Hi all, On behalf of the SciPy development team I'm pleased to announce the release of SciPy 1.7.0. Sources and binary wheels can be found at: https://pypi.org/project/scipy/ and at: https://github.com/scipy/scipy/releases/tag/v1.7.0 One of a few ways to install this release with pip: pip install scipy==1.7.0 ===================== SciPy 1.7.0 Release Notes ===================== SciPy 1.7.0 is the culmination of 6 months of hard work. It contains many new features, numerous bug-fixes, improved test coverage and better documentation. There have been a number of deprecations and API changes in this release, which are documented below. All users are encouraged to upgrade to this release, as there are a large number of bug-fixes and optimizations. Before upgrading, we recommend that users check that their own code does not use deprecated SciPy functionality (to do so, run your code with ``python -Wd`` and check for ``DeprecationWarning`` s). Our development attention will now shift to bug-fix releases on the 1.7.x branch, and on adding new features on the master branch. This release requires Python 3.7+ and NumPy 1.16.5 or greater. For running on PyPy, PyPy3 6.0+ is required. **************************** Highlights of this release **************************** - A new submodule for quasi-Monte Carlo, `scipy.stats.qmc`, was added - The documentation design was updated to use the same PyData-Sphinx theme as NumPy and other ecosystem libraries. - We now vendor and leverage the Boost C++ library to enable numerous improvements for long-standing weaknesses in `scipy.stats` - `scipy.stats` has six new distributions, eight new (or overhauled) hypothesis tests, a new function for bootstrapping, a class that enables fast random variate sampling and percentile point function evaluation, and many other enhancements. - ``cdist`` and ``pdist`` distance calculations are faster for several metrics, especially weighted cases, thanks to a rewrite to a new C++ backend framework - A new class for radial basis function interpolation, `RBFInterpolator`, was added to address issues with the `Rbf` class. We gratefully acknowledge the Chan-Zuckerberg Initiative Essential Open Source Software for Science program for supporting many of the improvements to `scipy.stats`. *************** New features *************** `scipy.cluster` improvements ====================== An optional argument, ``seed``, has been added to ``kmeans`` and ``kmeans2`` to set the random generator and random state. `scipy.interpolate` improvements ========================= Improved input validation and error messages for ``fitpack.bispev`` and ``fitpack.parder`` for scenarios that previously caused substantial confusion for users. The class `RBFInterpolator` was added to supersede the `Rbf` class. The new class has usage that more closely follows other interpolator classes, corrects sign errors that caused unexpected smoothing behavior, includes polynomial terms in the interpolant (which are necessary for some RBF choices), and supports interpolation using only the k-nearest neighbors for memory efficiency. `scipy.linalg` improvements ===================== An LAPACK wrapper was added for access to the ``tgexc`` subroutine. `scipy.ndimage` improvements ======================= `scipy.ndimage.affine_transform` is now able to infer the ``output_shape`` from the ``out`` array. `scipy.optimize` improvements ======================= The optional parameter ``bounds`` was added to ``_minimize_neldermead`` to support bounds constraints for the Nelder-Mead solver. ``trustregion`` methods ``trust-krylov``, ``dogleg`` and ``trust-ncg`` can now estimate ``hess`` by finite difference using one of ``["2-point", "3-point", "cs"]``. ``halton`` was added as a ``sampling_method`` in `scipy.optimize.shgo`. ``sobol`` was fixed and is now using `scipy.stats.qmc.Sobol`. ``halton`` and ``sobol`` were added as ``init`` methods in `scipy.optimize.differential_evolution.` ``differential_evolution`` now accepts an ``x0`` parameter to provide an initial guess for the minimization. ``least_squares`` has a modest performance improvement when SciPy is built with Pythran transpiler enabled. When ``linprog`` is used with ``method`` ``'highs'``, ``'highs-ipm'``, or ``'highs-ds'``, the result object now reports the marginals (AKA shadow prices, dual values) and residuals associated with each constraint. `scipy.signal` improvements ===================== ``get_window`` supports ``general_cosine`` and ``general_hamming`` window functions. `scipy.signal.medfilt2d` now releases the GIL where appropriate to enable performance gains via multithreaded calculations. `scipy.sparse` improvements ====================== Addition of ``dia_matrix`` sparse matrices is now faster. `scipy.spatial` improvements ====================== ``distance.cdist`` and ``distance.pdist`` performance has greatly improved for certain weighted metrics. Namely: ``minkowski``, ``euclidean``, ``chebyshev``, ``canberra``, and ``cityblock``. Modest performance improvements for many of the unweighted ``cdist`` and ``pdist`` metrics noted above. The parameter ``seed`` was added to `scipy.spatial.vq.kmeans` and `scipy.spatial.vq.kmeans2`. The parameters ``axis`` and ``keepdims`` where added to `scipy.spatial.distance.jensenshannon`. The ``rotation`` methods ``from_rotvec`` and ``as_rotvec`` now accept a ``degrees`` argument to specify usage of degrees instead of radians. `scipy.special` improvements ====================== Wright's generalized Bessel function for positive arguments was added as `scipy.special.wright_bessel.` An implementation of the inverse of the Log CDF of the Normal Distribution is now available via `scipy.special.ndtri_exp`. `scipy.stats` improvements ==================== Hypothesis Tests ----------------------- The Mann-Whitney-Wilcoxon test, ``mannwhitneyu``, has been rewritten. It now supports n-dimensional input, an exact test method when there are no ties, and improved documentation. Please see "Other changes" for adjustments to default behavior. The new function `scipy.stats.binomtest` replaces `scipy.stats.binom_test`. The new function returns an object that calculates a confidence intervals of the proportion parameter. Also, performance was improved from O(n) to O(log(n)) by using binary search. The two-sample version of the Cramer-von Mises test is implemented in `scipy.stats.cramervonmises_2samp`. The Alexander-Govern test is implemented in the new function `scipy.stats.alexandergovern`. The new functions `scipy.stats.barnard_exact` and `scipy.stats. boschloo_exact` respectively perform Barnard's exact test and Boschloo's exact test for 2x2 contingency tables. The new function `scipy.stats.page_trend_test` performs Page's test for ordered alternatives. The new function `scipy.stats.somersd` performs Somers' D test for ordinal association between two variables. An option, ``permutations``, has been added in `scipy.stats.ttest_ind` to perform permutation t-tests. A ``trim`` option was also added to perform a trimmed (Yuen's) t-test. The ``alternative`` parameter was added to the ``skewtest``, ``kurtosistest``, ``ranksums``, ``mood``, ``ansari``, ``linregress``, and ``spearmanr`` functions to allow one-sided hypothesis testing. Sample statistics ----------------------- The new function `scipy.stats.differential_entropy` estimates the differential entropy of a continuous distribution from a sample. The ``boxcox`` and ``boxcox_normmax`` now allow the user to control the optimizer used to minimize the negative log-likelihood function. A new function `scipy.stats.contingency.relative_risk` calculates the relative risk, or risk ratio, of a 2x2 contingency table. The object returned has a method to compute the confidence interval of the relative risk. Performance improvements in the ``skew`` and ``kurtosis`` functions achieved by removal of repeated/redundant calculations. Substantial performance improvements in `scipy.stats.mstats.hdquantiles_sd`. The new function `scipy.stats.contingency.association` computes several measures of association for a contingency table: Pearsons contingency coefficient, Cramer's V, and Tschuprow's T. The parameter ``nan_policy`` was added to `scipy.stats.zmap` to provide options for handling the occurrence of ``nan`` in the input data. The parameter ``ddof`` was added to `scipy.stats.variation` and `scipy.stats.mstats.variation`. The parameter ``weights`` was added to `scipy.stats.gmean`. Statistical Distributions ------------------------------- We now vendor and leverage the Boost C++ library to address a number of previously reported issues in ``stats``. Notably, ``beta``, ``binom``, ``nbinom`` now have Boost backends, and it is straightforward to leverage the backend for additional functions. The skew Cauchy probability distribution has been implemented as `scipy.stats.skewcauchy`. The Zipfian probability distribution has been implemented as `scipy.stats.zipfian`. The new distributions ``nchypergeom_fisher`` and ``nchypergeom_wallenius`` implement the Fisher and Wallenius versions of the noncentral hypergeometric distribution, respectively. The generalized hyperbolic distribution was added in `scipy.stats.genhyperbolic`. The studentized range distribution was added in `scipy.stats.studentized_range`. `scipy.stats.argus` now has improved handling for small parameter values. Better argument handling/preparation has resulted in performance improvements for many distributions. The ``cosine`` distribution has added ufuncs for ``ppf``, ``cdf``, ``sf``, and ``isf`` methods including numerical precision improvements at the edges of the support of the distribution. An option to fit the distribution to data by the method of moments has been added to the ``fit`` method of the univariate continuous distributions. Other --------- `scipy.stats.bootstrap` has been added to allow estimation of the confidence interval and standard error of a statistic. The new function `scipy.stats.contingency.crosstab` computes a contingency table (i.e. a table of counts of unique entries) for the given data. `scipy.stats.NumericalInverseHermite` enables fast random variate sampling and percentile point function evaluation of an arbitrary univariate statistical distribution. New `scipy.stats.qmc` module ----------------------------------------- This new module provides Quasi-Monte Carlo (QMC) generators and associated helper functions. It provides a generic class `scipy.stats.qmc.QMCEngine` which defines a QMC engine/sampler. An engine is state aware: it can be continued, advanced and reset. 