Hi Stéfan,
Thank you so much!
I have things to learn with your script. You use a dictionary for the bands, isn't it? That may help me to write a class where the number of fluorochromes can vary.
When Running the script, I get:
Traceback (most recent call last):
File "/home/claire/Applications/ProjetPython/mfish/mfish.py", line 20, in <module>
bands.append(sio.imread(band))
File "/usr/local/lib/python2.6/dist-packages/scikits.image-0.3dev-py2.6-linux-i686.egg/scikits/image/io/io.py", line 72, in imread
return func(*args, **kwargs)
File "/usr/local/lib/python2.6/dist-packages/scikits.image-0.3dev-py2.6-linux-i686.egg/scikits/image/io/_plugins/pil_plugin.py", line 16, in imread
im = Image.open(fname)
File "/usr/lib/python2.6/dist-packages/PIL/Image.py", line 1952, in open
fp = __builtin__.open(fp, "rb")
IOError: [Errno 2] No such file or directory: 'Aqua.tif'
img = call_plugin('imread', fname, plugin=plugin, **plugin_args)
File "/usr/local/lib/python2.6/dist-packages/scikits.image-0.3dev-py2.6-linux-i686.egg/scikits/image/io/_plugins/plugin.py", line 88, in call
I check if I didn't modify some path or file, but I don't think so:
~/Applications/ImagesTest/MFISH$ ls
Aqua.tif Case Info FarRed.tif G.png Kar.tif Red.tif
B.png Dapi.tif Gold.tif Green.tif README.TXT R.png
claire@claire-laptop:~/Applications/ImagesTest/MFISH$ pwd
/home/claire/Applications/ImagesTest/MFISH
Best Regards
Jean-Patrick