Hi all, On behalf of the SciPy development team, I'm pleased to announce the release of SciPy 1.13.0. Sources and binary wheels can be found at: https://pypi.org/project/scipy/ and at: https://github.com/scipy/scipy/releases/tag/v1.13.0 One of a few ways to install this release with pip: pip install scipy==1.13.0 ========================== SciPy 1.13.0 Release Notes ========================== SciPy 1.13.0 is the culmination of 3 months of hard work. This out-of-band release aims to support NumPy ``2.0.0``, and is backwards compatible to NumPy ``1.22.4``. The version of OpenBLAS used to build the PyPI wheels has been increased to ``0.3.26.dev``. This release requires Python 3.9+ and NumPy 1.22.4 or greater. For running on PyPy, PyPy3 6.0+ is required. ************************** Highlights of this release ************************** - Support for NumPy ``2.0.0``. - Interactive examples have been added to the documentation, allowing users to run the examples locally on embedded Jupyterlite notebooks in their browser. - Preliminary 1D array support for the COO and DOK sparse formats. - Several `scipy.stats` functions have gained support for additional ``axis``, ``nan_policy``, and ``keepdims`` arguments. `scipy.stats` also has several performance and accuracy improvements. ************ New features ************ `scipy.integrate` improvements ============================== - The ``terminal`` attribute of `scipy.integrate.solve_ivp` ``events`` callables now additionally accepts integer values to specify a number of occurrences required for termination, rather than the previous restriction of only accepting a ``bool`` value to terminate on the first registered event. `scipy.io` improvements ======================= - `scipy.io.wavfile.write` has improved ``dtype`` input validation. `scipy.interpolate` improvements ================================ - The Modified Akima Interpolation has been added to ``interpolate.Akima1DInterpolator``, available via the new ``method`` argument. - New method ``BSpline.insert_knot`` inserts a knot into a ``BSpline`` instance. This routine is similar to the module-level `scipy.interpolate.insert` function, and works with the BSpline objects instead of ``tck`` tuples. - ``RegularGridInterpolator`` gained the functionality to compute derivatives in place. For instance, ``RegularGridInterolator((x, y), values, method="cubic")(xi, nu=(1, 1))`` evaluates the mixed second derivative, :math:`\partial^2 / \partial x \partial y` at ``xi``. - Performance characteristics of tensor-product spline methods of ``RegularGridInterpolator`` have been changed: evaluations should be significantly faster, while construction might be slower. If you experience issues with construction times, you may need to experiment with optional keyword arguments ``solver`` and ``solver_args``. Previous behavior (fast construction, slow evaluations) can be obtained via `"*_legacy"` methods: ``method="cubic_legacy"`` is exactly equivalent to ``method="cubic"`` in previous releases. See ``gh-19633`` for details. `scipy.signal` improvements =========================== - Many filter design functions now have improved input validation for the sampling frequency (``fs``). `scipy.sparse` improvements =========================== - ``coo_array`` now supports 1D shapes, and has additional 1D support for ``min``, ``max``, ``argmin``, and ``argmax``. The DOK format now has preliminary 1D support as well, though only supports simple integer indices at the time of writing. - Experimental support has been added for ``pydata/sparse`` array inputs to `scipy.sparse.csgraph`. - ``dok_array`` and ``dok_matrix`` now have proper implementations of ``fromkeys``. - ``csr`` and ``csc`` formats now have improved ``setdiag`` performance. `scipy.spatial` improvements ============================ - ``voronoi_plot_2d`` now draws Voronoi edges to infinity more clearly when the aspect ratio is skewed. `scipy.special` improvements ============================ - All Fortran code, namely, ``AMOS``, ``specfun``, and ``cdflib`` libraries that the majority of special functions depend on, is ported to Cython/C. - The function ``factorialk`` now also supports faster, approximate calculation using ``exact=False``. `scipy.stats` improvements ========================== - `scipy.stats.rankdata` and `scipy.stats.wilcoxon` have been vectorized, improving their performance and the performance of hypothesis tests that depend on them. - ``stats.mannwhitneyu`` should now be faster due to a vectorized statistic calculation, improved caching, improved exploitation of symmetry, and a memory reduction. ``PermutationMethod`` support was also added. - `scipy.stats.mood` now has ``nan_policy`` and ``keepdims`` support. - `scipy.stats.brunnermunzel` now has ``axis`` and ``keepdims`` support. - `scipy.stats.friedmanchisquare`, `scipy.stats.shapiro`, `scipy.stats.normaltest`, `scipy.stats.skewtest`, `scipy.stats.kurtosistest`, `scipy.stats.f_oneway`, `scipy.stats.alexandergovern`, `scipy.stats.combine_pvalues`, and `scipy.stats.kstest` have gained ``axis``, ``nan_policy`` and ``keepdims`` support. - `scipy.stats.boxcox_normmax` has gained a ``ymax`` parameter to allow user specification of the maximum value of the transformed data. - `scipy.stats.vonmises` ``pdf`` method has been extended to support ``kappa=0``. The ``fit`` method is also more performant due to the use of non-trivial bounds to solve for ``kappa``. - High order ``moment`` calculations for `scipy.stats.powerlaw` are now more accurate. - The ``fit`` methods of `scipy.stats.gamma` (with ``method='mm'``) and `scipy.stats.loglaplace` are faster and more reliable. - `scipy.stats.goodness_of_fit` now supports the use of a custom ``statistic`` provided by the user. - `scipy.stats.wilcoxon` now supports ``PermutationMethod``, enabling calculation of accurate p-values in the presence of ties and zeros. - `scipy.stats.monte_carlo_test` now has improved robustness in the face of numerical noise. - `scipy.stats.wasserstein_distance_nd` was introduced to compute the Wasserstein-1 distance between two N-D discrete distributions. ******************* Deprecated features ******************* - Complex dtypes in ``PchipInterpolator`` and ``Akima1DInterpolator`` have been deprecated and will raise an error in SciPy 1.15.0. If you are trying to use the real components of the passed array, use ``np.real`` on ``y``. ****************************** Backwards incompatible changes ****************************** ************* Other changes ************* - The second argument of `scipy.stats.moment` has been renamed to ``order`` while maintaining backward compatibility. ******* Authors ******* * Name (commits) * h-vetinari (50) * acceptacross (1) + * Petteri Aimonen (1) + * Francis Allanah (2) + * Jonas Kock am Brink (1) + * anupriyakkumari (12) + * Aman Atman (2) + * Aaditya Bansal (1) + * Christoph Baumgarten (2) * Sebastian Berg (4) * Nicolas Bloyet (2) + * Matt Borland (1) * Jonas