Traceback (most recent call last):
File attributes_thrash.py", line 127, in <module>
boundaries=segmentation.mark_boundaries(g_median,label_bound)#,color=(1,0,0), outline_color=None, mode='outer', background_label=0)
File "/usr/local/lib/python3.4/dist-packages/skimage/segmentation/boundaries.py", line 213, in mark_boundaries
background=background_label)
File "/usr/local/lib/python3.4/dist-packages/skimage/segmentation/boundaries.py", line 156, in find_boundaries
max_label = np.iinfo(label_img.dtype).max
File "/usr/local/lib/python3.4/dist-packages/numpy/core/getlimits.py", line 254, in __init__
raise ValueError("Invalid integer data type.")
ValueError: Invalid integer data type.
Process finished with exit code 1
Hi Eyal,You are passing a list of regionprops (props, in your code) to "find_boundaries", whereas it expects an array: a single image of labeled objects (label_img, in your code).Juan.--On Wed, Dec 2, 2015 at 5:33 PM, Eyal Saiet <ejsaiet@alaska.edu> wrote:--bellow is the code, in addition I added a plot of the label_image object.Stefan,I do not understand what is not true about the label_image object.
- label_image=measure.label(g_median_bin, background=0)
- label_image +=1
- plt.figure()
- plt.imshow(label_image,cmap=plt.cm.gray,interpolation='nearest',origin='lower')
- plt.title('label_image')
- plt.show()
- props = measure.regionprops(label_image,intensity_image=g_median_bin)
- label_bound=segmentation.find_boundaries(props,connectivity=1,mode='thick',background=0)
- boundaries=segmentation.mark_boundaries(g_median,label_bound)
On Tue, Dec 1, 2015 at 8:09 PM, Stefan van der Walt <stefanv@berkeley.edu> wrote:On 2015-12-01 21:00:16, Arctic_python <ejsaiet@alaska.edu> wrote:
> ndim = label_img.ndim
> AttributeError: 'list' object has no attribute 'ndim'
>
> 1. label_image=measure.label(g_median_bin, background=0) # g_median_bin
> is a binary image
That does not seem to be true, given the error message.
Stéfan
--
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--Eyal SaietProject managerRemote sensing and in-situ measurements
Geophysical InstituteUniversity of Alaska FairbanksFairbanks, AK 99775(907) 750 6555 (cell)
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