Numpy Installation Problem Asking
Hi, I plan to plot a sashimi plot to view the alternative splicing event of my interested "gene" by using MISO. After follow the following link, http://genes.mit.edu/burgelab/miso/docs/and read through the forum. Unfortunately, I still face some problems to run the complete set of MISO successful. I can run some of the python script but I still fail to run some of it :( It shown the following error message when I try some of the MISO python script (compare_miso.py, run_miso.py, sashimi_plot.py, etc). *.* *.* *.* *ImportError: No module named _ufuncs* I can successful run some of the important MISO script (index_gff.py, sam_to_bam.py). I'm downloading everything by using Python-2.7. I suspect it might due to numpy or scipy installation problem. Unfortunately, I still fail to figure it out :( I have try to use Python-3.3. But it will show the following error message when I try to run all the python script under MISO : *.* *.* *SyntaxError: invalid syntax* I have browse through forum and seqanswer etc. Unfortunately I still fail to figure out why it happen :( I have to manual download all the package and install it separately as I don't have the purposely through access network through server. It is due to the network security of server at University. Thanks and looking forward to hear from any of you. best regards edge
On Thu, Mar 20, 2014 at 4:04 PM, Chia Jing Yi <cjyxiaodi1@gmail.com> wrote:
Hi,
I plan to plot a sashimi plot to view the alternative splicing event of my interested "gene" by using MISO.
After follow the following link, http://genes.mit.edu/burgelab/miso/docs/and read through the forum. Unfortunately, I still face some problems to run the complete set of MISO successful.
I can run some of the python script but I still fail to run some of it :( It shown the following error message when I try some of the MISO python script (compare_miso.py, run_miso.py, sashimi_plot.py, etc). *.* *.* *.* *ImportError: No module named _ufuncs*
I can successful run some of the important MISO script (index_gff.py, sam_to_bam.py).
I'm downloading everything by using Python-2.7. I suspect it might due to numpy or scipy installation problem. Unfortunately, I still fail to figure it out :( I have try to use Python-3.3. But it will show the following error message when I try to run all the python script under MISO : *.* *.* *SyntaxError: invalid syntax*
I have browse through forum and seqanswer etc. Unfortunately I still fail to figure out why it happen :( I have to manual download all the package and install it separately as I don't have the purposely through access network through server. It is due to the network security of server at University.
Thanks and looking forward to hear from any of you.
Hi, you have to give a full traceback otherwise we can't help you. And please don't double post, you sent the same message to scipy-user. Ralf
Hi, Thanks a lot for your email. I will upload the full traceback soon. Sorry for posting the same thread at scipy-user too. I don't aware about that numpy and scipy user group is linked. I apologize for my mistakes. I will be more careful in future. best regards Edge On Fri, Mar 21, 2014 at 3:37 AM, Ralf Gommers <ralf.gommers@gmail.com>wrote:
On Thu, Mar 20, 2014 at 4:04 PM, Chia Jing Yi <cjyxiaodi1@gmail.com>wrote:
Hi,
I plan to plot a sashimi plot to view the alternative splicing event of my interested "gene" by using MISO.
After follow the following link, http://genes.mit.edu/burgelab/miso/docs/and read through the forum. Unfortunately, I still face some problems to run the complete set of MISO successful.
I can run some of the python script but I still fail to run some of it :( It shown the following error message when I try some of the MISO python script (compare_miso.py, run_miso.py, sashimi_plot.py, etc). *.* *.* *.* *ImportError: No module named _ufuncs*
I can successful run some of the important MISO script (index_gff.py, sam_to_bam.py).
I'm downloading everything by using Python-2.7. I suspect it might due to numpy or scipy installation problem. Unfortunately, I still fail to figure it out :( I have try to use Python-3.3. But it will show the following error message when I try to run all the python script under MISO : *.* *.* *SyntaxError: invalid syntax*
I have browse through forum and seqanswer etc. Unfortunately I still fail to figure out why it happen :( I have to manual download all the package and install it separately as I don't have the purposely through access network through server. It is due to the network security of server at University.
Thanks and looking forward to hear from any of you.
Hi, you have to give a full traceback otherwise we can't help you. And please don't double post, you sent the same message to scipy-user.
Ralf
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participants (2)
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Ralf Gommers