcinv
* `#11112 https://github.com/scipy/scipy/pull/11112`__: BUG: special:
Return NaN outside the domain of \`eval_hermite\`
* `#11114 https://github.com/scipy/scipy/pull/11114`__: BUG: special: fix
\`hyp1f1\` for nonnegative integral \`a\` and...
* `#11115 https://github.com/scipy/scipy/pull/11115`__: DOC: special: add
docstrings for \`kei\`, \`ker\`, \`keip\`,...
* `#11130 https://github.com/scipy/scipy/pull/11130`__: ENH: support for
circular input
* `#11136 https://github.com/scipy/scipy/pull/11136`__: BUG: expm
handling of empty input
* `#11138 https://github.com/scipy/scipy/pull/11138`__: DOC: stylistic
consistency, punctuation, etc.
* `#11139 https://github.com/scipy/scipy/pull/11139`__: MAINT: cluster:
use cython_blas, remove handwritten BLAS wrappers
* `#11146 https://github.com/scipy/scipy/pull/11146`__: DOC: update docs
on bp parameter for detrend
* `#11151 https://github.com/scipy/scipy/pull/11151`__: DOC: special: add
docstrings for \`bei\`, \`ber\`, \`beip\`,...
* `#11156 https://github.com/scipy/scipy/pull/11156`__: ENH: add input
validation for ellipord.
* `#11157 https://github.com/scipy/scipy/pull/11157`__: DOC: stylistic
revision, punctuation, consistency
* `#11160 https://github.com/scipy/scipy/pull/11160`__: ignore warning on
0 \* inf in basin hopping
* `#11162 https://github.com/scipy/scipy/pull/11162`__: DOC: minor
stylistic revision, undo changes
* `#11164 https://github.com/scipy/scipy/pull/11164`__: ENH/ BUG: Pydata
sparse equality
* `#11171 https://github.com/scipy/scipy/pull/11171`__: Fix dtype
validation of "seuclidean" metric V parameter
* `#11177 https://github.com/scipy/scipy/pull/11177`__: BUG: stats:
Improve genpareto stats calculations.
* `#11180 https://github.com/scipy/scipy/pull/11180`__: MAINT: stats:
Some clean up in test_distributions.py.
* `#11187 https://github.com/scipy/scipy/pull/11187`__: ENH: add
functionality log_softmax to SciPy.special.
* `#11188 https://github.com/scipy/scipy/pull/11188`__: MAINT: add rvs
method to argus in scipy.stats
* `#11196 https://github.com/scipy/scipy/pull/11196`__: DOC: special: add
to docstrings of Kelvin zeros functions
* `#11202 https://github.com/scipy/scipy/pull/11202`__: BUG: fix edge
counting in shortest_path
* `#11218 https://github.com/scipy/scipy/pull/11218`__: BUG:
scipy/interpolate: fix PPoly/Cubic\*Spline roots() extrapolation...
* `#11225 https://github.com/scipy/scipy/pull/11225`__: Add a warning to
constant input for spearmanr() function
* `#11226 https://github.com/scipy/scipy/pull/11226`__: Speed up of
interior-point method for cholesky solver
* `#11229 https://github.com/scipy/scipy/pull/11229`__: BUG: Explicit
dtype specification in _upfirdn.py
* `#11230 https://github.com/scipy/scipy/pull/11230`__: Additional
citation for optimize tutorial
* `#11231 https://github.com/scipy/scipy/pull/11231`__: Adds SLSQP test
for duplicate f-evals (#10738)
* `#11236 https://github.com/scipy/scipy/pull/11236`__: MAINT: Improved
error message for Wn range in iirfilter.
* `#11245 https://github.com/scipy/scipy/pull/11245`__: ENH: optimize:
dense redundancy removal routine optimizations
* `#11247 https://github.com/scipy/scipy/pull/11247`__: MAINT: Remove
_lib/_numpy_compat.py
* `#11248 https://github.com/scipy/scipy/pull/11248`__: BUG:
rv_discrete.ppf() to handle loc
* `#11251 https://github.com/scipy/scipy/pull/11251`__: DOC: add
reference for linesearch zoom algorithm
* `#11253 https://github.com/scipy/scipy/pull/11253`__: BUG: fix
kendalltau issue where p-value becomes >1
* `#11254 https://github.com/scipy/scipy/pull/11254`__: MAINT: make
special.factorial handle nan correctly
* `#11256 https://github.com/scipy/scipy/pull/11256`__: DOC: Updated
documentation for scipy.linalg.qr
* `#11265 https://github.com/scipy/scipy/pull/11265`__: Fix: Can no
longer slice csr_matrix in 1.3.0
* `#11267 https://github.com/scipy/scipy/pull/11267`__: BUG: Rework the
scaling in the ks_2samp two-sided exact test.
* `#11268 https://github.com/scipy/scipy/pull/11268`__: DOC: example of
NonLinearConstraint
* `#11269 https://github.com/scipy/scipy/pull/11269`__: Fix: Sparse
matrix constructor data type detection changes on...
* `#11276 https://github.com/scipy/scipy/pull/11276`__: BLD: update
minimum Python, NumPy, Cython, Pybind11 versions
* `#11277 https://github.com/scipy/scipy/pull/11277`__: MAINT: Cleanup
conditionals for unsupported numpy verisons
* `#11278 https://github.com/scipy/scipy/pull/11278`__: MAINT: Cleanup
stats.iqr workarounds for unsupported NumPy versions
* `#11282 https://github.com/scipy/scipy/pull/11282`__: TST/CI: improve
traceback formatting for test failures
* `#11284 https://github.com/scipy/scipy/pull/11284`__: fix docs &
behavior for mode sequences in ndimage filters
* `#11285 https://github.com/scipy/scipy/pull/11285`__: DOC: special:
complete the docstrings of Chi-square functions
* `#11286 https://github.com/scipy/scipy/pull/11286`__: BUG: make
loadmat/savemat file opening close resources correctly
* `#11287 https://github.com/scipy/scipy/pull/11287`__: CI: skip Azure
and TravisCI builds on merges and direct pushes...