3 base samplers are available: - `scipy.stats.qmc.Sobol` the well known Sobol low discrepancy sequence. Several warnings have been added to guide the user into properly using this sampler. The sequence is scrambled by default. - `scipy.stats.qmc.Halton`: Halton low discrepancy sequence. The sequence is scrambled by default. - `scipy.stats.qmc.LatinHypercube`: plain LHS design. And 2 special samplers are available: - `scipy.stats.qmc.MultinomialQMC`: sampling from a multinomial distribution using any of the base `scipy.stats.qmc.QMCEngine`. - `scipy.stats.qmc.MultivariateNormalQMC`: sampling from a multivariate Normal using any of the base `scipy.stats.qmc.QMCEngine`. The module also provide the following helpers: - `scipy.stats.qmc.discrepancy`: assess the quality of a set of points in terms of space coverage. - `scipy.stats.qmc.update_discrepancy`: can be used in an optimization loop to construct a good set of points. - `scipy.stats.qmc.scale`: easily scale a set of points from (to) the unit interval to (from) a given range. *********************** Deprecated features *********************** `scipy.linalg` deprecations ==================== - `scipy.linalg.pinv2` is deprecated and its functionality is completely subsumed into `scipy.linalg.pinv` - Both ``rcond``, ``cond`` keywords of `scipy.linalg.pinv` and `scipy.linalg.pinvh` were not working and now are deprecated. They are now replaced with functioning ``atol`` and ``rtol`` keywords with clear usage. `scipy.spatial` deprecations ===================== - `scipy.spatial.distance` metrics expect 1d input vectors but will call ``np.squeeze`` on their inputs to accept any extra length-1 dimensions. That behaviour is now deprecated. ***************** Other changes ***************** We now accept and leverage performance improvements from the ahead-of-time Python-to-C++ transpiler, Pythran, which can be optionally disabled (via ``export SCIPY_USE_PYTHRAN=0``) but is enabled by default at build time. There are two changes to the default behavior of `scipy.stats.mannwhitenyu`: - For years, use of the default ``alternative=None`` was deprecated; explicit ``alternative`` specification was required. Use of the new default value of ``alternative``, "two-sided", is now permitted. - Previously, all p-values were based on an asymptotic approximation. Now, for small samples without ties, the p-values returned are exact by default. Support has been added for PEP 621 (project metadata in ``pyproject.toml``) We now support a Gitpod environment to reduce the barrier to entry for SciPy development; for more details see :ref:`quickstart-gitpod`. ********* Authors ********* * @endolith * Jelle Aalbers + * Adam + * Tania Allard + * Sven Baars + * Max Balandat + * baumgarc + * Christoph Baumgarten * Peter Bell * Lilian Besson * Robinson Besson + * Max Bolingbroke * Blair Bonnett + * Jordão Bragantini * Harm Buisman + * Evgeni Burovski * Matthias Bussonnier * Dominic C * CJ Carey * Ramón Casero + * Chachay + * charlotte12l + * Benjamin Curtice Corbett + * Falcon Dai + * Ian Dall + * Terry Davis * droussea2001 + * DWesl + * dwight200 + * Thomas J. Fan + * Joseph Fox-Rabinovitz * Max Frei + * Laura Gutierrez Funderburk + * gbonomib + * Matthias Geier + * Pradipta Ghosh + * Ralf Gommers * Evan H + * h-vetinari * Matt Haberland * Anselm Hahn + * Alex Henrie * Piet Hessenius + * Trever Hines + * Elisha Hollander + * Stephan Hoyer * Tom Hu + * Kei Ishikawa + * Julien Jerphanion * Robert Kern * Shashank KS + * Peter Mahler Larsen * Eric Larson * Cheng H. Lee + * Gregory R. Lee * Jean-Benoist Leger + * lgfunderburk + * liam-o-marsh + * Xingyu Liu + * Alex Loftus + * Christian Lorentzen + * Cong Ma * Marc + * MarkPundurs + * Markus Löning + * Liam Marsh + * Nicholas McKibben * melissawm + * Jamie Morton * Andrew Nelson * Nikola Forró * Tor Nordam + * Olivier Gauthé + * Rohit Pandey + * Avanindra Kumar Pandeya + * Tirth Patel * paugier + * Alex H. Wagner, PhD + * Jeff Plourde + * Ilhan Polat * pranavrajpal + * Vladyslav Rachek * Bharat Raghunathan * Recursing + * Tyler Reddy * Lucas Roberts * Gregor Robinson + * Pamphile Roy + * Atsushi Sakai * Benjamin Santos * Martin K. Scherer + * Thomas Schmelzer + * Daniel Scott + * Sebastian Wallkötter + * serge-sans-paille + * Namami Shanker + * Masashi Shibata + * Alexandre de Siqueira + * Albert Steppi + * Adam J. Stewart + * Kai Striega * Diana Sukhoverkhova * Søren Fuglede Jørgensen * Mike Taves * Dan Temkin + * Nicolas Tessore + * tsubota20 + * Robert Uhl * christos val + * Bas van Beek + * Ashutosh Varma + * Jose Vazquez + * Sebastiano Vigna * Aditya Vijaykumar * VNMabus * Arthur Volant + * Samuel Wallan * Stefan van der Walt * Warren Weckesser * Anreas Weh * Josh Wilson * Rory Yorke * Egor Zemlyanoy * Marc Zoeller + * zoj613 + * 秋纫 + A total of 126 people contributed to this release. People with a "+" by their names contributed a patch for the first time. This list of names is automatically generated, and may not be fully complete. ************************** Issues closed for 1.7.0 ************************** * `#636 https://github.com/scipy/scipy/issues/636`__: Statistics Review: mannwhitneyu (Trac #109) * `#1346 https://github.com/scipy/scipy/issues/1346`__: signal.medfilt2d should fall back on signal.medfilt for types... * `#2118 https://github.com/scipy/scipy/issues/2118`__: Mann-Whitney statistic returns incorrect results (Trac #1593) * `#2158 https://github.com/scipy/scipy/issues/2158`__: special.chndtrix (ncx2.ppf) gives wrong results (Trac #1633) * `#3284 https://github.com/scipy/scipy/issues/3284`__: build_sphinx weirdness * `#3352 https://github.com/scipy/scipy/issues/3352`__: beta distribution sf * `#4067 https://github.com/scipy/scipy/issues/4067`__: Mannwhitneyu with arrays full of nan still reports significance * `#4080 https://github.com/scipy/scipy/issues/4080`__: entropy in Scipy * `#4641 https://github.com/scipy/scipy/issues/4641`__: mstats.mannwhitneyu and stats.mannwhitneyu return inconsistent... * `#5122 https://github.com/scipy/scipy/issues/5122`__: scipy.stats.binom.ppf Incorrect for p=0 * `#5180 https://github.com/scipy/scipy/issues/5180`__: Rbf interpolation - use only K nearest neighbors * `#5258 https://github.com/scipy/scipy/issues/5258`__: affine_transform complains about output_shape when output array... * `#5562 https://github.com/scipy/scipy/issues/5562`__: Wishart degrees of freedom should be $v > p-1$ instead of $v... * `#5933 https://github.com/scipy/scipy/issues/5933`__: mstats_basic.py - mannwhitneyu [scipy/scipy/stats/mstats_basic.py] * `#6409 https://github.com/scipy/scipy/issues/6409`__: _unequal_var_ttest_denom causes ZeroDivisionError in early samples * `#6682 https://github.com/scipy/scipy/issues/6682`__: negative binomial survival function is imprecise * `#6897 https://github.com/scipy/scipy/issues/6897`__: scipy.stats.mannwhitneyu of empty sets gives p=0.0 and does not... * `#7303 https://github.com/scipy/scipy/issues/7303`__: stats.describe with nan_policy=omit returns matrix-wide minmax... * `#7406 https://github.com/scipy/scipy/issues/7406`__: scipy.stats.binom.ppf returns nan for q between 0 and 1 if n... * `#7437 https://github.com/scipy/scipy/issues/7437`__: ENH: add skewed Cauchy distribution to stats * `#7542 https://github.com/scipy/scipy/issues/7542`__: DOC: stats tutorials: Questions on arcsine and Student t formulae * `#7593 https://github.com/scipy/scipy/issues/7593`__: Meaning of \`tol\` argument in \`scipy.optimize.minimize\` is... * `#8565 https://github.com/scipy/scipy/issues/8565`__: Error in SmoothSphereBivariateSpline(): "ValueError: Error code... * `#8665 https://github.com/scipy/scipy/issues/8665`__: \`scipy.ncx2.sf\` should be monotone decreasing * `#8836 https://github.com/scipy/scipy/issues/8836`__: scipy.optimize.linprog(method='simplex') needs to return duals * `#9184 https://github.com/scipy/scipy/issues/9184`__: Mann-Whitney implementation wrong? * `#9450 https://github.com/scipy/scipy/issues/9450`__: allow seeding of init methods in vq.kmeans2 * `#9704 https://github.com/scipy/scipy/issues/9704`__: RectSphereBivariateSpline fails for negative longitude * `#9836 https://github.com/scipy/scipy/issues/9836`__: scipy.stats.rice gives incorrect results when s is very low compared... * `#9904 https://github.com/scipy/scipy/issues/9904`__: Request/Proposal: Greatly improve scipy.interpolate.Rbf * `#9981 https://github.com/scipy/scipy/issues/9981`__: stats.kruskal : add a warning for an input with 2 or more columns * `#10358 https://github.com/scipy/scipy/issues/10358`__: DOC: linprog and linear_sum_assignment tutorials needed * `#10908 https://github.com/scipy/scipy/issues/10908`__: Nakami fitting doesn't converge (scipy.stats) * `#10933 https://github.com/scipy/scipy/issues/10933`__: Add scaled inverse chi2 distribution * `#11014 https://github.com/scipy/scipy/issues/11014`__: Barnard's Test for More Powerful Hypothesis Testing of 2x2 Contingency... * `#11050 