scipy.test() warnings, errors and failures
Hi, I just installed numpy (1.0.3) and scipy (0.5.2) on a Windows machine running Python 2.5.1. They both complete installation, and numpy.test() reports no errors. scipy.test() produces a huge stream (see below) of warnings, errors (19), and failures (2), however. Also, there's a deprecation warning when I import scipy. Is this behavior normal? These appear to be the latest versions of everything. Thanks, Matt Python 2.5.1 (r251:54863, Apr 18 2007, 08:51:08) [MSC v.1310 32 bit (Intel)] on win32 Type "copyright", "credits" or "license()" for more information. **************************************************************** Personal firewall software may warn about the connection IDLE makes to its subprocess using this computer's internal loopback interface. This connection is not visible on any external interface and no data is sent to or received from the Internet. **************************************************************** IDLE 1.2.1
import numpy import scipy
Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\misc\__init__.py", line 25 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code
scipy.test()
Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\ndimage\__init__.py", line 40 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\sparse\__init__.py", line 9 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\io\__init__.py", line 20 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\lib\__init__.py", line 5 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\linsolve\umfpack \__init__.py", line 7 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\linsolve\__init__.py", line 13 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\interpolate\__init__.py", line 15 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\optimize\__init__.py", line 17 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\linalg\__init__.py", line 32 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\special\__init__.py", line 22 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\stats\__init__.py", line 15 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\fftpack\__init__.py", line 21 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\integrate\__init__.py", line 16 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\lib\lapack\__init__.py", line 93 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\signal\__init__.py", line 17 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\lib\blas\__init__.py", line 61 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\maxentropy\__init__.py", line 12 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\__init__.py", line 77 return ScipyTest(scipy).test(level, verbosity) DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Found 1 tests for scipy.cluster.vq Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\fftpack\__init__.py", line 21 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Warning (from warnings module): File "C:\Python25\lib\site-packages\numpy\testing\numpytest.py", line 408 suite = obj(mthname) DeprecationWarning: ScipyTestCase is now called NumpyTestCase; please update your code Found 18 tests for scipy.fftpack.basic Found 4 tests for scipy.fftpack.helper Found 20 tests for scipy.fftpack.pseudo_diffs Found 1 tests for scipy.integrate Found 10 tests for scipy.integrate.quadpack Found 3 tests for scipy.integrate.quadrature Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\interpolate\__init__.py", line 15 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Found 6 tests for scipy.interpolate Found 6 tests for scipy.interpolate.fitpack Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\io\__init__.py", line 20 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Found 4 tests for scipy.io.array_import Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\io\tests\test_mio.py", line 28 super(test_mio_array, self).__init__(*args, **kwargs) DeprecationWarning: ScipyTestCase is now called NumpyTestCase; please update your code Found 28 tests for scipy.io.mio Found 12 tests for scipy.io.mmio Found 4 tests for scipy.io.recaster Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\lib\blas\__init__.py", line 61 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Found 16 tests for scipy.lib.blas Found 128 tests for scipy.lib.blas.fblas Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\lib\lapack\__init__.py", line 93 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Found 42 tests for scipy.lib.lapack Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\linalg\__init__.py", line 32 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Found 41 tests for scipy.linalg.basic Found 14 tests for scipy.linalg.blas Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\linalg\tests \test_decomp.py", line 117 ScipyTestCase.__init__(self, *args) DeprecationWarning: ScipyTestCase is now called NumpyTestCase; please update your code Found 53 tests for scipy.linalg.decomp Found 128 tests for scipy.linalg.fblas Found 4 tests for scipy.linalg.lapack Found 7 tests for scipy.linalg.matfuncs Warning: FAILURE importing tests for <module 'scipy.linsolve.umfpack' from '...