* `#11288 https://github.com/scipy/scipy/pull/11288`__: DOC: Fix import
in scipy.io.wavfile.read sample code
* `#11289 https://github.com/scipy/scipy/pull/11289`__: BUG: Use context
manager for open
* `#11290 https://github.com/scipy/scipy/pull/11290`__: MAINT: Remove
_lib._version in favour of _lib._pep440
* `#11292 https://github.com/scipy/scipy/pull/11292`__: DOC: special: add
docstrings for various convenience functions
* `#11293 https://github.com/scipy/scipy/pull/11293`__: DOC: special: fix
typo in \`chdtri\` docstring
* `#11296 https://github.com/scipy/scipy/pull/11296`__: DOC: special: add
to docstrings of Bessel zeros and derivatives
* `#11297 https://github.com/scipy/scipy/pull/11297`__: DOC: special: add
parameters/returns sections for Bessel integrals
* `#11300 https://github.com/scipy/scipy/pull/11300`__: MAINT: Update
vendored uarray version
* `#11301 https://github.com/scipy/scipy/pull/11301`__: CI: azure
conditions should require succeeded()
* `#11302 https://github.com/scipy/scipy/pull/11302`__: ENH: build
infrastructure for ILP64 BLAS + ARPACK conversion
* `#11303 https://github.com/scipy/scipy/pull/11303`__: DOC: special: fix
typo in \`besselpoly\` docstring
* `#11304 https://github.com/scipy/scipy/pull/11304`__: ENH: MAINT:
Rewrite of eigh() and relevant wrappers
* `#11306 https://github.com/scipy/scipy/pull/11306`__: TST: skip
test_aligned_mem linalg test that is crashing on ppcle64
* `#11307 https://github.com/scipy/scipy/pull/11307`__: MAINT: Fix typo
'solutuion' -> 'solution'
* `#11308 https://github.com/scipy/scipy/pull/11308`__: ENH: do not
create 1d array out of a scalar
* `#11310 https://github.com/scipy/scipy/pull/11310`__: MAINT: clean up
object array creation, scalar/1d confusion
* `#11311 https://github.com/scipy/scipy/pull/11311`__: DOC: Specify
custom callable option for metric in cluster.hierarchy.fclusterdata
* `#11316 https://github.com/scipy/scipy/pull/11316`__: BUG: special: fix
behavior for \`rgamma\` zeros
* `#11317 https://github.com/scipy/scipy/pull/11317`__: BUG: fix
floating-point literal comparisons under C99
* `#11318 https://github.com/scipy/scipy/pull/11318`__: TST: optimize:
mark two linprog tests for skipping
* `#11320 https://github.com/scipy/scipy/pull/11320`__: BUG: Include
\`int64_t\` declaration to \`rectangular_lsap.cpp\`
* `#11330 https://github.com/scipy/scipy/pull/11330`__: MAINT: Update
vendored pypocketfft version
* `#11333 https://github.com/scipy/scipy/pull/11333`__: BUG:
directed_hausdorff subset fix
* `#11335 https://github.com/scipy/scipy/pull/11335`__: [ENH] sparse:
Loosen check for sparse outer indexing fast path
* `#11337 https://github.com/scipy/scipy/pull/11337`__: Undefined name
'e' in pavement.py
* `#11338 https://github.com/scipy/scipy/pull/11338`__: scipyoptdoc.py:
Remove unused variable 'sixu'
* `#11340 https://github.com/scipy/scipy/pull/11340`__: xrange() was
removed in Python 3 in favor of range()
* `#11342 https://github.com/scipy/scipy/pull/11342`__: range() was
removed in Py3 in _binned_statistic.py
* `#11343 https://github.com/scipy/scipy/pull/11343`__: BUG: constants:
fix 'exact' values table
* `#11347 https://github.com/scipy/scipy/pull/11347`__: ENH: add input
validation function and apply it to needed functions
* `#11348 https://github.com/scipy/scipy/pull/11348`__: MAINT: remove
six.string_types usages
* `#11349 https://github.com/scipy/scipy/pull/11349`__: MAINT: minor doc
fix _minimize_trustregion_constr
* `#11353 https://github.com/scipy/scipy/pull/11353`__: MAINT: py3 remove
various six usages
* `#11358 https://github.com/scipy/scipy/pull/11358`__: ENH: optimize:
Use CSR format instead of LIL for speed
* `#11362 https://github.com/scipy/scipy/pull/11362`__: MAINT:
sys.version_info >= 3.5
* `#11364 https://github.com/scipy/scipy/pull/11364`__: ENH: cache square
of sums for f_oneway
* `#11368 https://github.com/scipy/scipy/pull/11368`__: ENH: add optional
argument, "include_nyquist", for freqz()
* `#11372 https://github.com/scipy/scipy/pull/11372`__: BENCH: optimize:
added linprog presolve benchmarks
* `#11376 https://github.com/scipy/scipy/pull/11376`__: ENH: Add wrapper
for ?gttrf/?gttrs
* `#11377 https://github.com/scipy/scipy/pull/11377`__: MAINT: Remove
Python 2 code from tools/authors.py
* `#11378 https://github.com/scipy/scipy/pull/11378`__: ENH (WIP): Python
wrapper for ?tbtrs
* `#11379 https://github.com/scipy/scipy/pull/11379`__: MAINT: Remove
six.with_metaclass from benchmarks/cython_special.py
* `#11380 https://github.com/scipy/scipy/pull/11380`__: BUG:
sparse/isolve: bicg and qmr don't treat x0 correctly
* `#11382 https://github.com/scipy/scipy/pull/11382`__: MAINT: remove
error throw in binned_statistic_dd() on non-finite...
* `#11383 https://github.com/scipy/scipy/pull/11383`__: MAINT: _lib:
remove py2 compat shims in getargspec
* `#11384 https://github.com/scipy/scipy/pull/11384`__: MAINT: Use numpy
scalar types directly
* `#11385 https://github.com/scipy/scipy/pull/11385`__: ENH: special: add
spherical Bessel functions to \`cython_special\`
* `#11389 https://github.com/scipy/scipy/pull/11389`__: MAINT:
line.startswith shouldn't be bytes
* `#11393 https://github.com/scipy/scipy/pull/11393`__: ENH: Speed up
truncnorm's ppf()and rvs() methods
* `#11394 https://github.com/scipy/scipy/pull/11394`__: MAINT: Remove
self._size (and self._random_state) from stats...
* `#11395 https://github.com/scipy/scipy/pull/11395`__: correction in
error message (%d->%g format)
* `#11396 https://github.com/scipy/scipy/pull/11396`__: DOC: revert
gh10540, removing mtrand
* `#11397 https://github.com/scipy/scipy/pull/11397`__: MAINT:
differential_evolution accepts np.random.Generator
* `#11402 https://github.com/scipy/scipy/pull/11402`__: ENH: stats can
use np.random.Generator
* `#11404 https://github.com/scipy/scipy/pull/11404`__: ENH: add
docstring of butter() for transfer function syntax problem
* `#11405 https://github.com/scipy/scipy/pull/11405`__: DOC: Fix "see
also" for SmoothBivariateSpline
* `#11408 https://github.com/scipy/scipy/pull/11408`__: ENH: Add a
\`plan\` argument to FFT functions in \`scipy.fft\`
* `#11411 https://github.com/scipy/scipy/pull/11411`__: MAINT: check
minimize duplicate evaluations
* `#11418 https://github.com/scipy/scipy/pull/11418`__: ENH: Linalg:
Python wrapper for ?geqrfp
* `#11419 https://github.com/scipy/scipy/pull/11419`__: TST: Python 3.7
mac OS gcc multibuild fix
* `#11423 https://github.com/scipy/scipy/pull/11423`__: ENH: Add tool to
lint diffs
* `#11425 https://github.com/scipy/scipy/pull/11425`__: FIX:
_array_newton should preserve complex inputs
* `#11426 https://github.com/scipy/scipy/pull/11426`__: MAINT: licence
for global optimization benchmarks
* `#11431 https://github.com/scipy/scipy/pull/11431`__: Make
median_absolute_deviation scale argument aligned w/iqr
* `#11432 https://github.com/scipy/scipy/pull/11432`__: Fix error message
typo
* `#11433 https://github.com/scipy/scipy/pull/11433`__: DOC: Remove L
from longs
* `#11434 https://github.com/scipy/scipy/pull/11434`__: MAINT: Python3
improvements to refguide_check.py
* `#11435 https://github.com/scipy/scipy/pull/11435`__: DOC: Update
runtest --parallel help
* `#11436 https://github.com/scipy/scipy/pull/11436`__: MAINT: Remove
checks for sys.version < 3.5
* `#11437 https://github.com/scipy/scipy/pull/11437`__: DOC: Fix
documentation issue
* `#11439 https://github.com/scipy/scipy/pull/11439`__: Support path
objects (PEP 519) in mmio functions
* `#11440 https://github.com/scipy/scipy/pull/11440`__: correct bounds
pass in run_dualannealing for benchmarks/optimize.py
* `#11443 https://github.com/scipy/scipy/pull/11443`__: BENCH:
optimize_linprog remove ImportError exception
* `#11453 https://github.com/scipy/scipy/pull/11453`__: BUG: sparse:
convert csc/csr indices to int64 as needed
* `#11454 https://github.com/scipy/scipy/pull/11454`__: DOC: Remove
caveat on \`maximum_bipartite_matching\`
* `#11455 https://github.com/scipy/scipy/pull/11455`__: BUG: Fix
_lib._util.getargspec_no_self lack of KEYWORD_ONLY support.