https://github.com/scipy/scipy/issues/11050`__: Feature request: Nelder-Mead with bounds * `#11086 https://github.com/scipy/scipy/issues/11086`__: scipy.stats.skew doesn't work correctly for float point numbers * `#11113 https://github.com/scipy/scipy/issues/11113`__: inconsistent result from ttest_ind and mannwhitneyu when used... * `#11134 https://github.com/scipy/scipy/issues/11134`__: Wrong confidence interval for binomial distribution with p=0 * `#11325 https://github.com/scipy/scipy/issues/11325`__: Add axis parameter for scipy.spatial.distance.jensenshannon * `#11474 https://github.com/scipy/scipy/issues/11474`__: scipy.stats.skellam.cdf(0) returns 0 for large mu1 = mu2 * `#11523 https://github.com/scipy/scipy/issues/11523`__: scipy.stats.zipf doesn't implement zipf distribution * `#11848 https://github.com/scipy/scipy/issues/11848`__: How to get Lagrange / lambda multipliers out of 'linprog' optimize... * `#11909 https://github.com/scipy/scipy/issues/11909`__: Enable bounds for lambda in boxcox * `#12118 https://github.com/scipy/scipy/issues/12118`__: Docstring missing defaults * `#12132 https://github.com/scipy/scipy/issues/12132`__: Slow tests to be trimmed or moved to test('full') * `#12230 https://github.com/scipy/scipy/issues/12230`__: Dendrogram: enable leaves labelling with 'labels' when using... * `#12282 https://github.com/scipy/scipy/issues/12282`__: scipy.stats.chisquare test does not check that observed and expected... * `#12298 https://github.com/scipy/scipy/issues/12298`__: BUG: fmin_powell missing squeeze in 1.5.0rc * `#12403 https://github.com/scipy/scipy/issues/12403`__: Add nan_policy to stats.zmap * `#12518 https://github.com/scipy/scipy/issues/12518`__: Null hypothesis of Kolmogorov Smirnov test is not correctly described * `#12534 https://github.com/scipy/scipy/issues/12534`__: Feature request: scipy.linalg.norm to deal with 0-size array * `#12622 https://github.com/scipy/scipy/issues/12622`__: scipy.interpolate.interpn docstring example * `#12635 https://github.com/scipy/scipy/issues/12635`__: scipy.stats.beta.ppf gives unexpexted results * `#12669 https://github.com/scipy/scipy/issues/12669`__: Median-averaging of complex CSDs * `#12731 https://github.com/scipy/scipy/issues/12731`__: stats.ncx2.cdf fails for nc >> x >> 1 * `#12778 https://github.com/scipy/scipy/issues/12778`__: Confusing documentation of scipy.stats.weightedtau * `#12794 https://github.com/scipy/scipy/issues/12794`__: [Bug] The result of stats.beta.isf is inconsistent with stats.beta.sf * `#12837 https://github.com/scipy/scipy/issues/12837`__: stats.mannwhitneyu could support arrays * `#12868 https://github.com/scipy/scipy/issues/12868`__: Vector-valued interpolation in \`interp2d\` * `#12922 https://github.com/scipy/scipy/issues/12922`__: Minimize with trust-constr method leads to TypeError if option... * `#12929 https://github.com/scipy/scipy/issues/12929`__: The use of starred expressions to create data detracts from understanding... * `#12965 https://github.com/scipy/scipy/issues/12965`__: domain of argument of scipy.interpolate.RectSphereBivariateSpline(u,... * `#13025 https://github.com/scipy/scipy/issues/13025`__: Generalized Hyperbolic Distribution * `#13090 https://github.com/scipy/scipy/issues/13090`__: Broken link in doc for signal.max_len_seq * `#13101 https://github.com/scipy/scipy/issues/13101`__: MAINT: Upgrade python version in docker file * `#13158 https://github.com/scipy/scipy/issues/13158`__: \`signal.get_window()\` has a missing doc link and cannot get... * `#13173 https://github.com/scipy/scipy/issues/13173`__: Uninformative error message from bisplev function * `#13234 https://github.com/scipy/scipy/issues/13234`__: BUG: stats: Wrong shape of burr.moment() and fisk.moment() when... * `#13242 https://github.com/scipy/scipy/issues/13242`__: Does kmeans "drop" clusters? * `#13243 https://github.com/scipy/scipy/issues/13243`__: tgsen uses an output argument for computing a default argument * `#13245 https://github.com/scipy/scipy/issues/13245`__: Kurtosis returning 1 for array of same elements * `#13257 https://github.com/scipy/scipy/issues/13257`__: GitHub Actions test failures for MacOS * `#13272 https://github.com/scipy/scipy/issues/13272`__: scipy.stats.yeojohnson_llf doc mistake * `#13280 https://github.com/scipy/scipy/issues/13280`__: Wrong results with hypergeom cdf * `#13285 https://github.com/scipy/scipy/issues/13285`__: description correction in scipy.stats.t * `#13287 https://github.com/scipy/scipy/issues/13287`__: Generate binomial CDF with mu instead of prob * `#13294 https://github.com/scipy/scipy/issues/13294`__: BUG: stats: wrong bounds returned by 'support' method for distributions... * `#13299 https://github.com/scipy/scipy/issues/13299`__: Typing for scipy.spatial * `#13300 https://github.com/scipy/scipy/issues/13300`__: Add a single individual to a latinhypercube initial population... * `#13311 https://github.com/scipy/scipy/issues/13311`__: MAINT: pavement.py PYVER is outdated * `#13339 https://github.com/scipy/scipy/issues/13339`__: savemat discards dimension information if any dimension is zero * `#13341 https://github.com/scipy/scipy/issues/13341`__: add scipy.stats.variation with an ddof parameter * `#13353 https://github.com/scipy/scipy/issues/13353`__: Documentation: in scipy.stats.johnsonsu, parameter \`a\` can... * `#13405 https://github.com/scipy/scipy/issues/13405`__: TST: add a few tests for sparse BSR ctor * `#13410 https://github.com/scipy/scipy/issues/13410`__: BUG: skew for empty array raises * `#13417 https://github.com/scipy/scipy/issues/13417`__: 10,000 times speedup for generating random numbers from the cosine... * `#13440 https://github.com/scipy/scipy/issues/13440`__: python runtest.py -t path-to-test.py failed * `#13454 https://github.com/scipy/scipy/issues/13454`__: Scipy cosine distance can be greater than 2 * `#13459 https://github.com/scipy/scipy/issues/13459`__: Broken link in cramervonmises documentation * `#13494 https://github.com/scipy/scipy/issues/13494`__: One-word typo in the documentation of optimize.linprog_simplex * `#13501 https://github.com/scipy/scipy/issues/13501`__: minimize using Powell methods with Bounds leads to "TypeError:... * `#13509 https://github.com/scipy/scipy/issues/13509`__: signal.medfilt2d vs ndimage.median_filter * `#13511 https://github.com/scipy/scipy/issues/13511`__: DOC: error in description of "direc" parameter of "fmin_powell" * `#13526 https://github.com/scipy/scipy/issues/13526`__: TST: stats: intermittent \`test_ttest_ind_randperm_alternative2... * `#13536 https://github.com/scipy/scipy/issues/13536`__: \`_within_tolerance\` seems an unnecessary repetition of \`numpy.isclose\` * `#13540 https://github.com/scipy/scipy/issues/13540`__: missing python 3.8 manylinux wheels on scipy-wheels-nightly * `#13559 https://github.com/scipy/scipy/issues/13559`__: shape error in linprog with revised simplex * `#13587 https://github.com/scipy/scipy/issues/13587`__: binned_statistic unreliable with single precision * `#13589 https://github.com/scipy/scipy/issues/13589`__: Better argument preparation for distributions in stats package. * `#13602 https://github.com/scipy/scipy/issues/13602`__: The crystallball distribution entropy is sometimes minus infinity * `#13606 https://github.com/scipy/scipy/issues/13606`__: MAINT: mypy: some typing errors while running mypy + adding mypy... * `#13608 https://github.com/scipy/scipy/issues/13608`__: Why does stats.binned_statistic_2d convert its values argument... * `#13609 https://github.com/scipy/scipy/issues/13609`__: BUG: SciPy pip install -e gets unusable version spec * `#13610 https://github.com/scipy/scipy/issues/13610`__: Highs solver did not provide a solution nor did it report a failure * `#13614 https://github.com/scipy/scipy/issues/13614`__: BUG: invgauss.cdf should return the correct value when \`mu\`... * `#13628 https://github.com/scipy/scipy/issues/13628`__: 1-letter typo in the definition of scipy.special.spence function... * `#13634 https://github.com/scipy/scipy/issues/13634`__: mmwrite fails on dense, skew-symmetric array * `#13646 https://github.com/scipy/scipy/issues/13646`__: Sparse matrix argmax() integer overflow on Windows 10 * `#13647 https://github.com/scipy/scipy/issues/13647`__: \`scipy.stats.qmc.LatinHypercube\` cannot sample single sample... * `#13651 https://github.com/scipy/scipy/issues/13651`__: Documentation wrong in scipy.linalg.eigvalsh * `#13664 https://github.com/scipy/scipy/issues/13664`__: BUG: gamma distribution's inverse survival function overflows... * `#13693 https://github.com/scipy/scipy/issues/13693`__: BUG: sokalmichener appears to incorrectly apply weights * `#13697 https://github.com/scipy/scipy/issues/13697`__: BUG: stats: Spurious warning generated by arcsine.pdf at the... * `#13704 https://github.com/scipy/scipy/issues/13704`__: Make it possible to pass a rank cut-off value relatively to the... * `#13707 https://github.com/scipy/scipy/issues/13707`__: Kullback Leibler Divergence broadcasting no longer works * `#13740 https://github.com/scipy/scipy/issues/13740`__: Scipy.optimize x0 out of bounds when it is within bounds. * `#13744 https://github.com/scipy/scipy/issues/13744`__: scipy.interpolate.interp1d has inconsistent behavior for non-unique... * `#13754 https://github.com/scipy/scipy/issues/13754`__: optimize.minimize 'trust' methods and finite difference Hessian... * `#13762 https://github.com/scipy/scipy/issues/13762`__: MAINT, TST: aarch64 stats test failures showing up in wheels... * `#13769 https://github.com/scipy/scipy/issues/13769`__: probplot draws fit line even when fit=False * `#13791 https://github.com/scipy/scipy/issues/13791`__: BUG: stats: wrapcauchy.cdf does not broadcast the shape