VisIt Usage at LLNL
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Nov. 6, 2006
6:57 p.m.
Paul Dubois asked me to post a short summary about how VisIt is used at LLNL. First, I am not a VisIt developer, but I have worked with it and those who use it in day to day work. I have also used it to generate high resolution movies of medium to extremely large (~ 4 TeraByte) data sets. VisIt is based on VTK (Visualization Tool Kit, check their webpage via google search). However, several features have been re-implemented for performance reasons or because they did (or do not) exist in VTK. VisIt is open source, but at present time does not have a true open source development model (no sourceforge home page for example). This may change in the future, but I recommend contacting the VisIt team directly to find out about official plans in this direction. >From my perspective, VisIt is used in three ways at LLNL: 1) Debugging (GUI-based, but could use the Python interface) 2) Exploration (GUI-based) 3) Movies (Usually heavier use of the python interface) Debugging: VisIt contains many operators that can be used to find bad cells and and display information about them. A typical debugging session might start with a bad zonal quantity. The user first creates plots of fields of interest using pseudocolor plots for example. Then the user applies an OnionPeel operator and enters the domain and zone number from the error message generated by the code. The user can then vary the number of additional layers of cells displayed around the bad cell. Finally, this small set of cells can be picked or queried, and investigated at different time steps. VisIt can also plot various quantities over time. The expression engine in VisIt can be used to compute many derived quantities. VisIt also handles cells containing multiple materials in a robust way. There is interest in having physics codes dump Python scripts for VisIt that would automatically visualize errors in simulations. Exploration: VisIt supports a large set of expressions, including the expected arithmetic operations along with vector operations (cross, dot, etc.), conditional operations (if-then-else), and many other useful functions. This allows users to create a large set of derived fields and then interact with them in VisIt like any other field. I have seen users generate quite interesting plots by carefully creating derived quantities from the raw simulation dump files. VisIt has a nice set of functionality for creating 2-D plots. Movies: The way I typically approach the problem of generating a movie of a given visualization with a static view-point is as follows. 1) First I set up the visualization with the domain scientist(s). This process is iterative by nature and is entirely GUI based. VisIt can save 'session' files that record everything about a given session, allowing me to create multiple visualizations and re-use them later. 2) Once everything is set up, VisIt can generate the movie from within the GUI, or the session file can be used in a python script to drive VisIt. I usually use the Python interface because that gives direct control over camera position and other features. For large movies, the frames must be generated on a cluster and the batch system is necessary. Python can be used to build scripts that play nice with the batch-system at LLNL. It is also possible to build an entire movie using Python by specifying exactly which operations to apply. The end-result is a self-contained script for generating frames. However, this is a labor intensive approach and is only needed for movies with complex camera movements or other effects. Even for such movies, VisIt has a key-framing system that can handle some common cases for movies. For more information I suggest emailing the VisIt team directly at: visit-help@llnl.gov Regards ------------------------------------------------------------------------- Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642
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dlaney@llnl.gov