* `#11456 https://github.com/scipy/scipy/pull/11456`__: Implementation of
khatri_rao product
* `#11459 https://github.com/scipy/scipy/pull/11459`__: BUG: fix
augmentation being broken in maximum_bipartite_matching
* `#11461 https://github.com/scipy/scipy/pull/11461`__: MAINT: minor
spelling corrections in comments in SciPy.sparse.linalg.arpack
* `#11467 https://github.com/scipy/scipy/pull/11467`__: [MRG] Make result
data type of KDE evaluation like in the input...
* `#11469 https://github.com/scipy/scipy/pull/11469`__: Update
integrate.quad documentation
* `#11472 https://github.com/scipy/scipy/pull/11472`__: Fixed result typo
* `#11476 https://github.com/scipy/scipy/pull/11476`__: DOC: stats:
Copy-edit the anderson docstring.
* `#11478 https://github.com/scipy/scipy/pull/11478`__: ENH: avoid
unnecessary array copies in matrix product
* `#11481 https://github.com/scipy/scipy/pull/11481`__: BUG: Make
special.hyperu return nan if any argument is nan
* `#11483 https://github.com/scipy/scipy/pull/11483`__: BUG: Fixed
\`_kpp\` initialization on \`scipy.cluster.vq\`, closing...
* `#11485 https://github.com/scipy/scipy/pull/11485`__: ENH: Update
docstring of class KrylovJacobian to fix #2744
* `#11486 https://github.com/scipy/scipy/pull/11486`__: BUG: make
special.eval_hermite return nan if second argument...
* `#11487 https://github.com/scipy/scipy/pull/11487`__: ENH: improve
docstring of correlate and correlate2d to fix #1968
* `#11488 https://github.com/scipy/scipy/pull/11488`__: FIX: change "func
-> fun" of scipy.optimize _root.py to solve...
* `#11489 https://github.com/scipy/scipy/pull/11489`__: BUG: fixes typo
introduced in PR #11253 in stats.mstats.kendalltau()
* `#11490 https://github.com/scipy/scipy/pull/11490`__: DOC: fix typo in
scipy/io/matlab/mio4.py
* `#11495 https://github.com/scipy/scipy/pull/11495`__: MAINT: refactor
slsqp to fix issue in callback function
* `#11498 https://github.com/scipy/scipy/pull/11498`__: [DOC] mention
graph cuts in maximum flow docstring
* `#11499 https://github.com/scipy/scipy/pull/11499`__: DOC: Improve
documentation of scipy.signal.signaltools.wiener
* `#11506 https://github.com/scipy/scipy/pull/11506`__: DOC: Fix typo in
documentation of scipy.stats.morestats
* `#11508 https://github.com/scipy/scipy/pull/11508`__: ENH: avoid copy
on sparse __init__ when dtype is given
* `#11509 https://github.com/scipy/scipy/pull/11509`__: ENH: avoid
unnecessary array copies in matrix product (again)
* `#11510 https://github.com/scipy/scipy/pull/11510`__: [DOC] An ex. for
creating arbitrary size tri-diagonal
* `#11511 https://github.com/scipy/scipy/pull/11511`__: TST: pin numba
for Travis/sparse
* `#11513 https://github.com/scipy/scipy/pull/11513`__: TST: disable
NumPy cache dir ppc64le
* `#11514 https://github.com/scipy/scipy/pull/11514`__: BUG: make
special.eval_genlaguerre return nan if passed nan
* `#11517 https://github.com/scipy/scipy/pull/11517`__: ENH: improve
sparse.lil.tocsr performance
* `#11519 https://github.com/scipy/scipy/pull/11519`__: Fix fresnel
documentation
* `#11520 https://github.com/scipy/scipy/pull/11520`__: BUG: make
special.eval_gegenbauer return nan if passed nan
* `#11524 https://github.com/scipy/scipy/pull/11524`__: ENH: Cosine Sine
Decomposition
* `#11526 https://github.com/scipy/scipy/pull/11526`__: BUG: fix SLSQP
max iteration setting to fix #4921
* `#11527 https://github.com/scipy/scipy/pull/11527`__: ENH: improve
docstring of weibull_min_gen and weibull_max_gen...
* `#11530 https://github.com/scipy/scipy/pull/11530`__: MAINT: Removed 3
unused imports, 3 unused assignments from ndimage.
* `#11531 https://github.com/scipy/scipy/pull/11531`__: DOC: fix typos in
bdtr and bdtrc from gh PR 11045
* `#11532 https://github.com/scipy/scipy/pull/11532`__: MAINT: Fixed
several unused imports and unused assignments from...
* `#11533 https://github.com/scipy/scipy/pull/11533`__: MAINT: Fixed
about 100 unused imports, unused assignment warnings...
* `#11534 https://github.com/scipy/scipy/pull/11534`__: FIX: Allow
non-native byte order inputs to scipy.fft
* `#11535 https://github.com/scipy/scipy/pull/11535`__: MAINT: Fixed
several unused imports in _lib.
* `#11536 https://github.com/scipy/scipy/pull/11536`__: MAINT: Fixed
several unused imports and unused assignments in...
* `#11537 https://github.com/scipy/scipy/pull/11537`__: MAINT: Removed an
unused import in scipy/constants.
* `#11538 https://github.com/scipy/scipy/pull/11538`__: MAINT: Fixed
several unused imports in scipy/fft.
* `#11539 https://github.com/scipy/scipy/pull/11539`__: MAINT: Fixed
several unused imports and unused assignments in...
* `#11540 https://github.com/scipy/scipy/pull/11540`__: MAINT: Fixed two
unused imports in scipy/misc.
* `#11541 https://github.com/scipy/scipy/pull/11541`__: MAINT: Fixed
several unused imports and unused assignments in...
* `#11542 https://github.com/scipy/scipy/pull/11542`__: MAINT: Fixed an
unused import in scipy/odr.
* `#11543 https://github.com/scipy/scipy/pull/11543`__: MAINT: Fixed
several unused imports and unused assignments in...