Bosse (1) + * Jake Bowhay (25) * Matthew Brett (1) * Dietrich Brunn (7) * Evgeni Burovski (65) * Matthias Bussonnier (4) * Tim Butters (1) + * Cale (1) + * CJ Carey (5) * Thomas A Caswell (1) * Sean Cheah (44) + * Lucas Colley (97) * com3dian (1) * Gianluca Detommaso (1) + * Thomas Duvernay (1) * DWesl (2) * f380cedric (1) + * fancidev (13) + * Daniel Garcia (1) + * Lukas Geiger (3) * Ralf Gommers (147) * Matt Haberland (81) * Tessa van der Heiden (2) + * Shawn Hsu (1) + * inky (3) + * Jannes Münchmeyer (2) + * Aditya Vidyadhar Kamath (2) + * Agriya Khetarpal (1) + * Andrew Landau (1) + * Eric Larson (7) * Zhen-Qi Liu (1) + * Christian Lorentzen (2) * Adam Lugowski (4) * m-maggi (6) + * Chethin Manage (1) + * Ben Mares (1) * Chris Markiewicz (1) + * Mateusz Sokół (3) * Daniel McCloy (1) + * Melissa Weber Mendonça (6) * Josue Melka (1) * Michał Górny (4) * Juan Montesinos (1) + * Juan F. Montesinos (1) + * Takumasa Nakamura (1) * Andrew Nelson (27) * Praveer Nidamaluri (1) * Yagiz Olmez (5) + * Dimitri Papadopoulos Orfanos (1) * Drew Parsons (1) + * Tirth Patel (7) * Pearu Peterson (1) * Matti Picus (3) * Rambaud Pierrick (1) + * Ilhan Polat (30) * Quentin Barthélemy (1) * Tyler Reddy (117) * Pamphile Roy (10) * Atsushi Sakai (8) * Daniel Schmitz (10) * Dan Schult (17) * Eli Schwartz (4) * Stefanie Senger (1) + * Scott Shambaugh (2) * Kevin Sheppard (2) * sidsrinivasan (4) + * Samuel St-Jean (1) * Albert Steppi (31) * Adam J. Stewart (4) * Kai Striega (3) * Ruikang Sun (1) + * Mike Taves (1) * Nicolas Tessore (3) * Benedict T Thekkel (1) + * Will Tirone (4) * Jacob Vanderplas (2) * Christian Veenhuis (1) * Isaac Virshup (2) * Ben Wallace (1) + * Xuefeng Xu (3) * Xiao Yuan (5) * Irwin Zaid (8) * Elmar Zander (1) + * Mathias Zechmeister (1) + A total of 96 people contributed to this release. People with a "+" by their names contributed a patch for the first time. This list of names is automatically generated, and may not be fully complete. ************************ Issues closed for 1.13.0 ************************ * `#1603 <https://github.com/scipy/scipy/issues/1603>`__: binomial ppf gives bogus results for small binomial probability... * `#2254 <https://github.com/scipy/scipy/issues/2254>`__: linalg.eig test failure (test_singular) (Trac #1735) * `#8398 <https://github.com/scipy/scipy/issues/8398>`__: Precision of CDFLIB too low * `#9950 <https://github.com/scipy/scipy/issues/9950>`__: "++" initialization in kmeans2 fails for univariate data * `#10317 <https://github.com/scipy/scipy/issues/10317>`__: scipy.stats.nbinom.interval returns wrong result for p=1 * `#10569 <https://github.com/scipy/scipy/issues/10569>`__: API: \`s\` argument different in scipy.fft and numpy.fft * `#11359 <https://github.com/scipy/scipy/issues/11359>`__: lfilter error when input b is 0-dim * `#11577 <https://github.com/scipy/scipy/issues/11577>`__: generalized eigenvalues are sometimes wrong (on some hardware) * `#14001 <https://github.com/scipy/scipy/issues/14001>`__: Pycharm scipy SVD returning error code without message * `#14176 <https://github.com/scipy/scipy/issues/14176>`__: Add option for terminating solver after n events * `#14220 <https://github.com/scipy/scipy/issues/14220>`__: Documentation for dctn/idctn s-parameter is confusing * `#14450 <https://github.com/scipy/scipy/issues/14450>`__: Passing a numpy array as sampling frequency to signal.iirfilter... * `#14586 <https://github.com/scipy/scipy/issues/14586>`__: Problem with freeing-up memory of matrix * `#15039 <https://github.com/scipy/scipy/issues/15039>`__: BUG: sparse.dok_matrix.fromkeys method totally nonfunctional * `#15108 <https://github.com/scipy/scipy/issues/15108>`__: BUG: Seg. fault in scipy.sparse.linalg tests in PROPACK * `#16098 <https://github.com/scipy/scipy/issues/16098>`__: BLD:1.8.0: SciPy is not LTO ready * `#16792 <https://github.com/scipy/scipy/issues/16792>`__: BUG: Manually vectorizing scipy.linalg.expm fails in version... * `#16930 <https://github.com/scipy/scipy/issues/16930>`__: BUG: scipy.linalg.blas.dnrm2 may return error result when incx... * `#17004 <https://github.com/scipy/scipy/issues/17004>`__: Test failures for \`Test_SVDS_PROPACK.test_small_sigma2\` test... * `#17125 <https://github.com/scipy/scipy/issues/17125>`__: BUG: osx-64 scipy 1.9.1 test_bad_geneig numerical error * `#17172 <https://github.com/scipy/scipy/issues/17172>`__: BUG: scipy.linalg.expm, coshm, sinhm and tanhm fail for read-only... * `#17362 <https://github.com/scipy/scipy/issues/17362>`__: Add support for Flexiblas * `#17436 <https://github.com/scipy/scipy/issues/17436>`__: BUG: linalg.cholesky: segmentation fault with large matrix * `#17530 <https://github.com/scipy/scipy/issues/17530>`__: Unnecessary approximation in \`scipy.stats.wilcoxon(x, y)\` * `#17681 <https://github.com/scipy/scipy/issues/17681>`__: BUG: special: \`pbvv_seq\` is broken. * `#18086 <https://github.com/scipy/scipy/issues/18086>`__: BUG: \`scipy.linalg.expm\` generates inconsistent results between... * `#18089 <https://github.com/scipy/scipy/issues/18089>`__: DOC: <Scaling due to window not clear for spectrum and density> * `#18166 <https://github.com/scipy/scipy/issues/18166>`__: ENH: stats.vonmises.pdf: return 1/(2pi) when kappa=0 * `#18408 <https://github.com/scipy/scipy/issues/18408>`__: MAINT: status of C++17 in the interregnum of meson without native... * `#18423 <https://github.com/scipy/scipy/issues/18423>`__: ENH: Adding the SDMN Fortran routine to the python Wrapped functions. * `#18678 <https://github.com/scipy/scipy/issues/18678>`__: BUG: scipy.special.stdtrit is not thread-safe for df.size > 500 * `#18722 <https://github.com/scipy/scipy/issues/18722>`__: DOC: in optimize.quadratic_assignment 2opt method, partial_match... * `#18767 <https://github.com/scipy/scipy/issues/18767>`__: Too-strict version restrictions on NumPy break distribution builds * `#18773 <https://github.com/scipy/scipy/issues/18773>`__: BUG: Update oldest-supported-numpy metadata * `#18902 <https://github.com/scipy/scipy/issues/18902>`__: DOC: make default bounds in scipy.optimize.linprog more obvious * `#19088 <https://github.com/scipy/scipy/issues/19088>`__: \`pull-request-labeler\` misbehaving and therefore disabled again * `#19181 <https://github.com/scipy/scipy/issues/19181>`__: TST: improve array API test skip decorators * `#19225 <https://github.com/scipy/scipy/issues/19225>`__: stats.t.fit() with own optimizer (e.g. to use Nelder-Mead) fails... * `#19486 <https://github.com/scipy/scipy/issues/19486>`__: Query: Where is cdflib used in SciPy code? * `#19573 <https://github.com/scipy/scipy/issues/19573>`__: scipy.fft.fht - documentation issue * `#19584 <https://github.com/scipy/scipy/issues/19584>`__: BUG: MATLAB expm vs scipy.linalg.expm: overflow/invalid value... * `#19596 <https://github.com/scipy/scipy/issues/19596>`__: BENCH: spatial.distance.