parameter... * `#13793 https://github.com/scipy/scipy/issues/13793`__: CI: CircleCI doc build failure * `#13840 https://github.com/scipy/scipy/issues/13840`__: manylinux1 builds are failing because of C99 usage in \`special/_cosine.c\` * `#13850 https://github.com/scipy/scipy/issues/13850`__: CI: Homebrew is failing due to bintray * `#13875 https://github.com/scipy/scipy/issues/13875`__: BUG: chi2_contingency with Yates correction * `#13878 https://github.com/scipy/scipy/issues/13878`__: BUG: \`signal.get_window\` argument handling issue * `#13880 https://github.com/scipy/scipy/issues/13880`__: Remove all usages of numpy.compat * `#13896 https://github.com/scipy/scipy/issues/13896`__: Boschloo's Test for More Powerful Hypothesis Testing of 2x2 Contingency... * `#13923 https://github.com/scipy/scipy/issues/13923`__: Inverse of Log CDF of Normal Distribution * `#13933 https://github.com/scipy/scipy/issues/13933`__: \`signal.get_window\` does not support \`general_cosine\` and... * `#13950 https://github.com/scipy/scipy/issues/13950`__: DOC: scipy.spatial.KDTree.query * `#13969 https://github.com/scipy/scipy/issues/13969`__: N=4 must not exceed M=3 * `#13970 https://github.com/scipy/scipy/issues/13970`__: Pearson's original paper on chi-square test could be referenced. * `#13984 https://github.com/scipy/scipy/issues/13984`__: Faster addition of sparse diagonal matrices * `#13988 https://github.com/scipy/scipy/issues/13988`__: An error occurred when using scipy.io.wavfile of scipy 1.6 version... * `#13997 https://github.com/scipy/scipy/issues/13997`__: BUG: sparse: Incorrect result from \`dia_matrix.diagonal()\` * `#14005 https://github.com/scipy/scipy/issues/14005`__: MAINT: optimize: \`curve_fit\` input error msg can be improved. * `#14038 https://github.com/scipy/scipy/issues/14038`__: MAINT: add type annotations for _sobol.pyx * `#14048 https://github.com/scipy/scipy/issues/14048`__: DOC: missing git submodule information * `#14055 https://github.com/scipy/scipy/issues/14055`__: linalg.solve: Unclear error when using assume_a='her' with real... * `#14093 https://github.com/scipy/scipy/issues/14093`__: DOC: Inconsistency in the definition of default values in the... * `#14158 https://github.com/scipy/scipy/issues/14158`__: TST, BUG: test_rbfinterp.py -- test_interpolation_misfit_1d fails... * `#14170 https://github.com/scipy/scipy/issues/14170`__: TST: signal submodule test_filtfilt_gust failing on 32-bit amd64... * `#14194 https://github.com/scipy/scipy/issues/14194`__: MAINT: download-wheels.py missing import * `#14199 https://github.com/scipy/scipy/issues/14199`__: Generated sources for biasedurn extension are broken in 1.7.0rc1 ************************** Pull requests for 1.7.0 ************************** * `#4824 https://github.com/scipy/scipy/pull/4824`__: Permutation Ttest (new PR) * `#4933 https://github.com/scipy/scipy/pull/4933`__: ENH: Update the Mann-Whitney-Wilcoxon test * `#7702 https://github.com/scipy/scipy/pull/7702`__: ENH: stats: Add Skewed Cauchy Distribution * `#8306 https://github.com/scipy/scipy/pull/8306`__: Optional Pythran support for scipy.signal.max_len_seq_inner * `#10170 https://github.com/scipy/scipy/pull/10170`__: MAINT: stats: Implement cdf and ppf as ufuncs for the cosine... * `#10454 https://github.com/scipy/scipy/pull/10454`__: ENH: Extend find_peaks_cwt to take numbers and iterables for... * `#10844 https://github.com/scipy/scipy/pull/10844`__: ENH: add stats.qmc module with quasi Monte Carlo functionality * `#11313 https://github.com/scipy/scipy/pull/11313`__: ENH: add Wright's generalized Bessel function * `#11352 https://github.com/scipy/scipy/pull/11352`__: ENH: stats: Add crosstab function. * `#11477 https://github.com/scipy/scipy/pull/11477`__: FIX: bounded parameter in cdfchn.f gives bad results * `#11695 https://github.com/scipy/scipy/pull/11695`__: ENH: stats: add method of moments to \`rv_continuous.fit\` * `#11911 https://github.com/scipy/scipy/pull/11911`__: ENH: Added bounds to boxcox and boxcox_normmax * `#12438 https://github.com/scipy/scipy/pull/12438`__: BUG: use ellipkm1 in elliptical filter design to prevent numerical... * `#12531 https://github.com/scipy/scipy/pull/12531`__: ENH: stats: add Page's L test * `#12603 https://github.com/scipy/scipy/pull/12603`__: ENH: stats: Add \`binomtest\` to replace \`binom_test\`. * `#12653 https://github.com/scipy/scipy/pull/12653`__: ENH: stats: add Somers' D test * `#12676 https://github.com/scipy/scipy/pull/12676`__: BUG: update median averaging in signal.csd * `#12760 https://github.com/scipy/scipy/pull/12760`__: BUG: special: erfinv(x<<1) loses precision * `#12801 https://github.com/scipy/scipy/pull/12801`__: ENH: Add single-sided p-values to remaining spearmanr and linregress * `#12873 https://github.com/scipy/scipy/pull/12873`__: ENH: Stats: add Alexander Govern Test * `#13008 https://github.com/scipy/scipy/pull/13008`__: ENH: Add 'alternative' to functions using normal CDF for p-value * `#13040 https://github.com/scipy/scipy/pull/13040`__: BUG: Allow RectSphereBivariateSpline to accept negative longitude * `#13048 https://github.com/scipy/scipy/pull/13048`__: ENH: stats: Add a function that computes the relative risk. * `#13067 https://github.com/scipy/scipy/pull/13067`__: ENH: Add weights parameter to stats.gmean * `#13084 https://github.com/scipy/scipy/pull/13084`__: ENH: fast Hankel transform * `#13104 https://github.com/scipy/scipy/pull/13104`__: MAINT: upgrade python version (drop python 3.6) for docker dev... * `#13153 https://github.com/scipy/scipy/pull/13153`__: ENH: added association measurements Pearsons Contingency Coefficient,... * `#13166 https://github.com/scipy/scipy/pull/13166`__: ENH: stats: Add nan_policy to zmap. * `#13175 https://github.com/scipy/scipy/pull/13175`__: MAINT: tests for tall cost matrices in \`linear_sum_assignment\` * `#13177 https://github.com/scipy/scipy/pull/13177`__: BUG: raise NotImplementedError in fourier_ellipsoid when ndim... * `#13184 https://github.com/scipy/scipy/pull/13184`__: BUG: stats: Fix min and max calculation of mstats.describe with... * `#13188 https://github.com/scipy/scipy/pull/13188`__: DOC: stats: make null and alternative hypotheses of kstest more... * `#13193 https://github.com/scipy/scipy/pull/13193`__: MAINT: stats: chisquare check sum of observed/expected frequencies * `#13197 https://github.com/scipy/scipy/pull/13197`__: ENH/MAINT: HiGHS upstream enhancements and bug fixes * `#13198 https://github.com/scipy/scipy/pull/13198`__: ENH: allow inference of output_shape from out array in affine_transform * `#13204 https://github.com/scipy/scipy/pull/13204`__: ENH: stats: add Zipfian (different from Zipf/zeta) distribution * `#13208 https://github.com/scipy/scipy/pull/13208`__: REL: set version to 1.7.0.dev0 * `#13216 https://github.com/scipy/scipy/pull/13216`__: TST: stats: break up and mark slow tests * `#13224 https://github.com/scipy/scipy/pull/13224`__: Update docs for the weighted τ * `#13230 https://github.com/scipy/scipy/pull/13230`__: ENH: linalg: Add LAPACK wrapper for tgexc. * `#13232 https://github.com/scipy/scipy/pull/13232`__: MAINT: stats: raise error when input to kruskal has >1 dim * `#13233 https://github.com/scipy/scipy/pull/13233`__: DOC: stats: fix MGF of arcsine and entropy of t in tutorial * `#13236 https://github.com/scipy/scipy/pull/13236`__: MAINT: reorganize shared linear assignment tests * `#13237 https://github.com/scipy/scipy/pull/13237`__: BENCH: Refactor stats.Distribution to easily add new distributions * `#13238 https://github.com/scipy/scipy/pull/13238`__: BUG: stats: fix wrong shape output of burr and fisk distributions * `#13240 https://github.com/scipy/scipy/pull/13240`__: MAINT: add tests of trivial cost matrices for linear sum assignment * `#13252 https://github.com/scipy/scipy/pull/13252`__: DOC: optimize: add \`optimize.linear_sum_assignment\` tutorial. * `#13254 https://github.com/scipy/scipy/pull/13254`__: BUG: Fix precision issues for constant input in skew and kurtosis * `#13262 https://github.com/scipy/scipy/pull/13262`__: BUG: scipy.medfilt and .medfilt2d fixes * `#13263 https://github.com/scipy/scipy/pull/13263`__: ENH: add Cramer-von Mises test for two samples * `#13264 https://github.com/scipy/scipy/pull/13264`__: fix a minor typo in \`stats.anderson\` doc * `#13268 https://github.com/scipy/scipy/pull/13268`__: ENH: stats: Add implementation of _entropy for the t distr. * `#13273 https://github.com/scipy/scipy/pull/13273`__: DOC: stats: fix typo in Yeo-Johnson LL function documentation * `#13275 https://github.com/scipy/scipy/pull/13275`__: MAINT: stats: Correct a comment in the _fitstart method of gamma. * `#13283 https://github.com/scipy/scipy/pull/13283`__: BUG: stats: fix the cdf method of rv_discrete class * `#13286 https://github.com/scipy/scipy/pull/13286`__: DOC: stats: clairify rv_continuous/discrete.stats example * `#13288 https://github.com/scipy/scipy/pull/13288`__: DOC: stats: discrete distribution shape parameter restrictions * `#13289 https://github.com/scipy/scipy/pull/13289`__: MAINT: fix a build warning in sigtoolsmodule.c * `#13290 https://github.com/scipy/scipy/pull/13290`__: DOC: Expand the discussion of the nan_policy API. * `#13291 https://github.com/scipy/scipy/pull/13291`__: MAINT: signal, stats: Use keepdims where appropriate. * `#13292 https://github.com/scipy/scipy/pull/13292`__: DOC: stats: note another common parameterization of nbinom * `#13293 https://github.com/scipy/scipy/pull/13293`__: DOC: Change broken link for default values to archived link * `#13295 https://github.com/scipy/scipy/pull/13295`__: BUG: stats: fix the support method to return correct bounds * `#13296 https://github.com/scipy/scipy/pull/13296`__: DOC: stats: Fix latex markup in the