* `#11544 https://github.com/scipy/scipy/pull/11544`__: MAINT: Fixed
unused imports and unused assignments in scipy/integrate.
* `#11545 https://github.com/scipy/scipy/pull/11545`__: MAINT: Removed
unused imports and fixed unused assignments in...
* `#11546 https://github.com/scipy/scipy/pull/11546`__: MAINT: Removed
unused imports; fixed unused assignments in scipy/signal.
* `#11547 https://github.com/scipy/scipy/pull/11547`__: MAINT: Removed
unused imports; fixed unused assignments in scipy/spatial
* `#11548 https://github.com/scipy/scipy/pull/11548`__: MAINT: Removed
unused imports; fixed unused assignments in scipy.sparse.
* `#11549 https://github.com/scipy/scipy/pull/11549`__: MAINT: Replace
xrange with range
* `#11560 https://github.com/scipy/scipy/pull/11560`__: MAINT: stats:
remove an _argcheck call
* `#11573 https://github.com/scipy/scipy/pull/11573`__: MAINT: Removed
unused imports; fixed unused assignments in scipy/stats.
* `#11574 https://github.com/scipy/scipy/pull/11574`__: MAINT: Small
change to \`optimize.nnls\` error messages.
* `#11575 https://github.com/scipy/scipy/pull/11575`__: MAINT: Update
sytrd/hetrd tests
* `#11582 https://github.com/scipy/scipy/pull/11582`__: MAINT: fix typo
in quadpack.py closes #11448
* `#11585 https://github.com/scipy/scipy/pull/11585`__: TST: add
openblas_support.py
* `#11587 https://github.com/scipy/scipy/pull/11587`__: BUG: Differential
evolution with LinearConstraint with sparse...
* `#11588 https://github.com/scipy/scipy/pull/11588`__: MAINT: Fully
display problem size in lsmr/lsqr.
* `#11589 https://github.com/scipy/scipy/pull/11589`__: MAINT: Remove
Python 2 workarounds
* `#11590 https://github.com/scipy/scipy/pull/11590`__: MAINT: Remove
Python2 module init
* `#11605 https://github.com/scipy/scipy/pull/11605`__: Standardization
of bounds in _linprog_util.py
* `#11608 https://github.com/scipy/scipy/pull/11608`__: BUG: fix use of
is in DE callback
* `#11614 https://github.com/scipy/scipy/pull/11614`__: TST, MAINT:
TestCtypesQuad skip with pytest
* `#11619 https://github.com/scipy/scipy/pull/11619`__: ENH: add
nan_policy argument and functionality to stats.mstats.winsorize
* `#11621 https://github.com/scipy/scipy/pull/11621`__: MAINT: Cleanup
uses of PY_VERSION_HEX, NPY_PY3K in ndimage
* `#11622 https://github.com/scipy/scipy/pull/11622`__: MAINT: Cleanup
uses of PY_VERSION_HEX, NPY_PY3K in sparse
* `#11623 https://github.com/scipy/scipy/pull/11623`__: MAINT: Remove
unnecessary 'from __future__ import ...' statements
* `#11626 https://github.com/scipy/scipy/pull/11626`__: MAINT: Cleanup
uses of PY_VERSION_HEX
* `#11627 https://github.com/scipy/scipy/pull/11627`__: ENH: add analytic
formula for normal moments
* `#11628 https://github.com/scipy/scipy/pull/11628`__: MAINT, TST:
adjust azure for matplotlib release
* `#11631 https://github.com/scipy/scipy/pull/11631`__: Revert to old
behaviour for constant cost matrices in \`linear_sum_assignment\`
* `#11632 https://github.com/scipy/scipy/pull/11632`__: MAINT: Define
ARRAY_ANYORDER with DEF instead of cdef
* `#11639 https://github.com/scipy/scipy/pull/11639`__: BUG:
interpolate/interp1d: fail gracefully on all-nan inputs
* `#11640 https://github.com/scipy/scipy/pull/11640`__: MAINT: Fix BLAS3
trmm wrapper for "side" arg
* `#11642 https://github.com/scipy/scipy/pull/11642`__: TST, MAINT:
remove dead code in Travis CI
* `#11643 https://github.com/scipy/scipy/pull/11643`__: MAINT: fix
conversion in binom_test
* `#11645 https://github.com/scipy/scipy/pull/11645`__: MAINT: Assorted
clean up.
* `#11646 https://github.com/scipy/scipy/pull/11646`__: MAINT: Remove
unnecessary 'from __future__ import ...' statements
* `#11647 https://github.com/scipy/scipy/pull/11647`__: DOC: document
return_all arguments
* `#11648 https://github.com/scipy/scipy/pull/11648`__: Perform geometric
slerp in quaternion space
* `#11651 https://github.com/scipy/scipy/pull/11651`__: DOC: Update paper
URL in lambertw documentation
* `#11653 https://github.com/scipy/scipy/pull/11653`__: PERF: Switch to
C++ STL std::nth_element
* `#11655 https://github.com/scipy/scipy/pull/11655`__: MAINT: Remove
Python2 cStringStream
* `#11657 https://github.com/scipy/scipy/pull/11657`__: ENH: Add wrapper
for ?pttrf/?pttrs
* `#11664 https://github.com/scipy/scipy/pull/11664`__: ENH: Add wrapper
for ?gejsv
* `#11665 https://github.com/scipy/scipy/pull/11665`__: ENH: Add wrapper
for ?pteqr
* `#11667 https://github.com/scipy/scipy/pull/11667`__: BUG: Non-central
Fisher distribution (fix nan-values when nc=0)
* `#11668 https://github.com/scipy/scipy/pull/11668`__: ENH: Add wrapper
for ?gtsvx
* `#11671 https://github.com/scipy/scipy/pull/11671`__: TST, CI: restore
Azure temporarily
* `#11672 https://github.com/scipy/scipy/pull/11672`__: Add warning to
medfilt when array size < kernel_size
* `#11674 https://github.com/scipy/scipy/pull/11674`__: TST: bump test
precision for two np.dot related linalg tests.
* `#11675 https://github.com/scipy/scipy/pull/11675`__: MAINT:
pycodestyle clean-up
* `#11677 https://github.com/scipy/scipy/pull/11677`__: ENH: Add wrapper
for ?ptsvx
* `#11679 https://github.com/scipy/scipy/pull/11679`__: BENCH: cKDTree
benchmarks added: balanced/unbalanced tree (related...
* `#11680 https://github.com/scipy/scipy/pull/11680`__: MAINT:
rng_integers allows RandomState.randint or Generator.integers
* `#11683 https://github.com/scipy/scipy/pull/11683`__: BUG: fix
mode='mirror' on length 1 axes
* `#11684 https://github.com/scipy/scipy/pull/11684`__: BUG: fix
scipy.special.voigt_profile
* `#11687 https://github.com/scipy/scipy/pull/11687`__: MAINT:
sparse.linalg: avoid importing from \`np.core\`
* `#11688 https://github.com/scipy/scipy/pull/11688`__: ENH: mypy: get
specific about ignoring missing imports
* `#11690 https://github.com/scipy/scipy/pull/11690`__: MAINT: mypy: fix
errors about incompatible types in lists
* `#11692 https://github.com/scipy/scipy/pull/11692`__: MAINT: mypy: fix
remaining type errors
* `#11694 https://github.com/scipy/scipy/pull/11694`__: TST, MAINT: bump
to OpenBLAS 0.3.9 stable, raise tol for Win...