\* "non-xdist" benchmarks * `#19605 <https://github.com/scipy/scipy/issues/19605>`__: BUG: wheel runs have a \*lot\* of test fails at the moment. * `#19642 <https://github.com/scipy/scipy/issues/19642>`__: Speeding up Mann-Whitney U-Test * `#19653 <https://github.com/scipy/scipy/issues/19653>`__: ENH: Voronoi diagram gives unexpected results from scipy.spatial * `#19659 <https://github.com/scipy/scipy/issues/19659>`__: BUG: savemat(..., format="4") throws ValueError errorneously... * `#19678 <https://github.com/scipy/scipy/issues/19678>`__: BUG: scipy.stats.theilslopes returns invalid data when input... * `#19683 <https://github.com/scipy/scipy/issues/19683>`__: BUG/TST: cluster: incorrect test for \`seed\` param of {\`kmeans\`,... * `#19729 <https://github.com/scipy/scipy/issues/19729>`__: DOC: Add interactive examples with jupyterlite-sphinx * `#19732 <https://github.com/scipy/scipy/issues/19732>`__: DOC: Likelihood function depending on censoring type * `#19733 <https://github.com/scipy/scipy/issues/19733>`__: BUG: \`pythran\` min version not enforced * `#19737 <https://github.com/scipy/scipy/issues/19737>`__: TST: io: \`test_fortranfiles_mixed_record\` fails with numpy... * `#19739 <https://github.com/scipy/scipy/issues/19739>`__: BUG: pchip interpolation of complex values is buggy due to sign... * `#19740 <https://github.com/scipy/scipy/issues/19740>`__: CI, MAINT: some easy cleanups for Python version * `#19754 <https://github.com/scipy/scipy/issues/19754>`__: MAINT, TST: test_public_api.py can fail with NumPy main, via... * `#19767 <https://github.com/scipy/scipy/issues/19767>`__: Build warnings from SuperLU fixed upstream * `#19772 <https://github.com/scipy/scipy/issues/19772>`__: DOC: stats: The docstring for \`scipy.stats.crystalball\` needs... * `#19774 <https://github.com/scipy/scipy/issues/19774>`__: DOC: Detail what "concatenate" means in the context of \`spatial.transform.Rotation.concatenate\` * `#19799 <https://github.com/scipy/scipy/issues/19799>`__: DOC: array types: update array validation guidance * `#19813 <https://github.com/scipy/scipy/issues/19813>`__: BUG: typo in specfun.f? * `#19819 <https://github.com/scipy/scipy/issues/19819>`__: BUG: In RBFInterpolator, wrong warning message if degree=-1 * `#19831 <https://github.com/scipy/scipy/issues/19831>`__: Test failures with OpenBLAS 0.3.26 * `#19835 <https://github.com/scipy/scipy/issues/19835>`__: DOC: \`fft\` missing from list of subpackages * `#19836 <https://github.com/scipy/scipy/issues/19836>`__: DOC: remove incorrect sentence about subpackage imports * `#19846 <https://github.com/scipy/scipy/issues/19846>`__: CI: pre-release Linux job isn't using NumPy pre-release anymore * `#19848 <https://github.com/scipy/scipy/issues/19848>`__: \`_lib._util.MapWrapper\` uses multiprocessing with \`fork\`,... * `#19854 <https://github.com/scipy/scipy/issues/19854>`__: scipy.special.logsumexp for complex input with return_sign=True... * `#19862 <https://github.com/scipy/scipy/issues/19862>`__: DOC: documentation for transpose operator for sparse matrices... * `#19867 <https://github.com/scipy/scipy/issues/19867>`__: New ndimage and RBFInterpolator test failures in pre-release... * `#19896 <https://github.com/scipy/scipy/issues/19896>`__: BUG: \`special.nctdtr\` broken in main * `#19897 <https://github.com/scipy/scipy/issues/19897>`__: DOC: scipy.stats.unitary_group does not specify dim>1 * `#19928 <https://github.com/scipy/scipy/issues/19928>`__: TST: special: array types: test tol failure with \`torch\` backend * `#19943 <https://github.com/scipy/scipy/issues/19943>`__: BUG: sparse: CSC.setdiag is slower than converting to LIL and... * `#19948 <https://github.com/scipy/scipy/issues/19948>`__: BUG: scipy.sparse.linalg.gmres fails when provided x0 solves... * `#19951 <https://github.com/scipy/scipy/issues/19951>`__: BUG: boolean masking broken for sparse array classes * `#19963 <https://github.com/scipy/scipy/issues/19963>`__: DOC: scipy.optimize with large differences in parameter scales * `#19974 <https://github.com/scipy/scipy/issues/19974>`__: DOC/REL: retroactively add missing expired deprecations to 1.12.0... * `#19991 <https://github.com/scipy/scipy/issues/19991>`__: BUG: Scipy Optimize with Nelder-Mead method has issues when specifying... * `#19993 <https://github.com/scipy/scipy/issues/19993>`__: BUG: F_INT type conflict with f2py translation of INTEGER type... * `#19998 <https://github.com/scipy/scipy/issues/19998>`__: DOC: Boundary conditions in splrep * `#20001 <https://github.com/scipy/scipy/issues/20001>`__: BUG: scipy.stats.loglaplace may return negative moments * `#20009 <https://github.com/scipy/scipy/issues/20009>`__: BUG: ShortTimeFFT fails with complex input * `#20012 <https://github.com/scipy/scipy/issues/20012>`__: MAINT: Use NumPy sliding_window_view instead of as_strided in... * `#20014 <https://github.com/scipy/scipy/issues/20014>`__: TST: signal: TestCorrelateReal failing on Meson 3.12 job * `#20027 <https://github.com/scipy/scipy/issues/20027>`__: BUG: \`sparse.random\` returns transposed array in 1.12 * `#20031 <https://github.com/scipy/scipy/issues/20031>`__: TST: prefer \`pytest.warns\` over \`np.testing.assert_warns\` * `#20034 <https://github.com/scipy/scipy/issues/20034>`__: TST: linalg: test_decomp_cossin.py::test_cossin_separate[float64]... * `#20036 <https://github.com/scipy/scipy/issues/20036>`__: MAINT: implement scipy.stats.powerlaw._munp * `#20041 <https://github.com/scipy/scipy/issues/20041>`__: BUG: Using LinearConstraint with optimize.differential_evolution * `#20042 <https://github.com/scipy/scipy/issues/20042>`__: BUG: scipy.stats.percentileofscore has a mistake * `#20043 <https://github.com/scipy/scipy/issues/20043>`__: equality used to compare floating point numbers (test_bootstrap_alternative) * `#20060 <https://github.com/scipy/scipy/issues/20060>`__: BUG: stacking two dok_array produces a NotImplementedError about... * `#20062 <https://github.com/scipy/scipy/issues/20062>`__: MAINT, TST: test failures against NumPy main * `#20071 <https://github.com/scipy/scipy/issues/20071>`__: MAINT: doc build warnings * `#20075 <https://github.com/scipy/scipy/issues/20075>`__: BUG: \`eigh_tridiagonal\` with \`select="i"\` fails for 1x1 matrices * `#20084 <https://github.com/scipy/scipy/issues/20084>`__: BUG: \`import scipy._lib._testutils\` raises exception in some... * `#20100 <https://github.com/scipy/scipy/issues/20100>`__: ENH: Expose NoConvergence error class in the scipy.optimize namespace * `#20107 <https://github.com/scipy/scipy/issues/20107>`__: MAINT: builds broken against NumPy main * `#20129 <https://github.com/scipy/scipy/issues/20129>`__: BUG: regression: eval_chebyt gives wrong results for complex... * `#20131 <https://github.com/scipy/scipy/issues/20131>`__: DOC: linalg: Unclear description for the output \`P\` of \`qr\`. * `#20142 <https://github.com/scipy/scipy/issues/20142>`__: Typo in the doc of the Kstwobign distribution * `#20156 <https://github.com/scipy/scipy/issues/20156>`__: BUG: sparse.dok_matrix throws KeyError for valid