kstwo docstring. * `#13297 https://github.com/scipy/scipy/pull/13297`__: TST: mark kde.logpdf overflow test as xslow * `#13298 https://github.com/scipy/scipy/pull/13298`__: Generalized Hyperbolic Distribution * `#13301 https://github.com/scipy/scipy/pull/13301`__: DOC: cluster: Add cluster number note to the docstring of cluster.vq.kmeans * `#13302 https://github.com/scipy/scipy/pull/13302`__: BUG: Fix ndimage.morphology.distance_transform\_\* argument handling * `#13303 https://github.com/scipy/scipy/pull/13303`__: CI: prevent Codecov giving false CI failures and wrong PR annotations * `#13313 https://github.com/scipy/scipy/pull/13313`__: ENH: static typing for qhull * `#13316 https://github.com/scipy/scipy/pull/13316`__: Pythran implementation of scipy.signal._spectral * `#13317 https://github.com/scipy/scipy/pull/13317`__: DOC: forward port 1.6.0 relnotes * `#13319 https://github.com/scipy/scipy/pull/13319`__: ENH: stats: add fast numerical inversion of distribution CDF * `#13320 https://github.com/scipy/scipy/pull/13320`__: ENH: x0 for differential_evolution * `#13324 https://github.com/scipy/scipy/pull/13324`__: DOC correct linprog highs versionadded to 1.6 * `#13326 https://github.com/scipy/scipy/pull/13326`__: MAINT: update numpydoc to v1.1.0 * `#13327 https://github.com/scipy/scipy/pull/13327`__: DOC: interpolate: improved docstring examples of \`interpolate.interpn()\`... * `#13328 https://github.com/scipy/scipy/pull/13328`__: ENH: Boost stats distributions * `#13330 https://github.com/scipy/scipy/pull/13330`__: ENH: stats: add noncentral hypergeometric distributions (Fisher's... * `#13331 https://github.com/scipy/scipy/pull/13331`__: MAINT/ENH: resolve mypy warnings/errors * `#13332 https://github.com/scipy/scipy/pull/13332`__: DOC: interpolate: improved docstring of \`interpolate.interp2d\`... * `#13333 https://github.com/scipy/scipy/pull/13333`__: ENH: stats: Some more _sf and _isf implementations. * `#13334 https://github.com/scipy/scipy/pull/13334`__: MAINT: stats: Clean up a few defunct comments in _continuous_distns.py * `#13336 https://github.com/scipy/scipy/pull/13336`__: Pythran version of scipy.optimize._group_columns * `#13337 https://github.com/scipy/scipy/pull/13337`__: DOC|ENH: type hinting in scipy.integrate.simpson * `#13346 https://github.com/scipy/scipy/pull/13346`__: ENH: stats: add 'ddof' parameter to the 'variation' function * `#13355 https://github.com/scipy/scipy/pull/13355`__: ENH: stats: implement _logpdf, _sf and _isf for loggamma. * `#13360 https://github.com/scipy/scipy/pull/13360`__: ENH|DOC: fix docstring and input validation in interpolate.RectSphereBivariateSpline * `#13366 https://github.com/scipy/scipy/pull/13366`__: BUG: stats: Don't raise ZeroDivisionError in _unequal_var_ttest_denom * `#13370 https://github.com/scipy/scipy/pull/13370`__: ENH: fix ARGUS distribution for small parameters in stats * `#13371 https://github.com/scipy/scipy/pull/13371`__: ENH: stats: add \`bootstrap\` for estimating confidence interval... * `#13373 https://github.com/scipy/scipy/pull/13373`__: BUG: io/matlab: preserve dimensions of empty >=2D arrays * `#13374 https://github.com/scipy/scipy/pull/13374`__: ENH: stats: add skewed Cauchy distribution * `#13379 https://github.com/scipy/scipy/pull/13379`__: BUG: sparse: fix verbosity in sparse lsqr * `#13383 https://github.com/scipy/scipy/pull/13383`__: TST: stats: mark many dimension permutation t-test slow * `#13384 https://github.com/scipy/scipy/pull/13384`__: MAINT: Make keywords array static * `#13388 https://github.com/scipy/scipy/pull/13388`__: PERF: Avoid duplicate mean calculations in skew and kurtosis * `#13389 https://github.com/scipy/scipy/pull/13389`__: DOC: Fix deprecated directive syntax * `#13390 https://github.com/scipy/scipy/pull/13390`__: DOC: Correct line length for Parameter Section underline * `#13393 https://github.com/scipy/scipy/pull/13393`__: MAINT: stats: allow wishart dim - 1 < df < dim * `#13395 https://github.com/scipy/scipy/pull/13395`__: DOC: fix typo in setup.py warning message * `#13396 https://github.com/scipy/scipy/pull/13396`__: BUG: Fix MLE for Nakagami \`nakagami_gen.fit\` * `#13397 https://github.com/scipy/scipy/pull/13397`__: MAINT:linalg: Fix tgsen family wrapper and ordqz * `#13406 https://github.com/scipy/scipy/pull/13406`__: TST: add error handling tests for sparse BSR ctor * `#13413 https://github.com/scipy/scipy/pull/13413`__: DOC: ultra-quickstart guide * `#13418 https://github.com/scipy/scipy/pull/13418`__: BUG: Fix moment returning inconsistent types and shapes * `#13423 https://github.com/scipy/scipy/pull/13423`__: DOC: Update example for leaf_label_func/dendrogram * `#13431 https://github.com/scipy/scipy/pull/13431`__: ENH: stats: override _rvs for nhypergeom * `#13432 https://github.com/scipy/scipy/pull/13432`__: Add indicator in NDInterpolator docstring that N must be > 1 * `#13434 https://github.com/scipy/scipy/pull/13434`__: DOC: stats: note relationship between scaled-inv-chi2 and invgamma * `#13436 https://github.com/scipy/scipy/pull/13436`__: ENH: interpolate: add input validation to check input x-y is... * `#13441 https://github.com/scipy/scipy/pull/13441`__: ENH: add functionality \`barnard_exact\` test to scipy.stats. * `#13443 https://github.com/scipy/scipy/pull/13443`__: MAINT: stats: Updates for skewcauchy * `#13444 https://github.com/scipy/scipy/pull/13444`__: DOC: clarify range of \`a\` parameter fpr johnsonsu/johnsonsb * `#13445 https://github.com/scipy/scipy/pull/13445`__: DOC: fix runtests guidelines. * `#13446 https://github.com/scipy/scipy/pull/13446`__: MAINT: stats: Add _fitstart method to wrapcauchy. * `#13447 https://github.com/scipy/scipy/pull/13447`__: DEV: Update development Docker image * `#13448 https://github.com/scipy/scipy/pull/13448`__: ENH: Add annotations for \`scipy.spatial.distance\` * `#13451 https://github.com/scipy/scipy/pull/13451`__: DOC: minor formatting. * `#13458 https://github.com/scipy/scipy/pull/13458`__: DOC: indent see also. * `#13460 https://github.com/scipy/scipy/pull/13460`__: DOC: stats: Fix link to Cramer-von Mises wikipedia article. * `#13461 https://github.com/scipy/scipy/pull/13461`__: DOC: reorganize scipy.stats overview docs page * `#13463 https://github.com/scipy/scipy/pull/13463`__: DOC: misc formatting fixes * `#13466 https://github.com/scipy/scipy/pull/13466`__: DOC: Typo in see also s/SmoothUni/SmoothBi/g * `#13467 https://github.com/scipy/scipy/pull/13467`__: DOC: optimize: add description about \`tol\` argument for \`minimize\`. * `#13469 https://github.com/scipy/scipy/pull/13469`__: MAINT: Refactor optimization methods to use scipy.stats.qmc * `#13477 https://github.com/scipy/scipy/pull/13477`__: CI: pin numpy to 1.19.5 for the three macOS CI jobs * `#13478 https://github.com/scipy/scipy/pull/13478`__: DOC: fix typos where double :: for Sphinx directives were missing * `#13481 https://github.com/scipy/scipy/pull/13481`__: CI: pin numpy to 1.19.5 in the 4 parallel Windows builds on Azure * `#13482 https://github.com/scipy/scipy/pull/13482`__: CI: use numpy 1.20.0 again in macOS CI * `#13483 https://github.com/scipy/scipy/pull/13483`__: DOC: Multiple documentation syntax fixes. * `#13484 https://github.com/scipy/scipy/pull/13484`__: Move some pythran config from CI to setup * `#13487 https://github.com/scipy/scipy/pull/13487`__: DOC: add a tutorial about scipy.stats.qmc * `#13492 https://github.com/scipy/scipy/pull/13492`__: ENH: GH actions should not run on forks * `#13493 https://github.com/scipy/scipy/pull/13493`__: DEV: Enable gitpod for SciPy * `#13495 https://github.com/scipy/scipy/pull/13495`__: DOC One-word typo in the documentation of optimize.linprog_simplex * `#13499 https://github.com/scipy/scipy/pull/13499`__: DOC: describe LSAP implementation * `#13502 https://github.com/scipy/scipy/pull/13502`__: BUG: Bounds created with lists weren't working for Powell * `#13507 https://github.com/scipy/scipy/pull/13507`__: MAINT, TST: stats: centralize invalid parameters list for all... * `#13510 https://github.com/scipy/scipy/pull/13510`__: DOC: stats: fix small doc errors in 'multivariate_hypergeom' * `#13513 https://github.com/scipy/scipy/pull/13513`__: DOC: Added math notation in examples in ltisys.py * `#13514 https://github.com/scipy/scipy/pull/13514`__: ENH: simplify low_0_bit function for Sobol * `#13515 https://github.com/scipy/scipy/pull/13515`__: ENH: optimize: add bound constraint support for nelder-mead solver * `#13516 https://github.com/scipy/scipy/pull/13516`__: DOC: reduce LaTeX usage for johnsonb docstring * `#13519 https://github.com/scipy/scipy/pull/13519`__: BLD: remove build_sphinx support from setup.py * `#13527 https://github.com/scipy/scipy/pull/13527`__: TST: stats: xfail ttest_ind_randperm_alternative2 on 32 bit * `#13530 https://github.com/scipy/scipy/pull/13530`__: DOC: correct comparisons between median filter functions * `#13532 https://github.com/scipy/scipy/pull/13532`__: ENH: release the GIL inside medfilt2d * `#13538 https://github.com/scipy/scipy/pull/13538`__: DOC: optimize: fix minor doc error in 'fmin_powell' (#13511) * `#13546 https://github.com/scipy/scipy/pull/13546`__: DOC: fix list of "mode" options for ndimage * `#13549 https://github.com/scipy/scipy/pull/13549`__: ENH: stats: add 'alternative' keyword to some normality tests. * `#13551 https://github.com/scipy/scipy/pull/13551`__: MAINT: add git to docker env * `#13552 https://github.com/scipy/scipy/pull/13552`__: MAINT: stats: remove float_power shim * `#13553 https://github.com/scipy/scipy/pull/13553`__: DOC: use support rather than a/b in stats tutorial * `#13560 https://github.com/scipy/scipy/pull/13560`__: MAINT: optimize: improve linprog error message for sparse input... * `#13562 