* `#11697 https://github.com/scipy/scipy/pull/11697`__: DOC: fix pdf of
norminvgauss in scipy.stats
* `#11701 https://github.com/scipy/scipy/pull/11701`__: MAINT: special:
add rudimentary types for \`_ufuncs\` extension...
* `#11702 https://github.com/scipy/scipy/pull/11702`__: BUG: Fixed a
post-merge bug for eigh()
* `#11703 https://github.com/scipy/scipy/pull/11703`__: Improves
docstring with consistent L2-norm
* `#11705 https://github.com/scipy/scipy/pull/11705`__: DOC: Slerp the
SphericalVoronoi docstring
* `#11706 https://github.com/scipy/scipy/pull/11706`__: ENH: mypy: add
\`--mypy\` option to \`runtests.py\`
* `#11710 https://github.com/scipy/scipy/pull/11710`__: ENH: Modified
stats.kstest() to use the exact stats.kstwo.sf()...
* `#11715 https://github.com/scipy/scipy/pull/11715`__: DOC: add ..
versionadded:: to as_matrix/from_matrix in spatial/transf…
* `#11716 https://github.com/scipy/scipy/pull/11716`__: BENCH: fix
benchmark imports for \`\`optimize_linprog.py\`\`
* `#11721 https://github.com/scipy/scipy/pull/11721`__: MAINT: io: Remove
now-unnecessary \`# type: ignore\`
* `#11722 https://github.com/scipy/scipy/pull/11722`__: MAINT: mypy:
remove mpmath from the ratchet
* `#11726 https://github.com/scipy/scipy/pull/11726`__: Handle constant
input for scipy.stats.f_oneway
* `#11729 https://github.com/scipy/scipy/pull/11729`__: BENCH: optimize:
added infeasible benchmarks for linprog
* `#11731 https://github.com/scipy/scipy/pull/11731`__: fix inaccurate
information about Mac OS compiler (#11696)
* `#11733 https://github.com/scipy/scipy/pull/11733`__: Fix inaccurate
docstring example of HalfspaceIntersection
* `#11734 https://github.com/scipy/scipy/pull/11734`__: Doc: fix
inaccurate docstring of SmoothBivariateSpline.
* `#11735 https://github.com/scipy/scipy/pull/11735`__: Bug: stats: fix
wrong shape from median_absolute_deviation for...
* `#11736 https://github.com/scipy/scipy/pull/11736`__: ENH: add input
validations and its tests for FITPACK in fitpack2.py
* `#11737 https://github.com/scipy/scipy/pull/11737`__: BUG: Prevent
crashes due to MKL bug in ?heevr
* `#11739 https://github.com/scipy/scipy/pull/11739`__: MAINT: special:
add type stubs for \`_test_round.pyx\`
* `#11740 https://github.com/scipy/scipy/pull/11740`__: MAINT: special:
remove unused specfun f2py wrappers
* `#11741 https://github.com/scipy/scipy/pull/11741`__: BUG: fix small
tolerances handling for minpack and add a test.
* `#11743 https://github.com/scipy/scipy/pull/11743`__: Doc: fix
docstring of rfft, rfft2, rfftn, irfft, irfft2, irfftn...
* `#11744 https://github.com/scipy/scipy/pull/11744`__: MAINT: Remove
unused py3k.h code
* `#11745 https://github.com/scipy/scipy/pull/11745`__: DOC: stats: Clean
up ncf documentation.
* `#11748 https://github.com/scipy/scipy/pull/11748`__: MAINT: special:
type \`cython_special\` as \`Any\`
* `#11750 https://github.com/scipy/scipy/pull/11750`__: MAINT: type hints
for \`_spherical_voronoi\`
* `#11752 https://github.com/scipy/scipy/pull/11752`__: DOC: fix
docstring of scipy.optimize.least_squares
* `#11753 https://github.com/scipy/scipy/pull/11753`__: ENH: add input
validation for dendrogram and a test.
* `#11755 https://github.com/scipy/scipy/pull/11755`__: MAINT: Replace
uses of tostring with tobytes
* `#11757 https://github.com/scipy/scipy/pull/11757`__: ENH: improve
binned_statistics_2d performance.
* `#11759 https://github.com/scipy/scipy/pull/11759`__: ENH: optimize:
add HiGHS methods to linprog
* `#11760 https://github.com/scipy/scipy/pull/11760`__: MAINT: Remove
FileStream replaced by GenericStream
* `#11761 https://github.com/scipy/scipy/pull/11761`__: MAINT: Replace
npy_3kcompat.h shims
* `#11765 https://github.com/scipy/scipy/pull/11765`__: TST: Speedup
test_pascal which is VERY slow on Azure
* `#11766 https://github.com/scipy/scipy/pull/11766`__: TST: speed up
differential_evolution L8 test
* `#11767 https://github.com/scipy/scipy/pull/11767`__: Change comment in
continuous rv gamma fit function
* `#11776 https://github.com/scipy/scipy/pull/11776`__: Add domain option
for resample.
* `#11784 https://github.com/scipy/scipy/pull/11784`__: BUG: Fixed
calculation of nonzero elements in scipy.sparse.random
* `#11786 https://github.com/scipy/scipy/pull/11786`__: ENH: stats: add
axis keyword argument to scipy.stats.rankdata
* `#11789 https://github.com/scipy/scipy/pull/11789`__: Doc: fix
docstring of scipy.spatial.chebyshev
* `#11792 https://github.com/scipy/scipy/pull/11792`__: DOC: dev: add
guidelines for developing public Cython APIs
* `#11794 https://github.com/scipy/scipy/pull/11794`__: MAINT: add
comments explaining a problem in cython_optimize organization
* `#11796 https://github.com/scipy/scipy/pull/11796`__: DOC: add a note
about precision losing in csgraph.minimum_spanning_tree...
* `#11797 https://github.com/scipy/scipy/pull/11797`__: ENH: Allow
negative \`axis\` in \`interpolate.BSpline\`. Also...
* `#11798 https://github.com/scipy/scipy/pull/11798`__: Add
simplify_cells parameter to scipy.io.loadmat
* `#11801 https://github.com/scipy/scipy/pull/11801`__: MAINT, DOC: minor
changes of ratio-of-uniforms in scipy.stats
* `#11802 https://github.com/scipy/scipy/pull/11802`__: BUG: fix
scipy.odr to handle multidimensional independent and...
* `#11803 https://github.com/scipy/scipy/pull/11803`__:
scipy.stats.trapz: Use analytic formulas for stats and entropy.
* `#11808 https://github.com/scipy/scipy/pull/11808`__: DOC: add Examples
in the scipy.interpolate.interpn docstring.