pop(key) since... * `#20157 <https://github.com/scipy/scipy/issues/20157>`__: MAINT, TST: test_svds_parameter_tol failures * `#20161 <https://github.com/scipy/scipy/issues/20161>`__: \`dev.py test\` fails to accept both \`--argument\` and \`--... * `#20170 <https://github.com/scipy/scipy/issues/20170>`__: Test failures due to \`asarray(..., copy=False)\` semantics change... * `#20180 <https://github.com/scipy/scipy/issues/20180>`__: deprecation warnings for Node.js 16 on GHA wheel build jobs * `#20182 <https://github.com/scipy/scipy/issues/20182>`__: BUG: \`csr_row_index\` and \`csr_column_index\` error for mixed... * `#20188 <https://github.com/scipy/scipy/issues/20188>`__: BUG: Raising scipy.spatial.transform.Rotation to power of 0 adds... * `#20214 <https://github.com/scipy/scipy/issues/20214>`__: BUG: minimize(method="newton-cg") crashes with UnboundLocalError... * `#20220 <https://github.com/scipy/scipy/issues/20220>`__: new problem on Cirrus with Homebrew Python in macOS arm64 jobs * `#20225 <https://github.com/scipy/scipy/issues/20225>`__: CI/MAINT: \`choco\` error for invalid credentials * `#20230 <https://github.com/scipy/scipy/issues/20230>`__: CI, DOC, TST: failure related to scipy/stats/_distn_infrastructure.py... * `#20268 <https://github.com/scipy/scipy/issues/20268>`__: MAINT: failing prerelease deps job - "numpy.broadcast size changed" * `#20291 <https://github.com/scipy/scipy/issues/20291>`__: BUG: Macro collision (\`complex\`) with Windows SDK in amos code * `#20294 <https://github.com/scipy/scipy/issues/20294>`__: BUG: Hang on Windows in scikit-learn with 1.13rc1 and 1.14.dev... * `#20300 <https://github.com/scipy/scipy/issues/20300>`__: BUG: SciPy 1.13.0rc1 not buildable on old macOS due to pocketfft... * `#20302 <https://github.com/scipy/scipy/issues/20302>`__: BUG: scipy.optimize.nnls fails with exception * `#20340 <https://github.com/scipy/scipy/issues/20340>`__: BUG: line_search_wolfe2 fails to converge due to a wrong condition * `#20344 <https://github.com/scipy/scipy/issues/20344>`__: MAINT/DOC: remove outdated note about NumPy imports ************************ Pull requests for 1.13.0 ************************ * `#8404 <https://github.com/scipy/scipy/pull/8404>`__: ENH:special:Tighten cdflib precision to 1e-15 * `#14771 <https://github.com/scipy/scipy/pull/14771>`__: ENH: integrate.solve_ivp: allow event \`terminal\` attribute... * `#16660 <https://github.com/scipy/scipy/pull/16660>`__: DOC: update pydata-sphinx theme * `#17265 <https://github.com/scipy/scipy/pull/17265>`__: Doc: fix linalg.lstsq documentation on residues * `#17525 <https://github.com/scipy/scipy/pull/17525>`__: TST: linalg: temporarily silence failure in test_solve_generalized_discrete_are * `#18530 <https://github.com/scipy/scipy/pull/18530>`__: ENH: sparse: Generalize coo_array to support 1d shapes * `#18541 <https://github.com/scipy/scipy/pull/18541>`__: MAINT: sparse: Stop supporting multi-Ellipsis indexing * `#18828 <https://github.com/scipy/scipy/pull/18828>`__: ENH: improve dtype check in wavfile.write * `#19444 <https://github.com/scipy/scipy/pull/19444>`__: ENH: Add faster inverse-Wishart rvs and logpdf * `#19488 <https://github.com/scipy/scipy/pull/19488>`__: DOC: Improving "Spectral Analysis" section in User Guide * `#19541 <https://github.com/scipy/scipy/pull/19541>`__: BUG: fix cosine distance result type * `#19545 <https://github.com/scipy/scipy/pull/19545>`__: ENH: integrate._tanhsinh: support vector-valued functions * `#19555 <https://github.com/scipy/scipy/pull/19555>`__: DOC: Small documentation and docstring corrections for \`ShortTimeFFT\` * `#19560 <https://github.com/scipy/scipy/pull/19560>`__: ENH:MAINT:special:Cythonize cdflib * `#19587 <https://github.com/scipy/scipy/pull/19587>`__: ENH:MAINT:special:Rewrite amos F77 code * `#19631 <https://github.com/scipy/scipy/pull/19631>`__: ENH: add parameter ymax in stats.boxcox_normmax * `#19633 <https://github.com/scipy/scipy/pull/19633>`__: ENH: use NdBSpline in RegularGridInterpolator to speed up evaluations * `#19650 <https://github.com/scipy/scipy/pull/19650>`__: ENH: stats.kstests: add axis / nan_policy / keepdims support * `#19662 <https://github.com/scipy/scipy/pull/19662>`__: ENH: stats.normaltest/skewtest/kurtosistest: add axis / nan_policy... * `#19663 <https://github.com/scipy/scipy/pull/19663>`__: DOC: Add example to rv_continuous.fit * `#19664 <https://github.com/scipy/scipy/pull/19664>`__: DOC: Add example for mstats.brunnermunzel * `#19666 <https://github.com/scipy/scipy/pull/19666>`__: DOC: Add Example to lbfgsb docstring * `#19667 <https://github.com/scipy/scipy/pull/19667>`__: ENH: integrate._nsum: function for finite and infinite summation * `#19669 <https://github.com/scipy/scipy/pull/19669>`__: REL: set version to 1.13.0.dev0 * `#19672 <https://github.com/scipy/scipy/pull/19672>`__: DEP: signal: remove scipy.signal.{bspline,quadratic,cubic} * `#19674 <https://github.com/scipy/scipy/pull/19674>`__: DEP: linalg: remove tri{,u,l} * `#19675 <https://github.com/scipy/scipy/pull/19675>`__: DEP: signal: remove scipy.signal.{lsim2,impulse2,step2} * `#19676 <https://github.com/scipy/scipy/pull/19676>`__: DEP: signal: remove ability to import window functions from signal... * `#19679 <https://github.com/scipy/scipy/pull/19679>`__: MAINT: stats.theilslopes: consistent promotion of \`x\` and \`y\` * `#19680 <https://github.com/scipy/scipy/pull/19680>`__: ENH: stats.shapiro: add axis / nan_policy / keepdims support * `#19681 <https://github.com/scipy/scipy/pull/19681>`__: MAINT: Add binom to new C++ special lib along with its cephes... * `#19682 <https://github.com/scipy/scipy/pull/19682>`__: TST: consolidate array API test skip decorators * `#19687 <https://github.com/scipy/scipy/pull/19687>`__: MAINT:linalg: Remove redundant det and lu Fortran files * `#19689 <https://github.com/scipy/scipy/pull/19689>`__: MAINT: stats.moment: rename parameter \`moment\` to \`order\` * `#19694 <https://github.com/scipy/scipy/pull/19694>`__: MAINT: Remove \`PDistWeightedMetricWrapper\` and \`CDistWeightedMetricWrapper\` * `#19695 <https://github.com/scipy/scipy/pull/19695>`__: MAINT: Prefer \`np.fill_diagonal\` over \`diag_indices\` * `#19696 <https://github.com/scipy/scipy/pull/19696>`__: ENH: add \`method\` arg to \`interpolate.Akima1DInterpolator\` * `#19698 <https://github.com/scipy/scipy/pull/19698>`__: MAINT: bump project version * `#19701 <https://github.com/scipy/scipy/pull/19701>`__: MAINT: make import of \`array_api_compat\` nicer * `#19703 <https://github.com/scipy/scipy/pull/19703>`__: DEP: non-integers in \`factorial(..., exact=True)\`: deprecate... * `#19708 <https://github.com/scipy/scipy/pull/19708>`__: DOC: spatial.distance: add missing optional param markers * `#19710 <https://github.com/scipy/scipy/pull/19710>`__: TST: fix pytest discovery errors with editable installs * `#19711 <https://github.com/scipy/scipy/pull/19711>`__: DOC: clarify ttest_1samp argument * `#19714 <https://github.com/scipy/scipy/pull/19714>`__: BLD: require Cython >=3.0.4, drop 0.29.X support * `#19715 <https://github.com/scipy/scipy/pull/19715>`__: ENH: sparse: Add DOK support for 1d (without indexing) * `#19716 <https://github.com/scipy/scipy/pull/19716>`__: ENH: enable approximation for factorialk * `#19721 <https://github.com/scipy/scipy/pull/19721>`__: DOC: add rationale for 88 char line length * `#19722 <https://github.com/scipy/scipy/pull/19722>`__: DOC: update release version procedure * `#19723 <https://github.com/scipy/scipy/pull/19723>`__: ENH, MAINT: voronoi_plot_2d nicer inf lines * `#19724 <https://github.com/scipy/scipy/pull/19724>`__: MAINT: Windows NumPy 2.x int shims * `#19725 <https://github.com/scipy/scipy/pull/19725>`__: MNT: use int instead of long in cython code * `#19728 <https://github.com/scipy/scipy/pull/19728>`__: MAINT: enhance the configuration for the \`pull-request-labeler\`... * `#19730 <https://github.com/scipy/scipy/pull/19730>`__: MAINT: bs4 deprecation shim * `#19731 <https://github.com/scipy/scipy/pull/19731>`__: ENH: stats.mood: add nan_policy / keepdims support * `#19738 <https://github.com/scipy/scipy/pull/19738>`__: BLD: require \`pythran>=0.14.0\` * `#19741 <https://github.com/scipy/scipy/pull/19741>`__: ENH: stats.friedmanchisquare/brunnermunzel: add axis / nan_policy... * `#19742 <https://github.com/scipy/scipy/pull/19742>`__: CI: fix PR labeler config file * `#19743 <https://github.com/scipy/scipy/pull/19743>`__: ENH: sparse: Add min-max 1d support and tests * `#19744 <https://github.com/scipy/scipy/pull/19744>`__: ENH: stats.mannwhitneyu: speed improvement, memory reduction,... * `#19745 <https://github.com/scipy/scipy/pull/19745>`__: TST: fortranfiles fix * `#19746 <https://github.com/scipy/scipy/pull/19746>`__: CI: add labeler based on issue/PR titles * `#19749 <https://github.com/scipy/scipy/pull/19749>`__: ENH: stats.mannwhitneyu: vectorize statistic calculation * `#19750 <https://github.com/scipy/scipy/pull/19750>`__: DEV/BLD: generate \`requirements/\*\` files to simplify build * `#19752 <https://github.com/scipy/scipy/pull/19752>`__: DEP: deprecate complex dtypes in \`PchipInterpolator\` and \`Akima1DInterpolator\` * `#19755 <https://github.com/scipy/scipy/pull/19755>`__: MAINT/TST: ignore backend import errors when not in array API... * `#19757 <https://github.com/scipy/scipy/pull/19757>`__: ENH: Add vectorized scalar minimization bracket finder * `#19758 <https://github.com/scipy/scipy/pull/19758>`__: MAINT: correct inaccurate comment * `#19760 <https://github.com/scipy/scipy/pull/19760>`__: MAINT: interpolate: remove dead code * `#19762 <https://github.com/scipy/scipy/pull/19762>`__: ENH: stats.monte_carlo_test: account for inexact calculation... * `#19763 <https://github.com/scipy/scipy/pull/19763>`__: MAINT: integrate._nsum: adjust algorithm for determining number... * `#19768 <https://github.com/scipy/scipy/pull/19768>`__: MAINT: SuperLU upstream fix for compile warnings * `#19770 <https://github.com/scipy/scipy/pull/19770>`__: ENH: stats.wilcoxon: rewrite for speed and clarity; add PermutationMethod... * `#19773 <https://github.com/scipy/scipy/pull/19773>`__: DOC: stats: The docstring for scipy.stats.crystalball needs an... * `#19775 <https://github.com/scipy/scipy/pull/19775>`__: DOC: Docstring and examples for Rotation.concatenate * `#19776 <https://github.com/scipy/scipy/pull/19776>`__: ENH: stats.rankdata: vectorize calculation * `#19777 <https://github.com/scipy/scipy/pull/19777>`__: ENH: add \`BSpline.insert_knot\` method * `#19778 <https://github.com/scipy/scipy/pull/19778>`__: DOC, MAINT: fix make dist in rel process * `#19780 <https://github.com/scipy/scipy/pull/19780>`__: MAINT: scipy.stats: replace \`_normtest_finish\`/\`_ttest_finish\`/etc...... * `#19781 <https://github.com/scipy/scipy/pull/19781>`__: CI, MAINT: switch to stable python release * `#19786 <https://github.com/scipy/scipy/pull/19786>`__: BLD: fix "Failed to guess install tag" in meson-log.txt, add... * `#19787 <https://github.com/scipy/scipy/pull/19787>`__: DOC/BLD: macOS Homebrew OpenBlas detection advice * `#19788 <https://github.com/scipy/scipy/pull/19788>`__: DOC: stats.trim_mean: correct documentation * `#19790 <https://github.com/scipy/scipy/pull/19790>`__: BENCH: Added benchmarks for individual distance metrics * `#19792 <https://github.com/scipy/scipy/pull/19792>`__: MAINT: simplify \`t.logpdf\` * `#19796 <https://github.com/scipy/scipy/pull/19796>`__: API: Enable \`pydata/sparse\` input for csgraph module * `#19803 <https://github.com/scipy/scipy/pull/19803>`__: TST: stats: compare geometric zscore to naive version instead... * `#19807 <https://github.com/scipy/scipy/pull/19807>`__: DOC: fft: add note about FHT formulas * `#19808 <https://github.com/scipy/scipy/pull/19808>`__: MAINT: move elementwise algorithms and framework * `#19810 <https://github.com/scipy/scipy/pull/19810>`__: MAINT: set \`NPY_NO_DEPRECATED_API\` also for Cython code * `#19811 <https://github.com/scipy/scipy/pull/19811>`__: BLD: set default \`cpp_std\` to \`c++17\` * `#19818 <https://github.com/scipy/scipy/pull/19818>`__: MAINT: uarray CXX version hex cleanup * `#19820 <https://github.com/scipy/scipy/pull/19820>`__: TST: linalg: Test Cython LAPACK complex ladiv * `#19821 <https://github.com/scipy/scipy/pull/19821>`__: BLD: resolve missing prototype warnings in lsoda/vode * `#19822 <https://github.com/scipy/scipy/pull/19822>`__: BLD: propack: resolve missing return value warnings * `#19823 <https://github.com/scipy/scipy/pull/19823>`__: CI/DEV: add some new auto-labels * `#19824 <https://github.com/scipy/scipy/pull/19824>`__: ENH:Rewrite specfun F77 code in C * `#19825 <https://github.com/scipy/scipy/pull/19825>`__: MAINT: \`CODEOWNERS\` syntax fix and changes * `#19827 <https://github.com/scipy/scipy/pull/19827>`__: MAINT: spatial: fix build warnings in \`ckdtree\` code * `#19828 <https://github.com/scipy/scipy/pull/19828>`__: CI/DEV: fix and simplify \`label-globs\` syntax * `#19829 <https://github.com/scipy/scipy/pull/19829>`__: MAINT: interpolate: fix build warning from \`_ppoly.pyx\` * `#19837 <https://github.com/scipy/scipy/pull/19837>`__: MAINT: special: fix meson deprecation warning * `#19838 <https://github.com/scipy/scipy/pull/19838>`__: DOC: fft: improve \`s\` description for real transforms * `#19843 <https://github.com/scipy/scipy/pull/19843>`__: DOC: Add \`fft\` to list of submodules in tutorial * `#19844 <https://github.com/scipy/scipy/pull/19844>`__: TST: fix more cases of fd leaks from np.load() * `#19849 <https://github.com/scipy/scipy/pull/19849>`__: CI: fix prerelease job to use numpy 2.0, and add a second job... * `#19853 <https://github.com/scipy/scipy/pull/19853>`__: ENH: sparse: foundation for 1D arrays (add test suite, round... * `#19855 <https://github.com/scipy/scipy/pull/19855>`__: BLD: Revamp BLAS/LAPACK G77 ABI wrappers and fix PROPACK segfaults * `#19856 <https://github.com/scipy/scipy/pull/19856>`__: