Thanks so much for your help, David. I'm sorry I did not receive your posts previously -- I have the digest mode on and there is a bit of a delay. I'll try to change my options next time I post a request.
Thanks so much again, Frank
Frank Lagor <dfranci <at> seas.upenn.edu> writes:
Thanks so much for your help, David. I'm sorry I did not receive your posts
previously -- I have the digest mode on and there is a bit of a delay. I'll try to change my options next time I post a request.
Thanks so much again,Frank
Numpy-discussion mailing list Numpy-discussion <at> scipy.org http://projects.scipy.org/mailman/listinfo/numpy-discussion
Hello, I'm trying to run a python script in Condor(http://www.cs.wisc.edu/condor/) on a cluster at uni. This script runs fine when I run it normally, just by typing 'python', followed by the name of the script. However, after writing a condor submission file for it, and submitting it as a condor job, it fails at the importing of numpy, giving: ======================================== Traceback (most recent call last): File "/home/spxjcy/mycondor_stuff/CountApples/xCountApples.py", line 9, in <mo dule> import numpy File "/opt/bin/python/lib/python2.5/site-packages/numpy/__init__.py", line 103 , in <module> import linalg File "/opt/bin/python/lib/python2.5/site-packages/numpy/linalg/__init__.py", l ine 4, in <module> from linalg import * File "/opt/bin/python/lib/python2.5/site-packages/numpy/linalg/linalg.py", lin e 29, in <module> from numpy.linalg import lapack_lite ImportError: liblapack.so.3: cannot open shared object file: No such file or dir ectory ========================================
After reading your thread, I realised that your problem was not the same, but the closest I could find. I tried 'numpy.test()', nothing fails. On 'ldd lapack_lite.so' I get:
======================================== liblapack.so.3 => /usr/lib64/liblapack.so.3 (0x00002aaaaabd6000) libblas.so.3 => /usr/lib64/libblas.so.3 (0x00002aaaab1c2000) libg2c.so.0 => /usr/lib64/libg2c.so.0 (0x00002aaaab314000) libm.so.6 => /lib64/libm.so.6 (0x00002aaaab435000) libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00002aaaab5bb000) libc.so.6 => /lib64/libc.so.6 (0x00002aaaab6c7000) /lib64/ld-linux-x86-64.so.2 (0x0000555555554000) ========================================
I'm not entirely sure what this means, but it looks like there is a file called liblapack.so.3
Another thing I have observed is that other modules which came with python like 'os', 're',etc. all import fine in condor, so I'm guessing that this is to do with numpy on some part.
Please, if you have any ideas about solving this, do say.