* `#11809 https://github.com/scipy/scipy/pull/11809`__: Duplicate entries
are added together in csr_matrix constructor
* `#11813 https://github.com/scipy/scipy/pull/11813`__: MAINT: bump
pyflakes to version 2.1.1
* `#11814 https://github.com/scipy/scipy/pull/11814`__: BUG:
scipy.sparse.csr doctest failing with incorrect output value
* `#11817 https://github.com/scipy/scipy/pull/11817`__: DOC: add Examples
in the scipy.optimize.leastsq docstring
* `#11820 https://github.com/scipy/scipy/pull/11820`__: ENH: Raise an
error on incorrect bounds format in optimize.fmin_l_bfgs_b
* `#11822 https://github.com/scipy/scipy/pull/11822`__: CI: add github
actions for macOS
* `#11824 https://github.com/scipy/scipy/pull/11824`__: DOC: add Examples
in scipy.optimize.line_search docstring (line_search_wolfe2)
* `#11830 https://github.com/scipy/scipy/pull/11830`__: TST: Always use
fork for multiprocessing in fft tests
* `#11831 https://github.com/scipy/scipy/pull/11831`__: DOC: add Examples
and Returns in scipy.misc.central_diff_weights...
* `#11832 https://github.com/scipy/scipy/pull/11832`__: DOC: stats: Some
small corrections to a couple docstrings.
* `#11833 https://github.com/scipy/scipy/pull/11833`__: BUG: Fix
compiler_name when there are paths used in flags
* `#11836 https://github.com/scipy/scipy/pull/11836`__: MAINT:
re-introduce multiprocessing tests on Python3.8
* `#11837 https://github.com/scipy/scipy/pull/11837`__: Doc: add Examples
in scipy.optimize.fsolve docstring
* `#11838 https://github.com/scipy/scipy/pull/11838`__: Doc: add Examples
in scipy.sparse.linalg.minres docstring
* `#11840 https://github.com/scipy/scipy/pull/11840`__: BUG:
sparse.linalg: fix overflow in expm intermediate computation
* `#11842 https://github.com/scipy/scipy/pull/11842`__: BLD: fix build
with gfortran 10
* `#11843 https://github.com/scipy/scipy/pull/11843`__: MAINT: Simplify
floats in constants.py
* `#11847 https://github.com/scipy/scipy/pull/11847`__: DOC: add a
tutorial of scipy.optimize.linprog
* `#11849 https://github.com/scipy/scipy/pull/11849`__: ENH: speed up
geninvgauss by using cython
* `#11852 https://github.com/scipy/scipy/pull/11852`__: CI: remove osx
from travisCI
* `#11857 https://github.com/scipy/scipy/pull/11857`__: BUG: Change
parameter fc of gausspulse to float.
* `#11861 https://github.com/scipy/scipy/pull/11861`__: order = degree +
1 for splines
* `#11863 https://github.com/scipy/scipy/pull/11863`__: Make g77 ABI
wrapper work with gfortran ABI lapack
* `#11866 https://github.com/scipy/scipy/pull/11866`__: MAINT: add type
ignores to sympy and matplotlib imports
* `#11867 https://github.com/scipy/scipy/pull/11867`__: CI: Add arm64 in
travis-ci
* `#11869 https://github.com/scipy/scipy/pull/11869`__: DOC: signal: Add
an example to the lsim2 docstring.
* `#11870 https://github.com/scipy/scipy/pull/11870`__: DOC: signal: Use
impulse instead of impulse2 in the impulse example...
* `#11871 https://github.com/scipy/scipy/pull/11871`__: ENH: type ufuncs
in special as ufuncs instead of Any
* `#11872 https://github.com/scipy/scipy/pull/11872`__: BUG: avoid
recomputing in scipy.optimize.optimize.MemoizeJac
* `#11873 https://github.com/scipy/scipy/pull/11873`__: DOC: signal: Fix
ODE in impulse and impulse2 docstrings.
* `#11874 https://github.com/scipy/scipy/pull/11874`__: DOC: add Examples
of docstring for scipy.interpolate.approximate_taylor_polynomial
* `#11878 https://github.com/scipy/scipy/pull/11878`__: DOC: fixed a typo
under scipy/integrate/quadrature.py
* `#11879 https://github.com/scipy/scipy/pull/11879`__: BUG: Fix index
arrays overflow in sparse.kron
* `#11880 https://github.com/scipy/scipy/pull/11880`__: DOC: stats: Add
Examples for bartlett, fligner, levene.
* `#11881 https://github.com/scipy/scipy/pull/11881`__: MAINT: normalise
numpy-->np in optimize.py
* `#11882 https://github.com/scipy/scipy/pull/11882`__: DOC: add Examples
for scipy.io.readsav docstring.
* `#11883 https://github.com/scipy/scipy/pull/11883`__: DOC: add Returns
and Examples for scipy.ndimage.correlate() docstring
* `#11885 https://github.com/scipy/scipy/pull/11885`__: BUG: stats:
Handle multidimensional arrays in f_oneway, and more.
* `#11889 https://github.com/scipy/scipy/pull/11889`__: DOC: signal:
Unify lsim and lsim2 examples.
* `#11896 https://github.com/scipy/scipy/pull/11896`__: BUG: stats: Fix
handling of size 0 inputs for ttest_rel and ttest_ind.
* `#11897 https://github.com/scipy/scipy/pull/11897`__: DOC: Remove
misleading default values from fit method
* `#11898 https://github.com/scipy/scipy/pull/11898`__: MAINT:
LinearVectorFunction.J is ndarray closes #11886
* `#11902 https://github.com/scipy/scipy/pull/11902`__: BUG: linalg:
test_heequb failure
* `#11904 https://github.com/scipy/scipy/pull/11904`__: fix real-to-real
transforms for complex inputs and overwrite_x=True
* `#11906 https://github.com/scipy/scipy/pull/11906`__: DOC: stats: fix
error caused by trapz docstring
* `#11907 https://github.com/scipy/scipy/pull/11907`__: BUG: stats: fixed
SEGFAULT from Issue #9710
* `#11912 https://github.com/scipy/scipy/pull/11912`__: ENH: Respect
matplotlib color palette with hierarchy/dendrogram.
* `#11914 https://github.com/scipy/scipy/pull/11914`__: DOC: refine doc
for spatial.distance.squareform
* `#11915 https://github.com/scipy/scipy/pull/11915`__: ENH: Ndim linear
operator
* `#11919 https://github.com/scipy/scipy/pull/11919`__: ENH: expose
"window_size" parameter in find_peaks_cwt()
* `#11920 https://github.com/scipy/scipy/pull/11920`__: DOC: explain M,
diffev
* `#11923 https://github.com/scipy/scipy/pull/11923`__: CI: macOS install
swig closes #11922
* `#11924 https://github.com/scipy/scipy/pull/11924`__: DOC: add Examples
for scipy.optimize.bracket() docstring
* `#11930 https://github.com/scipy/scipy/pull/11930`__: DOC: add Examples
and clean up for signal.qspline1d and signal.qspline_eval...
* `#11931 https://github.com/scipy/scipy/pull/11931`__: DOC: add Examples
for sparse.linalg.bicg docstring.
* `#11933 https://github.com/scipy/scipy/pull/11933`__: DOC: Add original
reference for Yao-Liu objective functions
* `#11934 https://github.com/scipy/scipy/pull/11934`__: DOC, MAINT:
mailmap update
* `#11935 https://github.com/scipy/scipy/pull/11935`__: DOC: make
scipy.stats.mode documentation reflect that the function...