\\linsolve\\umfpack\\__init__.pyc'> C:\Python25\Lib\site-packages\scipy\linsolve\umfpack\tests \test_umfpack.py:17: AttributeError: 'module' object has no attribute 'umfpack' (in <module>) Warning: FAILURE importing tests for <module 'scipy.linsolve.umfpack.umfpack' from '...y\\linsolve\\umfpack\ \umfpack.pyc'> C:\Python25\Lib\site-packages\scipy\linsolve\umfpack\tests \test_umfpack.py:17: AttributeError: 'module' object has no attribute 'umfpack' (in <module>) Found 2 tests for scipy.maxentropy Found 397 tests for scipy.ndimage Found 6 tests for scipy.optimize Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\optimize\__init__.py", line 17 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Found 1 tests for scipy.optimize.cobyla Found 4 tests for scipy.optimize.zeros Found 4 tests for scipy.signal.signaltools Found 96 tests for scipy.sparse Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\special\__init__.py", line 22 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Found 358 tests for scipy.special.basic Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\stats\__init__.py", line 15 test = ScipyTest().test DeprecationWarning: ScipyTest is now called NumpyTest; please update your code Found 98 tests for scipy.stats Found 70 tests for scipy.stats.distributions Found 10 tests for scipy.stats.morestats Found 0 tests for __main__ ...........................................Residual: 1.05006987327e-007 ...........Took 13 points. ......... Warning (from warnings module): File "C:\Python25\lib\site-packages\scipy\interpolate\fitpack2.py", line 457 warnings.warn(message) UserWarning: The coefficients of the spline returned have been computed as the minimal norm least-squares solution of a (numerically) rank deficient system (deficiency=7). If deficiency is large, the results may be inaccurate. Deficiency may strongly depend on the value of eps. ...... Don't worry about a warning regarding the number of bytes read. ....EEEE.E.EE.E.E.EE.E.E.E.EEEEE....................................................F......................................................................................................................................................................................................................................................................................................................................................................................................Result may be inaccurate, approximate err = 1.82697723188e-008 ...Result may be inaccurate, approximate err = 1.50259560743e-010 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................Resizing... 16 17 24 Resizing... 20 7 35 Resizing... 23 7 47 Resizing... 24 25 58 Resizing... 28 7 68 Resizing... 28 27 73 ................................................Resizing... 16 17 24 Resizing... 20 7 35 Resizing... 23 7 47 Resizing... 24 25 58 Resizing... 28 7 68 Resizing... 28 27 73 ......................Resizing... 16 17 24 Resizing... 20 7 35 Resizing... 23 7 47 Resizing... 24 25 58 Resizing... 28 7 68 Resizing... 28 27 73 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................F.Ties preclude use of exact statistic. ..Ties preclude use of exact statistic. ...... ====================================================================== ERROR: check loadmat case 3dmatrix ---------------------------------------------------------------------- Traceback (most recent call last): File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 85, in cc self._check_case(name, files, expected) File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 75, in _check_case matdict = loadmat(file_name) File "C:\Python25\Lib\site-packages\scipy\io\mio.py", line 96, in loadmat matfile_dict = MR.get_variables() File "C:\Python25\Lib\site-packages\scipy\io\miobase.py", line 269, in get_variables mdict = self.file_header() File "C:\Python25\Lib\site-packages\scipy\io\mio5.py", line 510, in file_header hdict['__header__'] = hdr['description'].strip(' \t\n\000') AttributeError: 'numpy.ndarray' object has no attribute 'strip' ====================================================================== ERROR: check loadmat case cell ---------------------------------------------------------------------- Traceback (most recent call last): File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 85, in cc self._check_case(name, files, expected) File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 75, in _check_case matdict = loadmat(file_name) File "C:\Python25\Lib\site-packages\scipy\io\mio.py", line 96, in loadmat matfile_dict = MR.get_variables() File "C:\Python25\Lib\site-packages\scipy\io\miobase.py", line 269, in get_variables mdict = self.file_header() File "C:\Python25\Lib\site-packages\scipy\io\mio5.py", line 510, in file_header hdict['__header__'] = hdr['description'].strip(' \t\n\000') AttributeError: 'numpy.ndarray' object has no attribute 'strip' ====================================================================== ERROR: check loadmat case cellnest ---------------------------------------------------------------------- Traceback (most recent call last): File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 85, in cc self._check_case(name, files, expected) File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 75, in _check_case matdict = loadmat(file_name) File "C:\Python25\Lib\site-packages\scipy\io\mio.py", line 96, in loadmat matfile_dict = MR.get_variables() File "C:\Python25\Lib\site-packages\scipy\io\miobase.py", line 269, in get_variables mdict = self.file_header() File "C:\Python25\Lib\site-packages\scipy\io\mio5.py", line 510, in file_header hdict['__header__'] = hdr['description'].strip(' \t\n\000') AttributeError: 'numpy.ndarray' object has no attribute 'strip' ====================================================================== ERROR: check loadmat case complex ---------------------------------------------------------------------- Traceback (most recent call last): File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 85, in cc self._check_case(name, files, expected) File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 75, in _check_case matdict = loadmat(file_name) File "C:\Python25\Lib\site-packages\scipy\io\mio.py", line 96, in loadmat matfile_dict = MR.get_variables() File "C:\Python25\Lib\site-packages\scipy\io\miobase.py", line 269, in get_variables mdict = self.file_header() File "C:\Python25\Lib\site-packages\scipy\io\mio5.py", line 510, in file_header hdict['__header__'] = hdr['description'].strip(' \t\n\000') AttributeError: 'numpy.ndarray' object has no attribute 'strip' ====================================================================== ERROR: check loadmat case double ---------------------------------------------------------------------- Traceback (most recent call last): File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 85, in cc self._check_case(name, files, expected) File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 75, in _check_case matdict = loadmat(file_name) File "C:\Python25\Lib\site-packages\scipy\io\mio.py", line 96, in loadmat matfile_dict = MR.get_variables() File "C:\Python25\Lib\site-packages\scipy\io\miobase.py", line 269, in get_variables mdict = self.file_header() File "C:\Python25\Lib\site-packages\scipy\io\mio5.py", line 510, in file_header hdict['__header__'] = hdr['description'].strip(' \t\n\000') AttributeError: 'numpy.ndarray' object has no attribute 'strip' ====================================================================== ERROR: check loadmat case emptycell ---------------------------------------------------------------------- Traceback (most recent call last): File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 85, in cc self._check_case(name, files, expected) File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 75, in _check_case matdict = loadmat(file_name) File "C:\Python25\Lib\site-packages\scipy\io\mio.py", line 96, in loadmat matfile_dict = MR.get_variables() File "C:\Python25\Lib\site-packages\scipy\io\miobase.py", line 269, in get_variables mdict = self.file_header() File "C:\Python25\Lib\site-packages\scipy\io\mio5.py", line 510, in file_header hdict['__header__'] = hdr['description'].strip(' \t\n\000') AttributeError: 'numpy.ndarray' object has no attribute 'strip' ====================================================================== ERROR: check loadmat case matrix ---------------------------------------------------------------------- Traceback (most recent call last): File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 85, in cc self._check_case(name, files, expected) File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 75, in _check_case matdict = loadmat(file_name) File "C:\Python25\Lib\site-packages\scipy\io\mio.py", line 96, in loadmat matfile_dict = MR.get_variables() File "C:\Python25\Lib\site-packages\scipy\io\miobase.py", line 269, in get_variables mdict = self.file_header() File "C:\Python25\Lib\site-packages\scipy\io\mio5.py", line 510, in file_header hdict['__header__'] = hdr['description'].strip(' \t\n\000') AttributeError: 'numpy.ndarray' object has no attribute 'strip' ====================================================================== ERROR: check loadmat case minus ---------------------------------------------------------------------- Traceback (most recent call last): File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 85, in cc self._check_case(name, files, expected) File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 75, in _check_case matdict = loadmat(file_name) File "C:\Python25\Lib\site-packages\scipy\io\mio.py", line 96, in loadmat matfile_dict = MR.get_variables() File "C:\Python25\Lib\site-packages\scipy\io\miobase.py", line 269, in get_variables mdict = self.file_header() File "C:\Python25\Lib\site-packages\scipy\io\mio5.py", line 510, in file_header hdict['__header__'] = hdr['description'].strip(' \t\n\000') AttributeError: 'numpy.ndarray' object has no attribute 'strip' ====================================================================== ERROR: check loadmat case multi ---------------------------------------------------------------------- Traceback (most recent call last): File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 85, in cc self._check_case(name, files, expected) File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 75, in _check_case matdict = loadmat(file_name) File "C:\Python25\Lib\site-packages\scipy\io\mio.py", line 96, in loadmat matfile_dict = MR.get_variables() File "C:\Python25\Lib\site-packages\scipy\io\miobase.py", line 269, in get_variables mdict = self.file_header() File "C:\Python25\Lib\site-packages\scipy\io\mio5.py", line 510, in file_header hdict['__header__'] = hdr['description'].strip(' \t\n\000') AttributeError: 'numpy.ndarray' object has no attribute 'strip' ====================================================================== ERROR: check loadmat case object ---------------------------------------------------------------------- Traceback (most recent call last): File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 85, in cc self._check_case(name, files, expected) File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 75, in _check_case matdict = loadmat(file_name) File "C:\Python25\Lib\site-packages\scipy\io\mio.py", line 96, in loadmat matfile_dict = MR.get_variables() File "C:\Python25\Lib\site-packages\scipy\io\miobase.py", line 269, in get_variables mdict = self.file_header() File "C:\Python25\Lib\site-packages\scipy\io\mio5.py", line 510, in file_header hdict['__header__'] = hdr['description'].strip(' \t\n\000') AttributeError: 'numpy.ndarray' object has no attribute 'strip' ====================================================================== ERROR: check loadmat case onechar ---------------------------------------------------------------------- Traceback (most recent call last): File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 85, in cc self._check_case(name, files, expected) File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 75, in _check_case matdict = loadmat(file_name) File "C:\Python25\Lib\site-packages\scipy\io\mio.py", line 96, in loadmat matfile_dict = MR.get_variables() File "C:\Python25\Lib\site-packages\scipy\io\miobase.py", line 269, in get_variables mdict = self.file_header() File "C:\Python25\Lib\site-packages\scipy\io\mio5.py", line 510, in file_header hdict['__header__'] = hdr['description'].strip(' \t\n\000') AttributeError: 'numpy.ndarray' object has no attribute 'strip' ====================================================================== ERROR: check loadmat case sparse ---------------------------------------------------------------------- Traceback (most recent call last): File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 85, in cc self._check_case(name, files, expected) File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 75, in _check_case matdict = loadmat(file_name) File "C:\Python25\Lib\site-packages\scipy\io\mio.py", line 96, in loadmat matfile_dict = MR.get_variables() File "C:\Python25\Lib\site-packages\scipy\io\miobase.py", line 269, in get_variables mdict = self.file_header() File "C:\Python25\Lib\site-packages\scipy\io\mio5.py", line 510, in file_header hdict['__header__'] = hdr['description'].strip(' \t\n\000') AttributeError: 'numpy.ndarray' object has no attribute 'strip' ====================================================================== ERROR: check loadmat case sparsecomplex ---------------------------------------------------------------------- Traceback (most recent call last): File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 85, in cc self._check_case(name, files, expected) File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 75, in _check_case matdict = loadmat(file_name) File "C:\Python25\Lib\site-packages\scipy\io\mio.py", line 96, in loadmat matfile_dict = MR.get_variables() File "C:\Python25\Lib\site-packages\scipy\io\miobase.py", line 269, in get_variables mdict = self.file_header() File "C:\Python25\Lib\site-packages\scipy\io\mio5.py", line 510, in file_header hdict['__header__'] = hdr['description'].strip(' \t\n\000') AttributeError: 'numpy.ndarray' object has no attribute 'strip' ====================================================================== ERROR: check loadmat case string ---------------------------------------------------------------------- Traceback (most recent call last): File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 85, in cc self._check_case(name, files, expected) File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 75, in _check_case matdict = loadmat(file_name) File "C:\Python25\Lib\site-packages\scipy\io\mio.py", line 96, in loadmat matfile_dict = MR.get_variables() File "C:\Python25\Lib\site-packages\scipy\io\miobase.py", line 269, in get_variables mdict = self.file_header() File "C:\Python25\Lib\site-packages\scipy\io\mio5.py", line 510, in file_header hdict['__header__'] = hdr['description'].strip(' \t\n\000') AttributeError: 'numpy.ndarray' object has no attribute 'strip' ====================================================================== ERROR: check loadmat case stringarray ---------------------------------------------------------------------- Traceback (most recent call last): File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 85, in cc self._check_case(name, files, expected) File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 75, in _check_case matdict = loadmat(file_name) File "C:\Python25\Lib\site-packages\scipy\io\mio.py", line 96, in loadmat matfile_dict = MR.get_variables() File "C:\Python25\Lib\site-packages\scipy\io\miobase.py", line 269, in get_variables mdict = self.file_header() File "C:\Python25\Lib\site-packages\scipy\io\mio5.py", line 510, in file_header hdict['__header__'] = hdr['description'].strip(' \t\n\000') AttributeError: 'numpy.ndarray' object has no attribute 'strip' ====================================================================== ERROR: check loadmat case struct ---------------------------------------------------------------------- Traceback (most recent call last): File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 85, in cc self._check_case(name, files, expected) File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 75, in _check_case