Hi all,
I am trying to install manually the latest releases of scipy and numpy on Mac OSX 10.6 Snow Leopard. I previously used the dmg installer that is available, but the numpy version is too new for some other modules I have and need on my machine, so I went for a manual install of numpy 1.4 and scipy 0.8.
I can import numpy without problems, but when I import scipy.cluster for example, I get an error message like :
module compiled against ABI version 2000000 but this version of numpy is 1000009
I understand that both scipy and numpy are not compatible...but what numpy version should I use? I already use the newest release and I cannot go for the svn version as pycuda won't work as it should anymore.
Thanks in advance for your lights on this.
Peter Schmidtke
----------------- PhD Student Department of Physical Chemistry School of Pharmacy University of Barcelona Barcelona, Spain
Thu, 29 Jul 2010 18:45:38 +0200, Peter Schmidtke wrote:
I am trying to install manually the latest releases of scipy and numpy on Mac OSX 10.6 Snow Leopard. I previously used the dmg installer that is available, but the numpy version is too new for some other modules I have and need on my machine,
Which dmg installer? Numpy 1.4.1 is the newest one available.
so I went for a manual install of numpy 1.4 and scipy 0.8.
How is manually compiling 1.4.1 different from using the 1.4.1 dmg? Or is this some OSX issue where you have multiple versions of Python around?
I can import numpy without problems, but when I import scipy.cluster for example, I get an error message like:
module compiled against ABI version 2000000 but this version of numpy is 1000009
You have compiled scipy not against 1.4.1, but some other version of Numpy -- probably the SVN trunk, or possibly 1.4.0 (a release that was cancelled because of binary incompatibility).
You need to recompile scipy, and check that you use the version of Numpy you expect to use.
I understand that both scipy and numpy are not compatible...but what numpy version should I use? I already use the newest release
The above indeed shows that you are probably using 1.4.1, but the scipy you import was compiled against either the SVN version of Numpy or 1.4.0.
On 29/07/2010, at 19:01, Pauli Virtanen wrote:
Thu, 29 Jul 2010 18:45:38 +0200, Peter Schmidtke wrote:
I am trying to install manually the latest releases of scipy and numpy on Mac OSX 10.6 Snow Leopard. I previously used the dmg installer that is available, but the numpy version is too new for some other modules I have and need on my machine,
Which dmg installer? Numpy 1.4.1 is the newest one available.
I used those things here : http://stronginference.com/scipy-superpack/
so I went for a manual install of numpy 1.4 and scipy 0.8.
How is manually compiling 1.4.1 different from using the 1.4.1 dmg? Or is this some OSX issue where you have multiple versions of Python around?
well the scipy superpack uses numpy2.0 (which is a dev version I suppose) and scipy 0.9.
I can import numpy without problems, but when I import scipy.cluster for example, I get an error message like:
module compiled against ABI version 2000000 but this version of numpy is 1000009
You have compiled scipy not against 1.4.1, but some other version of Numpy -- probably the SVN trunk, or possibly 1.4.0 (a release that was cancelled because of binary incompatibility).
well I thought that I got rid of all resting numpy pieces on the system, but I'll double check
You need to recompile scipy, and check that you use the version of Numpy you expect to use.
I understand that both scipy and numpy are not compatible...but what numpy version should I use? I already use the newest release
The above indeed shows that you are probably using 1.4.1, but the scipy you import was compiled against either the SVN version of Numpy or 1.4.0.
-- Pauli Virtanen
NumPy-Discussion mailing list NumPy-Discussion@scipy.org http://mail.scipy.org/mailman/listinfo/numpy-discussion
Peter Schmidtke
----------------- PhD Student Department of Physical Chemistry School of Pharmacy University of Barcelona Barcelona, Spain
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Pauli Virtanen -
Peter Schmidtke