* `#11936 https://github.com/scipy/scipy/pull/11936`__: ENH: special: add
type stubs for \`orthogonal.py\`
* `#11937 https://github.com/scipy/scipy/pull/11937`__: DOC: Add
docstring examples to fft2, ifft2, io.savemat
* `#11938 https://github.com/scipy/scipy/pull/11938`__: MAINT: add helper
function for deprecating Cython API functions
* `#11942 https://github.com/scipy/scipy/pull/11942`__: MAINT: ignore
conditional import in _lib/_util
* `#11943 https://github.com/scipy/scipy/pull/11943`__: MAINT: special:
add types for geterr/seterr/errstate
* `#11946 https://github.com/scipy/scipy/pull/11946`__: MAINT: add
py.typed marker
* `#11950 https://github.com/scipy/scipy/pull/11950`__: TST:MAINT:
separated and stabilized heequb tests
* `#11952 https://github.com/scipy/scipy/pull/11952`__: DOC: update
toolchain roadmap for py38, C99, C++11/14
* `#11957 https://github.com/scipy/scipy/pull/11957`__: MAINT: Use
np.errstate context manager instead of np.seterr.
* `#11958 https://github.com/scipy/scipy/pull/11958`__: MAINT:
interpolate: Remove some trailing spaces.
* `#11960 https://github.com/scipy/scipy/pull/11960`__: MAINT: Cleanup
Python2 compatibility code
* `#11961 https://github.com/scipy/scipy/pull/11961`__: MAINT: Remove
numpy/npy_3kcompat.h from _superluobject.c
* `#11962 https://github.com/scipy/scipy/pull/11962`__: DOC: Fix type of
\`codes\` in docstring of \`_vq._vq()\`
* `#11964 https://github.com/scipy/scipy/pull/11964`__: MAINT: Cleanup
unused IS_PYPY
* `#11969 https://github.com/scipy/scipy/pull/11969`__: DOC: add Examples
and fix docstring for special.airye
* `#11970 https://github.com/scipy/scipy/pull/11970`__: BUG: sparse:
'diagonal' of sparse matrices fixed to match numpy's...
* `#11974 https://github.com/scipy/scipy/pull/11974`__: BUG: Reshape
oaconvolve output even when no axes are convolved
* `#11976 https://github.com/scipy/scipy/pull/11976`__: MAINT: add logo
for github actions
* `#11977 https://github.com/scipy/scipy/pull/11977`__: CI: test bleeding
edge Python
* `#11979 https://github.com/scipy/scipy/pull/11979`__: DOC: add Examples
for stats.ranksums() docstring.
* `#11982 https://github.com/scipy/scipy/pull/11982`__: Fix KMeans++
initialisation slowness
* `#11983 https://github.com/scipy/scipy/pull/11983`__: DOC: add Examples
for stats.mstats.argstoarray() docstring.
* `#11986 https://github.com/scipy/scipy/pull/11986`__: Avoid bugs in
ndimage when the output and input arrays overlap...
* `#11988 https://github.com/scipy/scipy/pull/11988`__: ENH: Override fit
method of Laplace distribution with Maximum...
* `#11993 https://github.com/scipy/scipy/pull/11993`__: TST, CI: Azure
Windows path fixups
* `#11995 https://github.com/scipy/scipy/pull/11995`__: MAINT, CI: remove
custom mingw Azure
* `#11996 https://github.com/scipy/scipy/pull/11996`__: DOC: add Examples
and fix pep warning for fft.set_global_backend...
* `#11997 https://github.com/scipy/scipy/pull/11997`__: MAINT, CI: Azure
OpenBLAS simplify
* `#11998 https://github.com/scipy/scipy/pull/11998`__: BENCH: Run
against current HEAD instead of master
* `#12001 https://github.com/scipy/scipy/pull/12001`__: ENH: stats:
Implement _logpdf for the maxwell distribution.
* `#12004 https://github.com/scipy/scipy/pull/12004`__: DOC: add examples
for integrate.quad_vec() and integrate.quad_explain()
* `#12005 https://github.com/scipy/scipy/pull/12005`__: MAINT: Use helper
functions in ?tbtrs tests
* `#12007 https://github.com/scipy/scipy/pull/12007`__: MAINT: updated
LICENSES_bundled for pybind11 and six
* `#12008 https://github.com/scipy/scipy/pull/12008`__: DOC: roadmap
update
* `#12009 https://github.com/scipy/scipy/pull/12009`__: ENH: optimize:
support 64-bit BLAS in lbfgsb
* `#12010 https://github.com/scipy/scipy/pull/12010`__: ENH:
sparse.linalg: support 64-bit BLAS in isolve
* `#12012 https://github.com/scipy/scipy/pull/12012`__: DOC: add Examples
for interpolate.barycentric_interpolate(),...
* `#12013 https://github.com/scipy/scipy/pull/12013`__: MAINT: remove
last uses of numpy.dual
* `#12014 https://github.com/scipy/scipy/pull/12014`__: CI: print 10
slowest tests
* `#12020 https://github.com/scipy/scipy/pull/12020`__: MAINT: Removed
handling of circular input in SphericalVoronoi
* `#12022 https://github.com/scipy/scipy/pull/12022`__: DOC : added
default value of absolute_sigma to False in scipy.optimize.curve_fit docs
* `#12024 https://github.com/scipy/scipy/pull/12024`__: DOC: add Examples
for io.hb_read() and io.hb_write()
* `#12025 https://github.com/scipy/scipy/pull/12025`__: MAINT: Remove
numpy/npy_3kcompat.h from nd_image
* `#12028 https://github.com/scipy/scipy/pull/12028`__: Spelling
correction
* `#12030 https://github.com/scipy/scipy/pull/12030`__: ENH:
optimize/_trlib: support ILP64 blas/lapack
* `#12036 https://github.com/scipy/scipy/pull/12036`__: MAINT: Add some
generated C files .gitignore
* `#12038 https://github.com/scipy/scipy/pull/12038`__: MAINT, CI: Travis
rackcdn->conda.org
* `#12039 https://github.com/scipy/scipy/pull/12039`__: MAINT: signal:
Lower the resolution of the plots in the chirp...
* `#12040 https://github.com/scipy/scipy/pull/12040`__: DOC: add Examples
for ndimage.spline_filter1d() and spline_filter()...
* `#12044 https://github.com/scipy/scipy/pull/12044`__: MAINT: combine
apt-get update and apt-get install into one RUN
* `#12045 https://github.com/scipy/scipy/pull/12045`__: TST: Reduce size
of test_diagonal_types to speed up tests
* `#12046 https://github.com/scipy/scipy/pull/12046`__: MAINT: Remove
unused npy_3kcompat.h
* `#12047 https://github.com/scipy/scipy/pull/12047`__: MAINT: Cython 3.0
compat
* `#12050 https://github.com/scipy/scipy/pull/12050`__: DOC: add download
number badges of PyPI and conda-forge in README.rst
* `#12052 https://github.com/scipy/scipy/pull/12052`__: DOC: add Examples
odr.models.polynomial() and fix odr.odr docstring...
