Hi JP, You need to upgrade numpy to at least 1.4 Thanks, N On 22 December 2011 20:10, jip <jeanpatrick.pommier@gmail.com> wrote:
Hi Stéfan, my numpy install seems to be broken:
In [1]: import numpy as np
In [2]: print np.__version__ 1.3.0
In [3]: import numpy.compat --------------------------------------------------------------------------- ImportError Traceback (most recent call last) /home/claire/Applications/ProjetPython/<ipython-input-3-2f9167a96fc7> in <module>() ----> 1 import numpy.compat
ImportError: No module named compat
Thanks JP
On 22 déc, 18:33, Stéfan van der Walt <ste...@sun.ac.za> wrote:
Hi JP
It seems like there is something wrong with your numpy. Could you please execute the following:
import numpy as np print np.__version__ print np
import numpy.compat print numpy.compat
Thanks Stéfan
On Thu, Dec 22, 2011 at 5:51 AM, jip <jeanpatrick.pomm...@gmail.com> wrote:
Dear all, If I try to load a 12bits TIF image: sk.io.use_plugin('freeimage', 'imread') sk.io.use_plugin('matplotlib', 'imshow') dapi=io.imread(path+CC+im)
I have the following message: ** Message: pygobject_register_sinkfunc is deprecated (GstObject) Traceback (most recent call last): File "/home/claire/Applications/ProjetPython/projet particule et objet/Nuclei/QuantSpots-skimage.py", line 49, in <module> sk.io.use_plugin('freeimage', 'imread') File "/usr/local/lib/python2.6/dist-packages/scikits_image-0.5dev- py2.6-linux-i686.egg/skimage/io/_plugins/plugin.py", line 128, in use _load(name) File "/usr/local/lib/python2.6/dist-packages/scikits_image-0.5dev- py2.6-linux-i686.egg/skimage/io/_plugins/plugin.py", line 190, in _load fromlist=[modname]) File "/usr/local/lib/python2.6/dist-packages/scikits_image-0.5dev- py2.6-linux-i686.egg/skimage/io/_plugins/freeimage_plugin.py", line 6, in <module> from numpy.compat import asbytes ImportError: No module named compat
What is that compat module? I have numpy 1.30 installed.
Anyway,I can load the image with gdal (sk.io.use_plugin('gdal', 'imread') with some warnings: ** Message: pygobject_register_sinkfunc is deprecated (GstObject) Warning 1: TIFFReadDirectory:Unknown field with tag 34959 (0x888f) encountered Warning 1: TIFFReadDirectory:Unknown field with tag 34960 (0x8890) encountered Warning 1: TIFFReadDirectory:Unknown field with tag 34959 (0x888f) encountered Warning 1: TIFFReadDirectory:Unknown field with tag 34960 (0x8890) encountered
best regards Jean-Patrick