https://github.com/scipy/scipy/pull/13562`__: MAINT: optimize: using np.isclose instead of _within_tolerance. * `#13566 https://github.com/scipy/scipy/pull/13566`__: ENH: Speed up hdquantiles_sd() * `#13569 https://github.com/scipy/scipy/pull/13569`__: BENCH: optimize: benchmark only HiGHS methods; add bigger linprog... * `#13574 https://github.com/scipy/scipy/pull/13574`__: DOC: In description of cluster.hierarchy.dendrogram 'level' parameter,... * `#13576 https://github.com/scipy/scipy/pull/13576`__: ENH: improve discrepancy performance * `#13579 https://github.com/scipy/scipy/pull/13579`__: TST: Add pybind11 to tox environments * `#13583 https://github.com/scipy/scipy/pull/13583`__: BUG: Fix Dockerfile apt-get installs * `#13588 https://github.com/scipy/scipy/pull/13588`__: MAINT: forward port 1.6.1 relnotes. * `#13593 https://github.com/scipy/scipy/pull/13593`__: BUG: stats: preserve sample dtype for bin edges * `#13595 https://github.com/scipy/scipy/pull/13595`__: ENH: interpolate: add RBFInterpolator * `#13596 https://github.com/scipy/scipy/pull/13596`__: DOC: Fix indentation in new_stats_distribution.rst.inc * `#13601 https://github.com/scipy/scipy/pull/13601`__: Add dpss for get_window function * `#13604 https://github.com/scipy/scipy/pull/13604`__: DOC: Correct dual annealing visiting param range. * `#13605 https://github.com/scipy/scipy/pull/13605`__: Add Codecov badge to README * `#13607 https://github.com/scipy/scipy/pull/13607`__: MAINT: stats: fix crystalball entropy * `#13611 https://github.com/scipy/scipy/pull/13611`__: Better argument preparation for distributions in stats package. * `#13612 https://github.com/scipy/scipy/pull/13612`__: Add docker run command for Windows cmd * `#13613 https://github.com/scipy/scipy/pull/13613`__: MAINT, CI: mypy: fix typing errors + add mypy to CI * `#13616 https://github.com/scipy/scipy/pull/13616`__: FIX: Return correct output for invgauss.cdf when mu is very small * `#13617 https://github.com/scipy/scipy/pull/13617`__: MAINT: accept numbers and iterables for width in find_peaks_cwt * `#13620 https://github.com/scipy/scipy/pull/13620`__: CI: disable the mypy CI job (partial revert of gh-13613) * `#13621 https://github.com/scipy/scipy/pull/13621`__: DOC: signal: use array_like for input types * `#13622 https://github.com/scipy/scipy/pull/13622`__: MAINT: clean up some unused files, make \`mypy scipy\` pass * `#13623 https://github.com/scipy/scipy/pull/13623`__: CI: enable Mypy CI job again * `#13624 https://github.com/scipy/scipy/pull/13624`__: TST: test more values for \`visiting_param\` input to \`dual_annealing\` * `#13625 https://github.com/scipy/scipy/pull/13625`__: Rename integrate.simps to integrate.simpsons in documentation... * `#13631 https://github.com/scipy/scipy/pull/13631`__: ENH: add a \`stats.differential_entropy\` function * `#13633 https://github.com/scipy/scipy/pull/13633`__: BUG: stats.binned_statistic_2d user function expecting arrays * `#13641 https://github.com/scipy/scipy/pull/13641`__: ENH: Added degrees parameter to rotvec * `#13645 https://github.com/scipy/scipy/pull/13645`__: MAINT: mypy: don't install numpy-stubs * `#13649 https://github.com/scipy/scipy/pull/13649`__: BUG: sparse: csc_matrix.argmax() integer overflow * `#13650 https://github.com/scipy/scipy/pull/13650`__: ENH: stats: add 'alternative' parameter to ansari * `#13652 https://github.com/scipy/scipy/pull/13652`__: DOC: fix eigvalsh documentation (#13651) * `#13654 https://github.com/scipy/scipy/pull/13654`__: BUG: Fix LatinHypercubes * `#13656 https://github.com/scipy/scipy/pull/13656`__: DOC: Fix PCHIP references * `#13657 https://github.com/scipy/scipy/pull/13657`__: TST: remove IPython warning in debug session * `#13658 https://github.com/scipy/scipy/pull/13658`__: Remove spurious quotes in docstring * `#13661 https://github.com/scipy/scipy/pull/13661`__: ENH: stats: improve efficiency of / fix bug in exact permutation... * `#13667 https://github.com/scipy/scipy/pull/13667`__: MAINT: Make latest Docker image default * `#13668 https://github.com/scipy/scipy/pull/13668`__: MAINT: add .theia/ to .gitignore * `#13669 https://github.com/scipy/scipy/pull/13669`__: BLD: change SCIPY_USE_PYTHRAN default to \`1\` * `#13676 https://github.com/scipy/scipy/pull/13676`__: ENH Small improvements for LSQR with damp * `#13678 https://github.com/scipy/scipy/pull/13678`__: MAINT: add Pythran-generated files to .gitignore * `#13679 https://github.com/scipy/scipy/pull/13679`__: MAINT: move the \`conda develop .\` in the Gitpod config * `#13680 https://github.com/scipy/scipy/pull/13680`__: DOC: Add cKDTree note comparing it with KDTree * `#13681 https://github.com/scipy/scipy/pull/13681`__: DOC: build doc updates on Pythran, compiled code, and cleanups * `#13683 https://github.com/scipy/scipy/pull/13683`__: BUG: mmwrite correctly serializes non skew-symmetric arrays * `#13684 https://github.com/scipy/scipy/pull/13684`__: FIX: fix numerical overflow in gamma.isf method * `#13685 https://github.com/scipy/scipy/pull/13685`__: BUG: fix cosine distance range to 0-2 * `#13694 https://github.com/scipy/scipy/pull/13694`__: MAINT: fix warning emitted when NumPy version is incorrect * `#13696 https://github.com/scipy/scipy/pull/13696`__: ENH: support trimming in ttest_ind * `#13698 https://github.com/scipy/scipy/pull/13698`__: BUG: stats: Fix spurious warnings generated by arcsine.pdf * `#13701 https://github.com/scipy/scipy/pull/13701`__: DEV: scipy.interpolate b-splines (periodic case) * `#13702 https://github.com/scipy/scipy/pull/13702`__: DEP: Clean up spent deprecations in spatial.distance * `#13703 https://github.com/scipy/scipy/pull/13703`__: MAINT: fix issues found by static code analysis * `#13706 https://github.com/scipy/scipy/pull/13706`__: ENH: stats: Implement sf and isf for the laplace distribution. * `#13711 https://github.com/scipy/scipy/pull/13711`__: MAINT: stats: fix broadcasting for scipy.stats.entropy * `#13712 https://github.com/scipy/scipy/pull/13712`__: BUG: stats: Override _fitstart for the invweibull distribution. * `#13713 https://github.com/scipy/scipy/pull/13713`__: DOC: update toolchain.rst to reflect windows universal C runtime * `#13714 https://github.com/scipy/scipy/pull/13714`__: MAINT: stats: Remove an unused list from test_continuous_basic.py. * `#13715 https://github.com/scipy/scipy/pull/13715`__: MAINT: stats: No need to suppress frechet deprecation warnings. * `#13716 https://github.com/scipy/scipy/pull/13716`__: MAINT: use super() as described by PEP 3135 * `#13718 https://github.com/scipy/scipy/pull/13718`__: MAINT: new-style class, removing inheritance to object * `#13721 https://github.com/scipy/scipy/pull/13721`__: MAINT: add a type-ignore for mpmath (#13721) * `#13723 https://github.com/scipy/scipy/pull/13723`__: MAINT: mypy: ignore mpmath imports in mypy.ini * `#13724 https://github.com/scipy/scipy/pull/13724`__: DOC: pydata sphinx theme * `#13725 https://github.com/scipy/scipy/pull/13725`__: BENCH: add benchmark for Kendalltau * `#13727 https://github.com/scipy/scipy/pull/13727`__: CI: simplify Pythran configuration setup for Azure * `#13731 https://github.com/scipy/scipy/pull/13731`__: MAINT: stats: Some flake8-driven clean up. * `#13732 https://github.com/scipy/scipy/pull/13732`__: ENH: stats: Studentized Range Distribution * `#13735 https://github.com/scipy/scipy/pull/13735`__: DOC: correct Voronoi docstring * `#13738 https://github.com/scipy/scipy/pull/13738`__: DOC: add example to wright_bessel * `#13739 https://github.com/scipy/scipy/pull/13739`__: ENH: stats: Implement _sf and _isf for the chi distribution. * `#13741 https://github.com/scipy/scipy/pull/13741`__: MAINT: prevent overwriting of x in minimize * `#13747 https://github.com/scipy/scipy/pull/13747`__: DOC: Add note for interp1d for non-unique x-values * `#13749 https://github.com/scipy/scipy/pull/13749`__: MAINT: forward port 1.6.2 relnotes * `#13759 https://github.com/scipy/scipy/pull/13759`__: MAINT: simpson small performance speedups * `#13765 https://github.com/scipy/scipy/pull/13765`__: FIX: npymath missing causing npy_log1p to be unknown * `#13768 https://github.com/scipy/scipy/pull/13768`__: BENCH: Add missing pythran dependency * `#13770 https://github.com/scipy/scipy/pull/13770`__: ENH: stats.contingency: Add the sparse option to crosstab. * `#13774 https://github.com/scipy/scipy/pull/13774`__: DEP: Deprecate squeezing input vectors in spatial.distance * `#13775 https://github.com/scipy/scipy/pull/13775`__: Enable trust region methods to use a finite difference Hessian... * `#13777 https://github.com/scipy/scipy/pull/13777`__: DOC: Fix Ubuntu/Debian installation instructions * `#13778 https://github.com/scipy/scipy/pull/13778`__: DOC: remove references to RandomState * `#13782 https://github.com/scipy/scipy/pull/13782`__: MAINT: LBFGSB err msg on MAXLS changed closes #11718 * `#13785 https://github.com/scipy/scipy/pull/13785`__: BENCH: Add benchmark for cdist/pdist with weights * `#13786 https://github.com/scipy/scipy/pull/13786`__: MAINT: Prepare cdist/pdist for C++ rework * `#13787 https://github.com/scipy/scipy/pull/13787`__: MAINT: stats: move entropy and differential_entropy functions... * `#13790 https://github.com/scipy/scipy/pull/13790`__: DOC: Add some dependencies for Dockerfile doc of scipy development. * `#13792 https://github.com/scipy/scipy/pull/13792`__: BUG: stats: Fix broadcasting in wrapcauchy.cdf * `#13795 https://github.com/scipy/scipy/pull/13795`__: MAINT: stats: add hypotests to __all__ in init.py, not stats.py * `#13797 https://github.com/scipy/scipy/pull/13797`__: MAINT: stats: probplot: don't plot least-squares fit line unless... * `#13798 https://github.com/scipy/scipy/pull/13798`__: MAINT: fix incorrect code comment in \`hierarchy.to_tree\` * `#13802 