matdict = loadmat(file_name) File "C:\Python25\Lib\site-packages\scipy\io\mio.py", line 96, in loadmat matfile_dict = MR.get_variables() File "C:\Python25\Lib\site-packages\scipy\io\miobase.py", line 269, in get_variables mdict = self.file_header() File "C:\Python25\Lib\site-packages\scipy\io\mio5.py", line 510, in file_header hdict['__header__'] = hdr['description'].strip(' \t\n\000') AttributeError: 'numpy.ndarray' object has no attribute 'strip' ====================================================================== ERROR: check loadmat case structarr ---------------------------------------------------------------------- Traceback (most recent call last): File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 85, in cc self._check_case(name, files, expected) File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 75, in _check_case matdict = loadmat(file_name) File "C:\Python25\Lib\site-packages\scipy\io\mio.py", line 96, in loadmat matfile_dict = MR.get_variables() File "C:\Python25\Lib\site-packages\scipy\io\miobase.py", line 269, in get_variables mdict = self.file_header() File "C:\Python25\Lib\site-packages\scipy\io\mio5.py", line 510, in file_header hdict['__header__'] = hdr['description'].strip(' \t\n\000') AttributeError: 'numpy.ndarray' object has no attribute 'strip' ====================================================================== ERROR: check loadmat case structnest ---------------------------------------------------------------------- Traceback (most recent call last): File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 85, in cc self._check_case(name, files, expected) File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 75, in _check_case matdict = loadmat(file_name) File "C:\Python25\Lib\site-packages\scipy\io\mio.py", line 96, in loadmat matfile_dict = MR.get_variables() File "C:\Python25\Lib\site-packages\scipy\io\miobase.py", line 269, in get_variables mdict = self.file_header() File "C:\Python25\Lib\site-packages\scipy\io\mio5.py", line 510, in file_header hdict['__header__'] = hdr['description'].strip(' \t\n\000') AttributeError: 'numpy.ndarray' object has no attribute 'strip' ====================================================================== ERROR: check loadmat case unicode ---------------------------------------------------------------------- Traceback (most recent call last): File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 85, in cc self._check_case(name, files, expected) File "C:\Python25\Lib\site-packages\scipy\io\tests\test_mio.py", line 75, in _check_case matdict = loadmat(file_name) File "C:\Python25\Lib\site-packages\scipy\io\mio.py", line 96, in loadmat matfile_dict = MR.get_variables() File "C:\Python25\Lib\site-packages\scipy\io\miobase.py", line 269, in get_variables mdict = self.file_header() File "C:\Python25\Lib\site-packages\scipy\io\mio5.py", line 510, in file_header hdict['__header__'] = hdr['description'].strip(' \t\n\000') AttributeError: 'numpy.ndarray' object has no attribute 'strip' ====================================================================== FAIL: check_y_stride (scipy.lib.blas.tests.test_fblas.test_cgemv) ---------------------------------------------------------------------- Traceback (most recent call last): File "C:\Python25\Lib\site-packages\scipy\lib\blas\tests \test_fblas.py", line 367, in check_y_stride assert_array_almost_equal(desired_y,y) File "C:\Python25\Lib\site-packages\numpy\testing\utils.py", line 230, in assert_array_almost_equal header='Arrays are not almost equal') File "C:\Python25\Lib\site-packages\numpy\testing\utils.py", line 215, in assert_array_compare assert cond, msg AssertionError: Arrays are not almost equal (mismatch 16.6666666667%) x: array([-5.39065742 +5.39065742j, 1. +1.j , 3.86268878 +0.13731122j, 3. +3.j , -9.09618664+17.09618759j, 5. +5.j ], dtype=complex64) y: array([-5.39065742 +5.39065742j, 1. +1.j , 3.86268878 +0.13731124j, 3. +3.j , -9.09618664+17.09618568j, 5. +5.j ], dtype=complex64) ====================================================================== FAIL: check_expon (scipy.stats.tests.test_morestats.test_anderson) ---------------------------------------------------------------------- Traceback (most recent call last): File "C:\Python25\Lib\site-packages\scipy\stats\tests \test_morestats.py", line 57, in check_expon assert_array_less(A, crit[-2:]) File "C:\Python25\Lib\site-packages\numpy\testing\utils.py", line 235, in assert_array_less header='Arrays are not less-ordered') File "C:\Python25\Lib\site-packages\numpy\testing\utils.py", line 215, in assert_array_compare assert cond, msg AssertionError: Arrays are not less-ordered (mismatch 100.0%) x: array(1.9482886531944246) y: array([ 1.587, 1.934]) ---------------------------------------------------------------------- Ran 1596 tests in 20.720s FAILED (failures=2, errors=19) <unittest.TextTestRunner object at 0x022F6B90>
You can safely ignore the "ScipyTest is now called NumpyTest" warnings. To get rid of the errors you could try installing scipy from svn or user an older version of numpy. Good luck, -- Jarrod Millman Computational Infrastructure for Research Labs 10 Giannini Hall, UC Berkeley phone: 510.643.4014 http://cirl.berkeley.edu/
participants (2)
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Jarrod Millman
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mpjohnson@gmail.com