* `#12056 https://github.com/scipy/scipy/pull/12056`__: ENH: Modifies
shapiro to return a named tuple
* `#12057 https://github.com/scipy/scipy/pull/12057`__: Adding my name
into THANKS.txt
* `#12060 https://github.com/scipy/scipy/pull/12060`__: TST: Reduce
number of test_diagonal_types configs
* `#12062 https://github.com/scipy/scipy/pull/12062`__: TST: Change
dec.slow to pytest.mark.slow
* `#12068 https://github.com/scipy/scipy/pull/12068`__: ENH: Modifies
jarque_bera to return a named tuple
* `#12070 https://github.com/scipy/scipy/pull/12070`__: MAINT, CI:
appveyor rack->conda.org
* `#12072 https://github.com/scipy/scipy/pull/12072`__: TST: filter out
factorial(float) deprecation warning
* `#12078 https://github.com/scipy/scipy/pull/12078`__: TST: Skip test on
colab with large memory alloc
* `#12079 https://github.com/scipy/scipy/pull/12079`__: DOC: Remove
Python2 reference from stats tutorial
* `#12081 https://github.com/scipy/scipy/pull/12081`__: DOC: add Examples
docstring for optimize.show_options()
* `#12084 https://github.com/scipy/scipy/pull/12084`__: BUG: interpolate:
fix BarycentricInterpolator with integer input...
* `#12089 https://github.com/scipy/scipy/pull/12089`__: ENH:
spatial/qhull: support ILP64 Lapack
* `#12090 https://github.com/scipy/scipy/pull/12090`__: ENH: integrate:
support ILP64 BLAS in odeint/vode/lsoda
* `#12091 https://github.com/scipy/scipy/pull/12091`__: ENH: integrate:
support ILP64 in quadpack
* `#12092 https://github.com/scipy/scipy/pull/12092`__: BUG: Fix dropping
dt in signal.StateSpace
* `#12093 https://github.com/scipy/scipy/pull/12093`__: MAINT: Rollback
python2.6 workaround
* `#12094 https://github.com/scipy/scipy/pull/12094`__: MAINT:
\`openblas_support\` hash checks
* `#12095 https://github.com/scipy/scipy/pull/12095`__: MAINT: ndimage:
change \`shares_memory\` to \`may_share_memory\`
* `#12098 https://github.com/scipy/scipy/pull/12098`__: Doc: change 4
model instances of odr to be instances of \`Model\`...
* `#12101 https://github.com/scipy/scipy/pull/12101`__: Removed more
unused imports and assignments.
* `#12107 https://github.com/scipy/scipy/pull/12107`__: ENH: Area
calculation for 2D inputs in SphericalVoronoi
* `#12108 https://github.com/scipy/scipy/pull/12108`__: MAINT: ensure
attributes have correct data type in \`SphericalVoronoi\`
* `#12109 https://github.com/scipy/scipy/pull/12109`__: degree is not
order in splines
* `#12110 https://github.com/scipy/scipy/pull/12110`__: ENH: More
helpful/forgiving io.wavfile errors
* `#12117 https://github.com/scipy/scipy/pull/12117`__: BUG: fix newline
* `#12123 https://github.com/scipy/scipy/pull/12123`__: [MAINT] Fix error
on PyData/Sparse import.
* `#12124 https://github.com/scipy/scipy/pull/12124`__: TST: Always test
matmul now that Python3.5+ is required
* `#12126 https://github.com/scipy/scipy/pull/12126`__: TST: Cleanup
unused matplotlib code.
* `#12127 https://github.com/scipy/scipy/pull/12127`__: DOC: update
docstrings of signal.cspline2d, qspline2d, sepfir2d
* `#12130 https://github.com/scipy/scipy/pull/12130`__: MAINT: Fixing
broken links with linkchecker
* `#12135 https://github.com/scipy/scipy/pull/12135`__: ENH: linalg: Add
the function convolution_matrix.
* `#12136 https://github.com/scipy/scipy/pull/12136`__: MAINT: Cleanup
np.poly1d hack
* `#12137 https://github.com/scipy/scipy/pull/12137`__: TST, CI:
reproduce wheels 32-bit setup
* `#12140 https://github.com/scipy/scipy/pull/12140`__: TST: stats: add
kstwo, ksone to slow tests.
* `#12141 https://github.com/scipy/scipy/pull/12141`__: Support 64-bit
integer size in Fitpack
* `#12151 https://github.com/scipy/scipy/pull/12151`__: DOC: Correct
Rosenbrock function sum
* `#12159 https://github.com/scipy/scipy/pull/12159`__: BUG: Fix length
calculation in upfirdn
* `#12160 https://github.com/scipy/scipy/pull/12160`__: BUG: Fix M_PI
* `#12168 https://github.com/scipy/scipy/pull/12168`__: DOC: add an
obsolete version checking javascript to doc release...
* `#12171 https://github.com/scipy/scipy/pull/12171`__: CI, MAINT: Azure
OpenBLAS drive flip
* `#12172 https://github.com/scipy/scipy/pull/12172`__: ENH: Bounds for
the Powell minimization method
* `#12175 https://github.com/scipy/scipy/pull/12175`__: BLD: support more
Fortran compilers for ilp64 and macro expansion...
* `#12179 https://github.com/scipy/scipy/pull/12179`__: BUG: stats: A few
distributions didn't accept lists as arguments.
* `#12180 https://github.com/scipy/scipy/pull/12180`__: MAINT: removed
redundant import in SphericalVoronoi tests
* `#12181 https://github.com/scipy/scipy/pull/12181`__: DOC: for
versionwarning don't use $.getScript
* `#12182 https://github.com/scipy/scipy/pull/12182`__: MAINT: random
sampling on the hypersphere in SphericalVoronoi...
* `#12194 https://github.com/scipy/scipy/pull/12194`__: MAINT: Module and
example cleanups for doc build
* `#12202 https://github.com/scipy/scipy/pull/12202`__: ENH: tool to DL
release wheels from Anaconda
* `#12210 https://github.com/scipy/scipy/pull/12210`__: Remove py.typed
marker (at least for the release)
* `#12217 https://github.com/scipy/scipy/pull/12217`__: BUG: stats: Fix
handling of edge cases in median_abs_deviation.
* `#12223 https://github.com/scipy/scipy/pull/12223`__: BUG: stats:
wilcoxon returned p > 1 for certain inputs.
* `#12227 https://github.com/scipy/scipy/pull/12227`__: BLD: Set macos
min version when building rectangular_lsap
* `#12229 https://github.com/scipy/scipy/pull/12229`__: MAINT:
tools/gh_lists.py: fix http header case sensitivity issue
* `#12236 https://github.com/scipy/scipy/pull/12236`__: DOC: Fix a couple
grammatical mistakes in 1.5.0-notes.rst.
* `#12276 https://github.com/scipy/scipy/pull/12276`__: TST: skip
`test_heequb`, it fails intermittently.
* `#12285 https://github.com/scipy/scipy/pull/12285`__: CI: split travis
arm64 run into two
* `#12317 https://github.com/scipy/scipy/pull/12317`__: BUG: prevent
error accumulation in `Rotation` multiplication
* `#12318 https://github.com/scipy/scipy/pull/12318`__: BUG: sparse:
avoid np.prod overflow in check_shape
* `#12319 https://github.com/scipy/scipy/pull/12319`__: BUG: Make cobyla
threadsafe
* `#12335 https://github.com/scipy/scipy/pull/12335`__: MAINT: Work
around Sphinx bug
Checksums
=========
MD5
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