https://github.com/scipy/scipy/pull/13802`__: DEV: add environment.yml file for development with conda/mamba * `#13803 https://github.com/scipy/scipy/pull/13803`__: DOC: fix doc build warning about arxiv role already being registered * `#13804 https://github.com/scipy/scipy/pull/13804`__: DOC+MAINT: optimize: lb and ub in the Bounds constructor are... * `#13807 https://github.com/scipy/scipy/pull/13807`__: MAINT: Dont use parallel Sphinx * `#13808 https://github.com/scipy/scipy/pull/13808`__: MAINT: cluster.to_tree: more idiomatic looping over rows of matrix... * `#13810 https://github.com/scipy/scipy/pull/13810`__: MAINT: add a CODEOWNERS file * `#13811 https://github.com/scipy/scipy/pull/13811`__: MAINT: Add ci skip to azp * `#13814 https://github.com/scipy/scipy/pull/13814`__: ENH/DOC: pydata sphinx theme polishing * `#13817 https://github.com/scipy/scipy/pull/13817`__: DOC: Misc parameter typo and casing in scipy/linalg/_decomp_ldl.py * `#13818 https://github.com/scipy/scipy/pull/13818`__: MAINT: stats: keep \`entropy\` importable from \`scipy.stats.distributions\` * `#13820 https://github.com/scipy/scipy/pull/13820`__: BUG: update _kendall_p_exact ValueError to f-string * `#13831 https://github.com/scipy/scipy/pull/13831`__: FIX:DEP: Allow better tolerance control for pinv and pinvh and... * `#13832 https://github.com/scipy/scipy/pull/13832`__: BUG: stats: Fix rvs for levy_stable when alpha=1 * `#13833 https://github.com/scipy/scipy/pull/13833`__: MAINT: Add inline type hintings for stats.qmc * `#13836 https://github.com/scipy/scipy/pull/13836`__: MAINT: Fix a couple compiler warnings. * `#13838 https://github.com/scipy/scipy/pull/13838`__: TST: relax test tolerances for BinomTest * `#13841 https://github.com/scipy/scipy/pull/13841`__: BLD: add \`-std=c99\` flag to scipy.special extensions using... * `#13845 https://github.com/scipy/scipy/pull/13845`__: ENH: stats: add \`method\` parameter to \`differential_entropy\`... * `#13847 https://github.com/scipy/scipy/pull/13847`__: TST: skip on optimize failure on macOS, mark one as xfail * `#13848 https://github.com/scipy/scipy/pull/13848`__: DOC: optimize: move Nelder Mead doc from Unconstrained minimization... * `#13849 https://github.com/scipy/scipy/pull/13849`__: DOC: Roadmap update * `#13852 https://github.com/scipy/scipy/pull/13852`__: CI: fix temporary wrong brew version from GitHub * `#13854 https://github.com/scipy/scipy/pull/13854`__: ENH: Update Scipy Gitpod * `#13859 https://github.com/scipy/scipy/pull/13859`__: TST: fix ultra-slow ttest permutations test * `#13860 https://github.com/scipy/scipy/pull/13860`__: MAINT: clean up LSAP error checking * `#13863 https://github.com/scipy/scipy/pull/13863`__: DOC: remove seed in examples * `#13865 https://github.com/scipy/scipy/pull/13865`__: DOC: optimize: The bounds param of differential_evolution is... * `#13866 https://github.com/scipy/scipy/pull/13866`__: MAINT: special: Remove an unused variable from _poly_approx in... * `#13867 https://github.com/scipy/scipy/pull/13867`__: DOC: stats: Explain meaning of alternatives for fisher_exact. * `#13868 https://github.com/scipy/scipy/pull/13868`__: CI: fix the failing job on linux. * `#13870 https://github.com/scipy/scipy/pull/13870`__: MAINT: move LSAP rectangular matrix handling into solver code * `#13871 https://github.com/scipy/scipy/pull/13871`__: DOC: Add Gitpod documentation * `#13876 https://github.com/scipy/scipy/pull/13876`__: Workflow : Add nightly release of NumPy in linux workflows * `#13877 https://github.com/scipy/scipy/pull/13877`__: DOC: Conform to numpydoc + uniformity. * `#13879 https://github.com/scipy/scipy/pull/13879`__: BUG: signal: fix get_window argument handling and add tests. * `#13881 https://github.com/scipy/scipy/pull/13881`__: CI: remove .travis.yml, remove codecov from CircleCI * `#13882 https://github.com/scipy/scipy/pull/13882`__: BLD: ensure incrementing dev version strings * `#13886 https://github.com/scipy/scipy/pull/13886`__: TST: optimize: skip test_network_flow_limited_capacity w/ UMFPACK... * `#13888 https://github.com/scipy/scipy/pull/13888`__: MAINT: Fix issues involving elif conditions * `#13891 https://github.com/scipy/scipy/pull/13891`__: Rename InivariateSpline to UnivariateSpline * `#13893 https://github.com/scipy/scipy/pull/13893`__: ENH: linprog HiGHS marginals/sensitivy analysis * `#13894 https://github.com/scipy/scipy/pull/13894`__: DOC: Add blank line before \`Return\` section. * `#13897 https://github.com/scipy/scipy/pull/13897`__: DOC: BLD: fix doc build version check, and improve build time * `#13903 https://github.com/scipy/scipy/pull/13903`__: MAINT: Gitpod fixes * `#13907 https://github.com/scipy/scipy/pull/13907`__: ENH: Rewrite minkowski metric in C++ with pybind11 * `#13909 https://github.com/scipy/scipy/pull/13909`__: Revert "Workflow : Add nightly release of NumPy in linux workflows" * `#13910 https://github.com/scipy/scipy/pull/13910`__: DOC: update Readme * `#13911 https://github.com/scipy/scipy/pull/13911`__: MAINT: use dict built-in rather than OrderedDict * `#13920 https://github.com/scipy/scipy/pull/13920`__: BUG: Reactivate conda environment in init * `#13925 https://github.com/scipy/scipy/pull/13925`__: BUG: stats: magnitude of Yates' correction <= abs(observed-expected)... * `#13926 https://github.com/scipy/scipy/pull/13926`__: DOC: correct return type in disjoint_set.subsets docstring * `#13927 https://github.com/scipy/scipy/pull/13927`__: DOC/MAINT: Add copyright notice to qmc.primes_from_2_to * `#13928 https://github.com/scipy/scipy/pull/13928`__: BUG: DOC: signal: fix need argument config and add missing doc... * `#13929 https://github.com/scipy/scipy/pull/13929`__: REL: add PEP 621 (project metadata in pyproject.toml) support * `#13931 https://github.com/scipy/scipy/pull/13931`__: MAINT: special: get rid of _logit.c.src * `#13934 https://github.com/scipy/scipy/pull/13934`__: ENH: signal: make \`get_window\` supports \`general_cosine\`... * `#13940 https://github.com/scipy/scipy/pull/13940`__: MAINT: QMCEngine d input validation * `#13941 https://github.com/scipy/scipy/pull/13941`__: MAINT: forward port 1.6.3 relnotes * `#13944 https://github.com/scipy/scipy/pull/13944`__: BUG: spatial: fix weight handling of \`distance.sokalmichener\`. * `#13947 https://github.com/scipy/scipy/pull/13947`__: MAINT: Remove duplicate calculations in sokalmichener * `#13949 https://github.com/scipy/scipy/pull/13949`__: DOC: minor grammar fixes in minimize and KDTree.query * `#13951 https://github.com/scipy/scipy/pull/13951`__: ENH: Add Boschloo exact test to stats * `#13956 https://github.com/scipy/scipy/pull/13956`__: ENH: spatial: add \`axis\` and \`keepdims\` optional argument... * `#13963 https://github.com/scipy/scipy/pull/13963`__: MAINT: stats: Fix unused imports and a few other issues related... * `#13971 https://github.com/scipy/scipy/pull/13971`__: DOC: Add Karl Pearson's reference to chi-square test * `#13972 https://github.com/scipy/scipy/pull/13972`__: ENH: cluster: add an optional argument \`seed\` for \`kmeans\`... * `#13973 https://github.com/scipy/scipy/pull/13973`__: BLD: fix build warnings for causal/anticausal pointers in ndimage * `#13975 https://github.com/scipy/scipy/pull/13975`__: ENH: set empty array norm to zero. * `#13977 https://github.com/scipy/scipy/pull/13977`__: MAINT: signal: replace distutils templating with tempita * `#13978 https://github.com/scipy/scipy/pull/13978`__: MAINT: improve validations and keyword only arguments for some... * `#13979 https://github.com/scipy/scipy/pull/13979`__: ENH: Add Inverse of Log CDF of Normal Distribution * `#13983 https://github.com/scipy/scipy/pull/13983`__: Fixing \`ndimage.watershed_ift\` tutorial's documentation * `#13987 https://github.com/scipy/scipy/pull/13987`__: DOC: Adding examples to docstrings in morphology: white_tophat,... * `#13989 https://github.com/scipy/scipy/pull/13989`__: DOC: interpolate: improve examples of \`RegularGridInterpolator\`... * `#13990 https://github.com/scipy/scipy/pull/13990`__: MAINT, DOC: optimize: Make the input validation explanation clear... * `#13992 https://github.com/scipy/scipy/pull/13992`__: Workflow : Add nightly release of NumPy in linux workflows * `#13995 https://github.com/scipy/scipy/pull/13995`__: Doc: Continuous integration information * `#14000 https://github.com/scipy/scipy/pull/14000`__: BUG: sparse: Fix DIA.diagonal bug and add a regression test * `#14004 https://github.com/scipy/scipy/pull/14004`__: ENH: Fast addition dia matrix * `#14006 https://github.com/scipy/scipy/pull/14006`__: MAINT: optimize: add validation to check func parameter number... * `#14008 https://github.com/scipy/scipy/pull/14008`__: BUG: Raise exception for inconsistent WAV header * `#14009 https://github.com/scipy/scipy/pull/14009`__: DEP: Remove usage of numpy.compat * `#14010 https://github.com/scipy/scipy/pull/14010`__: MAINT: add support for wheel DL proxy * `#14012 https://github.com/scipy/scipy/pull/14012`__: DOC: Broaden Exact Test Reference * `#14015 https://github.com/scipy/scipy/pull/14015`__: MAINT: remove brew update * `#14017 https://github.com/scipy/scipy/pull/14017`__: BENCH: Add more formats for sparse arithmetic * `#14018 https://github.com/scipy/scipy/pull/14018`__: BENCH: add benchmark for f_oneway * `#14020 https://github.com/scipy/scipy/pull/14020`__: MAINT: modify np.int\_ to np.int32 to make it the same for 32/64... * `#14023 https://github.com/scipy/scipy/pull/14023`__: MAINT: Fix clang build and remove some unicode characters * `#14025 https://github.com/scipy/scipy/pull/14025`__: BUG: sparse: fix DIA.setdiag issue * `#14026 https://github.com/scipy/scipy/pull/14026`__: TST: optimize: xfail part of test_powell * `#14029 https://github.com/scipy/scipy/pull/14029`__: CI: github macos fix * `#14030 https://github.com/scipy/scipy/pull/14030`__: MAINT: use 'yield from <expr>' (PEP 380) * `#14031 https://github.com/scipy/scipy/pull/14031`__: MAINT: new-style class, removing inheritance to object * `#14032 https://github.com/scipy/scipy/pull/14032`__: MAINT: CXXFLAGS for Pythran * `#14033 https://github.com/scipy/scipy/pull/14033`__: ENH: Port sqeuclidean and braycurtis to _distance_pybind * `#14034 https://github.com/scipy/scipy/pull/14034`__: MAINT: Clean-up 'next = __next__' * `#14045 https://github.com/scipy/scipy/pull/14045`__: MAINT: bump PYVER pavement.py * `#14047 https://github.com/scipy/scipy/pull/14047`__: DEV: initialize boost submodule in Gitpod Dockerfile * `#14051 https://github.com/scipy/scipy/pull/14051`__: BLD: if boost submodule content is missing, error out early * `#14052 https://github.com/scipy/scipy/pull/14052`__: DOC: missing submodule init information * `#14057 https://github.com/scipy/scipy/pull/14057`__: DOC: special: Add Examples to \`psi\` docstring * `#14058 https://github.com/scipy/scipy/pull/14058`__: BUG: fixed a dtype bug in linalg.solve. * `#14060 https://github.com/scipy/scipy/pull/14060`__: Doc: Fix typo in documentation of spence function. * `#14061 https://github.com/scipy/scipy/pull/14061`__: MAINT:stats: Type annotations for _sobol.pyx * `#14062 https://github.com/scipy/scipy/pull/14062`__: DOC: A few small fixes in quickstart_gitpod.rst * `#14063 https://github.com/scipy/scipy/pull/14063`__: DOC: signal: add Add Examples to \`cont2discrete\` docstring * `#14064 https://github.com/scipy/scipy/pull/14064`__: DOC: optimize: Add Examples to fmin_bfgs docstring * `#14065 https://github.com/scipy/scipy/pull/14065`__: Add example for scipy stats.trim1 under docstring * `#14066 https://github.com/scipy/scipy/pull/14066`__: DOC add example to scipy.special.hermite * `#14067 https://github.com/scipy/scipy/pull/14067`__: DOC add alpha docstring description, add example to docstring * `#14070 https://github.com/scipy/scipy/pull/14070`__: DOC add parameters, return, and example to docstring * `#14072 https://github.com/scipy/scipy/pull/14072`__: MAINT/TST: Fix tests failing with the nightly build of numpy. * `#14075 https://github.com/scipy/scipy/pull/14075`__: DOC Improve the code snippet in signal.hilbert docstring. * `#14076 https://github.com/scipy/scipy/pull/14076`__: DOC: Document Jensen-Shannon distance being accepted by cdist/pdist * `#14079 https://github.com/scipy/scipy/pull/14079`__: BLD: Avoid importing scipy.stats during cythonize stage * `#14082 https://github.com/scipy/scipy/pull/14082`__: MAINT: Remove old, commented extract_diagonal * `#14083 https://github.com/scipy/scipy/pull/14083`__: MAINT: sparse: Remove defunct function extract_diagonal * `#14085 https://github.com/scipy/scipy/pull/14085`__: ENH: Implement canberra distance in _distance_pybind * `#14086 https://github.com/scipy/scipy/pull/14086`__: MAINT: Clear scipy namespace of entries better imported from... * `#14088 https://github.com/scipy/scipy/pull/14088`__: Install Pythran from sources for python 3.10 * `#14092 https://github.com/scipy/scipy/pull/14092`__: BUG: Fixes issue with clang. * `#14094 https://github.com/scipy/scipy/pull/14094`__: DOC: Correct the inconsistence definition of Default in class... * `#14105 https://github.com/scipy/scipy/pull/14105`__: TST: stats: mannwhitneyu: check that mstats and stats mannwhitneyu... * `#14106 https://github.com/scipy/scipy/pull/14106`__: DOC: stats.mstats: mannwhitneyu: the returned statistic is the... * `#14107 https://github.com/scipy/scipy/pull/14107`__: ENH: stats: bootstrap: add \`vectorized\` parameter; automatically... * `#14109 https://github.com/scipy/scipy/pull/14109`__: BUG: fix two issues in the fblas signature files * `#14110 https://github.com/scipy/scipy/pull/14110`__: DOC: mailmap update * `#14113 https://github.com/scipy/scipy/pull/14113`__: ENH: stats: bootstrap: add \`paired\` parameter * `#14116 https://github.com/scipy/scipy/pull/14116`__: MAINT: fix deprecated Python C API usage in odr * `#14118 https://github.com/scipy/scipy/pull/14118`__: DOC: 1.7.0 release notes * `#14125 https://github.com/scipy/scipy/pull/14125`__: DOC: fix typo * `#14126 https://github.com/scipy/scipy/pull/14126`__: ENH: stats: bootstrap: add \`batch\` parameter to control batch... * `#14127 https://github.com/scipy/scipy/pull/14127`__: CI: upgrade pip in benchmarks CI run * `#14130 https://github.com/scipy/scipy/pull/14130`__: BUG: Fix trust-constr report TypeError if verbose is set to 2... * `#14133 https://github.com/scipy/scipy/pull/14133`__: MAINT: interpolate: raise NotImplementedError not ValueError * `#14139 https://github.com/scipy/scipy/pull/14139`__: FIX/DOC: lsqr doctests print failure * `#14145 https://github.com/scipy/scipy/pull/14145`__: MAINT: 1.7.x version pins ("backport") * `#14146 https://github.com/scipy/scipy/pull/14146`__: MAINT: commit count if no tag * `#14164 https://github.com/scipy/scipy/pull/14164`__: TST, BUG: fix rbf matrix value * `#14166 https://github.com/scipy/scipy/pull/14166`__: CI, MAINT: restrictions on pre-release CI * `#14171 https://github.com/scipy/scipy/pull/14171`__: TST: signal: Bump tolerances for a test of Gustafsson's... * `#14175 https://github.com/scipy/scipy/pull/14175`__: TST: stats: Loosen tolerance in some binomtest tests. * `#14182 https://github.com/scipy/scipy/pull/14182`__: MAINT: stats: Update ppcc_plot and ppcc_max docstring. * `#14195 https://github.com/scipy/scipy/pull/14195`__: MAINT: download-wheels missing import * `#14230 https://github.com/scipy/scipy/pull/14230`__: REL: stop shipping generated Cython sources in sdist Checksums ========= MD5 ~~~ 276042cf01da2970b83883375b036eef scipy-1.7.0-cp37-cp37m-macosx_10_9_x86_64.whl 8149ae5442d3ca11d477893b9797b565 scipy-1.7.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl 32d249d21ec09fe351b471cd578a54bd scipy-1.7.0-cp37-cp37m-manylinux_2_5_i686.manylinux1_i686.whl 6f9b11e29d59e276729ec706c38961e2 scipy-1.7.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl c4b23f53f47888744713a25000ed73fd scipy-1.7.0-cp37-cp37m-win32.whl 767b17455eba48cbe3949a4a8609d9e7 scipy-1.7.0-cp37-cp37m-win_amd64.whl ac0f5c087893240b13a78dbc80e002e1 scipy-1.7.0-cp38-cp38-macosx_10_9_x86_64.whl e2e369078c6b7ca29c952cb9971bc154 scipy-1.7.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl 2f4d2c55937133983031428405ef50e5 scipy-1.7.0-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.whl 092c9b3117c2acc378be46fac846b088 scipy-1.7.0-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl 08a560d8f936ea64d65471382d829b43 scipy-1.7.0-cp38-cp38-win32.whl 330c71d5ae61a6f1a96573ee5e2dc536 scipy-1.7.0-cp38-cp38-win_amd64.whl 535e0df93c3005acb69cf32eed57e5d7 scipy-1.7.0-cp39-cp39-macosx_10_9_x86_64.whl 003d015e6c75d683f8e27e80d731f782 scipy-1.7.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl 9306001377da7b018ac0215eed2ba022 scipy-1.7.0-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.whl ed943492a5f97a086c96b6d158028ba4 scipy-1.7.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl 89499df789ff766d6140ab50b8a56745 scipy-1.7.0-cp39-cp39-win32.whl daf4ab11d37576bd792ece587e8f7ae6 scipy-1.7.0-cp39-cp39-win_amd64.whl 8776cb3e803f07c74ddf1045eb177904 scipy-1.7.0.tar.gz a0690bb8aa427fc0a3a59946b532763c scipy-1.7.0.tar.xz f1f1970a34948e59b37e9706a3dfca0e scipy-1.7.0.zip SHA256 ~~~~~~ 821e75f5c16cd7b0ab0ffe7eb9917e5af7b48c25306b4777287de8d792a5f7f3 scipy-1.7.0-cp37-cp37m-macosx_10_9_x86_64.whl 3e7df79b42c3015058a5554bfeab6fd4c9906c46560c9ddebb5c652840f3e182 scipy-1.7.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl 0572256c10ddd058e3d315c555538671ddb2737f27eb56189bfbc3483391403f scipy-1.7.0-cp37-cp37m-manylinux_2_5_i686.manylinux1_i686.whl b77ee5e3a9507622e7f98b16122242a3903397f98d1fe3bc269d904a9025e2bc scipy-1.7.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl 53116abd5060a5b4a58489cf689bee259b779e6b7ecd4ce366e7147aa7c9626e scipy-1.7.0-cp37-cp37m-win32.whl e7b733d4d98e604109715e11f2ab9340eb45d53f803634ed730039070fc3bc11 scipy-1.7.0-cp37-cp37m-win_amd64.whl 4ef3d4df8af40cb6f4d4eaf7b02780109ebabeec334cda26a7899ec9d8de9176 scipy-1.7.0-cp38-cp38-macosx_10_9_x86_64.whl bd4399d4388ca0239a4825e312b3e61b60f743dd6daf49e5870837716502a92a scipy-1.7.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl 80df8af7039bce92fb4cd1ceb056258631b11b3c627384e2d29bb48d44c0cae7 scipy-1.7.0-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.whl 6130e22bf6ee506f7cddde7e0515296d97eb6c6c94f7ef5103c2b77aec5833a7 scipy-1.7.0-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl 97ca4552ace1c313707058e774609af59644321e278c3a539322fab2fb09b943 scipy-1.7.0-cp38-cp38-win32.whl c5d012cb82cc1dcfa72609abaabb4a4ed8113e3e8ac43464508a418c146be57d scipy-1.7.0-cp38-cp38-win_amd64.whl 5eb8f054eebb351af7490bbb57465ba9662c4e16e1786655c6c7ed530eb9a74e scipy-1.7.0-cp39-cp39-macosx_10_9_x86_64.whl 7f4b89c223bd09460b52b669e2e642cab73c28855b540e6ed029692546a86f8d scipy-1.7.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl 2e685fdbfa5b989af4338b29c408b9157ea6addec15d661104c437980c292be5 scipy-1.7.0-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.whl 3595c8b64970c9e5a3f137fa1a9eb64da417e78fb7991d0b098b18a00b776d88 scipy-1.7.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl 5a983d3cebc27294897951a494cebd78af2eae37facf75d9e4ad4f1f62229860 scipy-1.7.0-cp39-cp39-win32.whl aef6e922aea6f2e6bbb539b413c85210a9ee32757535b84204ebd22723e69704 scipy-1.7.0-cp39-cp39-win_amd64.whl 998c5e6ea649489302de2c0bc026ed34284f531df89d2bdc8df3a0d44d165739 scipy-1.7.0.tar.gz 0564d1091b8db03418356f0839cc4bf73b9bf7cd1089586eb690208e1f44bb8d scipy-1.7.0.tar.xz 3a0ec7390c491140551f6493611a30605144a4d47c0410e81f49921ada026993 scipy-1.7.0.zip