On Fri, Mar 16, 2012 at 1:44 AM, Ralf Gommers <ralf.gommers@googlemail.com>wrote:

On Fri, Mar 16, 2012 at 12:45 AM, Charles R Harris < charlesr.harris@gmail.com> wrote:

...

On my machines anyway.

Running from numpy source directory. non-existing path in 'numpy/distutils': 'site.cfg' F2PY Version 2 numpy/core/setup_common.py:86: MismatchCAPIWarning: API mismatch detected, the C API version numbers have to be updated. Current C api version is 6, with checksum eb54c77ff4149bab310324cd7c0cb176, but recorded checksum for C API version 6 in codegen_dir/cversions.txt is e61d5dc51fa1c6459328266e215d6987. If functions were added in the C API, you have to update C_API_VERSION in numpy/core/setup_common.pyc. MismatchCAPIWarning) blas_opt_info: blas_mkl_info: libraries mkl,vml,guide not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib'] NOT AVAILABLE

atlas_blas_threads_info: Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS Traceback (most recent call last): File "setup.py", line 214, in <module> setup_package() File "setup.py", line 207, in setup_package configuration=configuration ) File "/home/charris/Workspace/numpy.git/numpy/distutils/core.py", line 152, in setup config = configuration() File "setup.py", line 147, in configuration config.add_subpackage('numpy') File "/home/charris/Workspace/numpy.git/numpy/distutils/misc_util.py", line 1002, in add_subpackage caller_level = 2) File "/home/charris/Workspace/numpy.git/numpy/distutils/misc_util.py", line 971, in get_subpackage caller_level = caller_level + 1) File "/home/charris/Workspace/numpy.git/numpy/distutils/misc_util.py", line 908, in _get_configuration_from_setup_py config = setup_module.configuration(*args) File "numpy/setup.py", line 9, in configuration config.add_subpackage('core') File "/home/charris/Workspace/numpy.git/numpy/distutils/misc_util.py", line 1002, in add_subpackage caller_level = 2) File "/home/charris/Workspace/numpy.git/numpy/distutils/misc_util.py", line 971, in get_subpackage caller_level = caller_level + 1) File "/home/charris/Workspace/numpy.git/numpy/distutils/misc_util.py", line 908, in _get_configuration_from_setup_py config = setup_module.configuration(*args) File "numpy/core/setup.py", line 901, in configuration blas_info = get_info('blas_opt',0) File "/home/charris/Workspace/numpy.git/numpy/distutils/system_info.py", line 325, in get_info return cl().get_info(notfound_action) File "/home/charris/Workspace/numpy.git/numpy/distutils/system_info.py", line 478, in get_info self.calc_info() File "/home/charris/Workspace/numpy.git/numpy/distutils/system_info.py", line 1465, in calc_info atlas_info = get_info('atlas_blas_threads') File "/home/charris/Workspace/numpy.git/numpy/distutils/system_info.py", line 325, in get_info return cl().get_info(notfound_action) File "/home/charris/Workspace/numpy.git/numpy/distutils/system_info.py", line 478, in get_info self.calc_info() File "/home/charris/Workspace/numpy.git/numpy/distutils/system_info.py numpy/distutils/system_info.py", line 1090, in calc_info dict_append(atlas, **atlas_extra_info) NameError: global name 'atlas_extra_info' is not defined

Commenting out line 1090 in numpy/distutils/system_info.py fixes the problem, but I'm pretty sure that isn't the right fix.

Does it work when you add: atlas_version, atlas_extra_info = get_atlas_version(**atlas) on line 1090?

I thought the testing was extensive enough (we did 3 machines, different OSes and site.cfg's), but apparently not. Sorry about that.

That fixes the problem for me. Chuck