BLD: simplify pythran version requirement in meson * `#19857 <https://github.com/scipy/scipy/pull/19857>`__: BLD: make scipy build warning-free with LTO enabled * `#19860 <https://github.com/scipy/scipy/pull/19860>`__: MAINT: fix BLD label typo * `#19861 <https://github.com/scipy/scipy/pull/19861>`__: BUG:io:Skip arr_to_chars call for single code points * `#19864 <https://github.com/scipy/scipy/pull/19864>`__: Add documentation to explain behavior for transposing csr or... * `#19866 <https://github.com/scipy/scipy/pull/19866>`__: DOC: Change default for bounds in scipy.optimize.linprog * `#19868 <https://github.com/scipy/scipy/pull/19868>`__: MAINT: fix use of \`unique(..., return_inverse=True)\` * `#19869 <https://github.com/scipy/scipy/pull/19869>`__: MAINT: array types: rename \`as_xparray\` to \`_asarray\` * `#19870 <https://github.com/scipy/scipy/pull/19870>`__: MAINT: logsumexp: properly handle complex sign * `#19871 <https://github.com/scipy/scipy/pull/19871>`__: MAINT: make isinstance check in \`stats._distn_infrastructure\`... * `#19874 <https://github.com/scipy/scipy/pull/19874>`__: rankdata: ensure correct shape for empty inputs * `#19876 <https://github.com/scipy/scipy/pull/19876>`__: MAINT: stats: Add tests to ensure consistency between \`wasserstein_distance\` and different backends of \`wasserstein_distance_nd\` * `#19880 <https://github.com/scipy/scipy/pull/19880>`__: DOC: prepare 1.13.0 release notes * `#19882 <https://github.com/scipy/scipy/pull/19882>`__: MAINT: vendor \`pocketfft\` as git submodule * `#19885 <https://github.com/scipy/scipy/pull/19885>`__: MAINT: fix some small array API support issues * `#19886 <https://github.com/scipy/scipy/pull/19886>`__: TST: stats: fix a few issues with non-reproducible seeding * `#19891 <https://github.com/scipy/scipy/pull/19891>`__: MAINT: stats: fix editable install issue in \`qmc\` and MPL-related... * `#19893 <https://github.com/scipy/scipy/pull/19893>`__: MAINT: remove unused itertools-import in scipy.interpolate._interpolate * `#19901 <https://github.com/scipy/scipy/pull/19901>`__: MAINT: special: remove use of \`numpy.math\` from \`_cdflib.pyx\` * `#19902 <https://github.com/scipy/scipy/pull/19902>`__: BUG:special:cdflib: Correct cdftnc Cython bugs * `#19908 <https://github.com/scipy/scipy/pull/19908>`__: Fix AIX build break. * `#19909 <https://github.com/scipy/scipy/pull/19909>`__: MAINT:linalg:Adjust lwork/liwork changes OpenBLAS 0.3.26 * `#19916 <https://github.com/scipy/scipy/pull/19916>`__: MAINT: update pocketfft git submodule location * `#19917 <https://github.com/scipy/scipy/pull/19917>`__: MAINT: replicate FITPACK's \`fpchec\` routine in python * `#19924 <https://github.com/scipy/scipy/pull/19924>`__: TST: cluster: fix test_kmeans_and_kmeans2_random_seed * `#19925 <https://github.com/scipy/scipy/pull/19925>`__: MAINT: forward port 1.12.0 relnotes * `#19927 <https://github.com/scipy/scipy/pull/19927>`__: BUG: cluster.kmeans\*: array types: accept \`int\`s for k * `#19929 <https://github.com/scipy/scipy/pull/19929>`__: DOC: updated incorrect sentence about subpackage imports. See... * `#19931 <https://github.com/scipy/scipy/pull/19931>`__: MAINT:special:cdflib:Refine the tolerances further * `#19932 <https://github.com/scipy/scipy/pull/19932>`__: ENH:stats:Use explicit formula for gamma.fit('mm') * `#19933 <https://github.com/scipy/scipy/pull/19933>`__: BUG: Correct handling of -inf in special stdr funcs * `#19934 <https://github.com/scipy/scipy/pull/19934>`__: BUG:special:amos: Fix some mistakes in the AMOS C translation * `#19937 <https://github.com/scipy/scipy/pull/19937>`__: TST: Add RNG seeds for TestInvgauss and TestLaplace * `#19938 <https://github.com/scipy/scipy/pull/19938>`__: MAINT: special: array types: fix warning when not in array API... * `#19939 <https://github.com/scipy/scipy/pull/19939>`__: BUG:special:amos: Fix exit path in \`amos_asyi\` * `#19942 <https://github.com/scipy/scipy/pull/19942>`__: MAINT: hypothesis: document minimum required version * `#19944 <https://github.com/scipy/scipy/pull/19944>`__: BUG: Correct handling of inf support in binomial * `#19945 <https://github.com/scipy/scipy/pull/19945>`__: BLD: fix issue with escape sequences in \`__config__.py\` * `#19947 <https://github.com/scipy/scipy/pull/19947>`__: BUG:special:amos: Fix typo in \`amos_mlri\` * `#19950 <https://github.com/scipy/scipy/pull/19950>`__: DOC: stats.logrank: fix typo that affect survival curves in manual * `#19952 <https://github.com/scipy/scipy/pull/19952>`__: BUG:sparse:Add early exit to gmres when x0 already solves problem * `#19957 <https://github.com/scipy/scipy/pull/19957>`__: defect: sparse: 1d bool mask with wrong shape should raise IndexError * `#19961 <https://github.com/scipy/scipy/pull/19961>`__: DOC: Add version warning banner to documentation * `#19962 <https://github.com/scipy/scipy/pull/19962>`__: ENH: sparse: speedup csr/csc setdiag by converting to coo * `#19965 <https://github.com/scipy/scipy/pull/19965>`__: DOC: scale of parameters in optimize.curve_fit * `#19969 <https://github.com/scipy/scipy/pull/19969>`__: DOC: Fix landing page images for dark theme * `#19971 <https://github.com/scipy/scipy/pull/19971>`__: ENH: Input validation for sampling frequency in signal.filter... * `#19975 <https://github.com/scipy/scipy/pull/19975>`__: ENH: support custom statistic in goodness_of_fit function (gh-19894) * `#19977 <https://github.com/scipy/scipy/pull/19977>`__: DOC: document a common alternative parameterization of invgauss. * `#19978 <https://github.com/scipy/scipy/pull/19978>`__: DOC: fix autosummary for scipy.signal.ShortTimeFFT.t/T under... * `#19980 <https://github.com/scipy/scipy/pull/19980>`__: ENH: stats: add axis/nan_policy support to \`f_oneway\` and \`alexandergovern\` * `#19981 <https://github.com/scipy/scipy/pull/19981>`__: TST: correct typo in TestGamma.test_fit_mm function. * `#19995 <https://github.com/scipy/scipy/pull/19995>`__: TST, MAINT: test_immediate_updating fix * `#19997 <https://github.com/scipy/scipy/pull/19997>`__: MAINT: Adjust the codebase to the new \`np.array\`'s \`copy\`... * `#20000 <https://github.com/scipy/scipy/pull/20000>`__: MAINT: interpolate: address review comments on NdBSpline/RGI * `#20003 <https://github.com/scipy/scipy/pull/20003>`__: MAINT: sparse: change coo_matrix.indices to coo_matrix.coords * `#20004 <https://github.com/scipy/scipy/pull/20004>`__: MAINT: sparse: change method names _mul_\* to _matmul_\* all... * `#20005 <https://github.com/scipy/scipy/pull/20005>`__: MAINT: Remove partial from \`__all__\` (removed from submodule) * `#20006 <https://github.com/scipy/scipy/pull/20006>`__: BENCH: optimize: add timings to global optimizers benchmarks * `#20010 <https://github.com/scipy/scipy/pull/20010>`__: BUG: Add proper error message for \`ShortTimeFFT\` for onesided... * `#20013 <https://github.com/scipy/scipy/pull/20013>`__: MAINT: signal: use \`sliding_window_view\` instead of \`as_strided\` * `#20016 <https://github.com/scipy/scipy/pull/20016>`__: DOC: update release docs to reflect new version banner * `#20017 <https://github.com/scipy/scipy/pull/20017>`__: BUG: loglaplace moment should be non-negative. * `#20018 <https://github.com/scipy/scipy/pull/20018>`__: ENH: refer to the Laplace distribution in log-Laplace documentation. * `#20019 <https://github.com/scipy/scipy/pull/20019>`__: DOC: Add support for interactive examples with jupyterlite-sphinx * `#20020 <https://github.com/scipy/scipy/pull/20020>`__: TST: TestCorrelateReal overflow shim * `#20021 <https://github.com/scipy/scipy/pull/20021>`__: ENH: fix numerical instability around zero in boxcox_llf * `#20023 <https://github.com/scipy/scipy/pull/20023>`__: ENH: use analytic formula for log-laplace MLE when loc is known. * `#20024 <https://github.com/scipy/scipy/pull/20024>`__: ENH:stats: Add multivariate Wasserstein distance as a separate... * `#20032 <https://github.com/scipy/scipy/pull/20032>`__: MAINT: Adjust some comments in special C++ library * `#20033 <https://github.com/scipy/scipy/pull/20033>`__: MAINT: sparse: Un-deprecate getnnz() * `#20037 <https://github.com/scipy/scipy/pull/20037>`__: MAINT: Add special handling for complex infinite input in digamma * `#20039 <https://github.com/scipy/scipy/pull/20039>`__: ENH: use analytical formula in scipy.stats.powerlaw._munp(). * `#20044 <https://github.com/scipy/scipy/pull/20044>`__: TST: _ConstraintWrapper returns a violation of the correct shape * `#20045 <https://github.com/scipy/scipy/pull/20045>`__: DOC: add missing np. in tutorial * `#20047 <https://github.com/scipy/scipy/pull/20047>`__: TST: use assert_allclose in test_bootstrap_alternative * `#20052 <https://github.com/scipy/scipy/pull/20052>`__: FIX: Allow any dtype-specifier for ndimage output * `#20053 <https://github.com/scipy/scipy/pull/20053>`__: Add sorting requirement for partial_match and partial_guess * `#20054 <https://github.com/scipy/scipy/pull/20054>`__: BUG: SciPy.interpolate.CubicSpline with periodic data * `#20063 <https://github.com/scipy/scipy/pull/20063>`__: ENH: optimize._differentiate: add option preserve_shape * `#20065 <https://github.com/scipy/scipy/pull/20065>`__: MAINT Fix broken link in \`scipy.stats._multivariate.py\` * `#20067 <https://github.com/scipy/scipy/pull/20067>`__: TST: shims for NumPy fft changes * `#20068 <https://github.com/scipy/scipy/pull/20068>`__: Changed assert_warns in stats testing to pytest.warns. * `#20069 <https://github.com/scipy/scipy/pull/20069>`__: MAINT/DOC: \`special.nrdtrimn/nrdtrisd\` docstring fixes * `#20070 <https://github.com/scipy/scipy/pull/20070>`__: MAINT: silence ruff deprecation warning * `#20076 <https://github.com/scipy/scipy/pull/20076>`__: BUG:linalg:Add early exit to eigh_tridiagonal for 1x1 input * `#20078 <https://github.com/scipy/scipy/pull/20078>`__: CI: update github actions and cibuildwheel * `#20080 <https://github.com/scipy/scipy/pull/20080>`__: BUG: sparse: Fix hstack, etc for dok_array * `#20086 <https://github.com/scipy/scipy/pull/20086>`__: MAINT: detect musl differently. * `#20087 <https://github.com/scipy/scipy/pull/20087>`__: MAINT: switch from \`numpy.array_api\` to \`array-api-strict\` * `#20092 <https://github.com/scipy/scipy/pull/20092>`__: DOC: Fix a could of places that are parsed as substitution references... * `#20093 <https://github.com/scipy/scipy/pull/20093>`__: DOC: Fix small typos in \`signal.rst\` and \`_short_time_fft.py\` * `#20095 <https://github.com/scipy/scipy/pull/20095>`__: DOC: tick tensor product splines off the roadmap * `#20096 <https://github.com/scipy/scipy/pull/20096>`__: TST:linalg:Reduce the size of the cossin test * `#20098 <https://github.com/scipy/scipy/pull/20098>`__: MAINT: minor array API skip improvements * `#20101 <https://github.com/scipy/scipy/pull/20101>`__: MAINT: editorial changes in the doc string of scipy.stats.vonmises. * `#20102 <https://github.com/scipy/scipy/pull/20102>`__: ENH: use non-trivial bounds to solve for kappa of vonmises MLE. * `#20103 <https://github.com/scipy/scipy/pull/20103>`__: MAINT: optimize: expose \`NoConvergence\` * `#20104 <https://github.com/scipy/scipy/pull/20104>`__: ENH: allow shape parameter kappa to be zero in vonmises distribution. * `#20106 <https://github.com/scipy/scipy/pull/20106>`__: DOC: update docstring of stats.percentileofscore * `#20108 <https://github.com/scipy/scipy/pull/20108>`__: MAINT: shim for descr->f access * `#20111 <https://github.com/scipy/scipy/pull/20111>`__: DOC: clarify accepted values for \`dim\` in \`unitary_group\`. * `#20112 <https://github.com/scipy/scipy/pull/20112>`__: BLD: signal: do not install Pythran source alongside the Cython... * `#20119 <https://github.com/scipy/scipy/pull/20119>`__: Fix small issues in docstrings * `#20121 <https://github.com/scipy/scipy/pull/20121>`__: BLD: simplifications in meson.build files * `#20122 <https://github.com/scipy/scipy/pull/20122>`__: MAINT: update Boost.Math to 1.83.0 * `#20123 <https://github.com/scipy/scipy/pull/20123>`__: MAINT: stats: fix test failure in \`kendalltau_seasonal\` * `#20130 <https://github.com/scipy/scipy/pull/20130>`__: BUG: Use Cython implementation of complex hyp2f1 in orthogonal_eval.pxd * `#20135 <https://github.com/scipy/scipy/pull/20135>`__: MAINT: interpolate: define \`F_INT\` as \`int\` rather than \`npy_int32\` * `#20138 <https://github.com/scipy/scipy/pull/20138>`__: TST: optimize: silence the output from calling cobyla with disp=True * `#20141 <https://github.com/scipy/scipy/pull/20141>`__: MAINT/CI: special/array types: test alternative backends in CI * `#20143 <https://github.com/scipy/scipy/pull/20143>`__: DOC: stats: Fix typo in the doc of the Kstwobign distribution * `#20144 <https://github.com/scipy/scipy/pull/20144>`__: MAINT, ENH: Hausdorff simplification * `#20145 <https://github.com/scipy/scipy/pull/20145>`__: TST: special: bump tolerances for new \`cdftnc\` regression tests * `#20146 <https://github.com/scipy/scipy/pull/20146>`__: MAINT: fix incorrect \`noexcept\` usage in Cython functions * `#20149 <https://github.com/scipy/scipy/pull/20149>`__: BLD: Ensure Python.h is included before system headers. * `#20153 <https://github.com/scipy/scipy/pull/20153>`__: BLD: interpolate: _interpnd_info does not need installing * `#20154 <https://github.com/scipy/scipy/pull/20154>`__: ENH: sparse: implement fromkeys for _dok_base * `#20163 <https://github.com/scipy/scipy/pull/20163>`__: MAINT: dev.py: allow --args after -- * `#20168 <https://github.com/scipy/scipy/pull/20168>`__: BUG: optimize: Fix constraint condition in inner loop of nnls * `#20172 <https://github.com/scipy/scipy/pull/20172>`__: MAINT: (additional) array copy semantics shims * `#20173 <https://github.com/scipy/scipy/pull/20173>`__: TST:special:Add partial tests for nrdtrimn and nrdtrisd * `#20174 <https://github.com/scipy/scipy/pull/20174>`__: DOC: interpolate: \`splrep\` default boundary condition * `#20175 <https://github.com/scipy/scipy/pull/20175>`__: MAINT: sparse: add missing dict methods to DOK and tests * `#20176 <https://github.com/scipy/scipy/pull/20176>`__: MAINT: vulture/ruff fixups * `#20181 <https://github.com/scipy/scipy/pull/20181>`__: MAINT: Avoid \`descr->elsize\` and use intp for it. * `#20183 <https://github.com/scipy/scipy/pull/20183>`__: BUG: Fix fancy indexing on compressed sparse arrays with mixed... * `#20184 <https://github.com/scipy/scipy/pull/20184>`__: DOC, DX: Remove version warning banner in latest version * `#20186 <https://github.com/scipy/scipy/pull/20186>`__: MAINT: update action. Closes #20180 * `#20191 <https://github.com/scipy/scipy/pull/20191>`__: BUG: Fix shape of single Rotation raised to the 0 or 1 power * `#20193 <https://github.com/scipy/scipy/pull/20193>`__: MAINT: Bump \`npy2_compat.h\` and add temporary pybind11 workaround * `#20195 <https://github.com/scipy/scipy/pull/20195>`__: ENH: linalg: allow readonly arrays in expm et al * `#20197 <https://github.com/scipy/scipy/pull/20197>`__: TST: linalg: fix complex sort in test_bad_geneig * `#20198 <https://github.com/scipy/scipy/pull/20198>`__: BLD: update minimum Cython version to 3.0.8 * `#20203 <https://github.com/scipy/scipy/pull/20203>`__: TST: linalg: undo xfail TestEig::test_singular * `#20204 <https://github.com/scipy/scipy/pull/20204>`__: TST: linalg: add a regression test for a gen eig problem * `#20205 <https://github.com/scipy/scipy/pull/20205>`__: BUG: Fixed \`fftshift()\` in \`ShortTimeFFT\`. * `#20206 <https://github.com/scipy/scipy/pull/20206>`__: DOC: clarify role of p in linalg.qr. * `#20209 <https://github.com/scipy/scipy/pull/20209>`__: CI: move regular macosx_arm64 from cirrus to GHA * `#20210 <https://github.com/scipy/scipy/pull/20210>`__: BLD: macosx_arm64 wheel build on GHA instead of cirrus * `#20212 <https://github.com/scipy/scipy/pull/20212>`__: BUG: linalg/sqrtm: more robust check for real->complex Schur... * `#20215 <https://github.com/scipy/scipy/pull/20215>`__: MAINT: bump OpenBLAS "the old way" * `#20217 <https://github.com/scipy/scipy/pull/20217>`__: DOC/MAINT: add examples for nctdtridf, nctdtrinc, nctdtrit * `#20218 <https://github.com/scipy/scipy/pull/20218>`__: TST: mark linalg.sqrtm test as xfail * `#20221 <https://github.com/scipy/scipy/pull/20221>`__: TST: Tweak tols and ignore warnings for more reliable SVD tests * `#20222 <https://github.com/scipy/scipy/pull/20222>`__: DOC add likelihood formula to stats.CensoredData * `#20224 <https://github.com/scipy/scipy/pull/20224>`__: BUG: fix \`cluster.vq.kmeans2\` with minit='++' for 1D data * `#20227 <https://github.com/scipy/scipy/pull/20227>`__: MAINT: remove repeated "the" typos * `#20229 <https://github.com/scipy/scipy/pull/20229>`__: BUG: linalg: fix int overflow in Cholesky (potrf) * `#20231 <https://github.com/scipy/scipy/pull/20231>`__: DOC/DX: array types: update \`_asarray\` description * `#20232 <https://github.com/scipy/scipy/pull/20232>`__: BLD: Refactor BLAS/LAPACK wrapper infrastructure * `#20233 <https://github.com/scipy/scipy/pull/20233>`__: DOC: stats.rv_continuous.fit: fix backslashes * `#20235 <https://github.com/scipy/scipy/pull/20235>`__: DOC: add reference for ARGUS distribution in scipy.stats * `#20236 <https://github.com/scipy/scipy/pull/20236>`__: DOC: fix small typo in array API docs * `#20237 <https://github.com/scipy/scipy/pull/20237>`__: MAINT: optimize: update \`_direct\` for typos * `#20238 <https://github.com/scipy/scipy/pull/20238>`__: MAINT: revert ARPACK changes from #20227 * `#20241 <https://github.com/scipy/scipy/pull/20241>`__: BLD: remove use of \`NPY_VISIBILITY_HIDDEN\` * `#20243 <https://github.com/scipy/scipy/pull/20243>`__: MAINT: Specfun translation into C++ * `#20245 <https://github.com/scipy/scipy/pull/20245>`__: MAINT: Updated _specfun.pyx * `#20248 <https://github.com/scipy/scipy/pull/20248>`__: MAINT: Removed specfun_lib and updated specfun_wrappers * `#20250 <https://github.com/scipy/scipy/pull/20250>`__: MAINT: interpolate: const qualify cython arrays * `#20251 <https://github.com/scipy/scipy/pull/20251>`__: MAINT:special:Adjust inf values for cdflib * `#20254 <https://github.com/scipy/scipy/pull/20254>`__: MAINT: linalg: readability refactor Riccati equation solver tests * `#20259 <https://github.com/scipy/scipy/pull/20259>`__: BUG: linalg: fix \`expm\` for large arrays * `#20261 <https://github.com/scipy/scipy/pull/20261>`__: BUG:linalg:Remove the 2x2 branch in expm * `#20263 <https://github.com/scipy/scipy/pull/20263>`__: DOC/REL: add missing expired deprecations to 1.12.0 notes * `#20266 <https://github.com/scipy/scipy/pull/20266>`__: MAINT: stats.wilcoxon: pass \`PermutationMethod\` options to... * `#20270 <https://github.com/scipy/scipy/pull/20270>`__: BLD: update dependencies for 1.13.0 release and numpy 2.0 * `#20279 <https://github.com/scipy/scipy/pull/20279>`__: MAINT: 1.13.0rc1 prep [wheel build] * `#20290 <https://github.com/scipy/scipy/pull/20290>`__: REL: set 1.13.0rc2 unreleased * `#20299 <https://github.com/scipy/scipy/pull/20299>`__: BUG: Optimize: NewtonCG min crashes with xtol=0 * `#20313 <https://github.com/scipy/scipy/pull/20313>`__: MAINT: bump pocketfft, MacOS patch * `#20314 <https://github.com/scipy/scipy/pull/20314>`__: BUG: sparse: Restore random coordinate ordering to pre-1.12 results * `#20318 <https://github.com/scipy/scipy/pull/20318>`__: BUG: signal: Fix scalar input issue of signal.lfilter * `#20327 <https://github.com/scipy/scipy/pull/20327>`__: DOC: mention BSpline.insert_knot in the 1.13.0 release notes * `#20333 <https://github.com/scipy/scipy/pull/20333>`__: BUG: sync pocketfft again * `#20337 <https://github.com/scipy/scipy/pull/20337>`__: MAINT: spatial: use cython_lapack in spatial/_qhull.pyx * `#20341 <https://github.com/scipy/scipy/pull/20341>`__: BUG: linalg: raise an error in dnrm2(..., incx<0) * `#20345 <https://github.com/scipy/scipy/pull/20345>`__: BUG: nelder-mead fix degenerate simplex * `#20347 <https://github.com/scipy/scipy/pull/20347>`__: BLD: require pybind11 >=2.12.0 for numpy 2.0 compatibility * `#20349 <https://github.com/scipy/scipy/pull/20349>`__: Do not segfault in svd(a) with VT.size > INT_MAX * `#20350 <https://github.com/scipy/scipy/pull/20350>`__: BUG: optimize: Fix wrong condition to check invalid optimization... * `#20353 <https://github.com/scipy/scipy/pull/20353>`__: DOC: remove outdated NumPy imports note * `#20359 <https://github.com/scipy/scipy/pull/20359>`__: ENH: Converting amos to std::complex * `#20361 <https://github.com/scipy/scipy/pull/20361>`__: ENH: Rest of amos translation * `#20362 <https://github.com/scipy/scipy/pull/20362>`__: MAINT, BUG: bump OpenBLAS * `#20364 <https://github.com/scipy/scipy/pull/20364>`__: BUG: interpolate: Fix wrong warning message if degree=-1 in \`interpolate.RBFInterpolator\` * `#20374 <https://github.com/scipy/scipy/pull/20374>`__: MAINT: update pybind11 and numpy build-time requirements for... 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