@Guillaume, please contribute the example ASAP because I'm struggling with the exact same problem! =D In particular, the nuclei example from pythonvision is not ideal because they gloss over a lot of parameter tuning that is much easier to deal with in 2D than 3D. I'll be happy to hear about your experience!

Juan.


On Wed, Nov 20, 2013 at 9:50 PM, Brickle Macho <bricklemacho@gmail.com> wrote:
I can always adapt this example (http://pythonvision.org/basic-tutorial) which uses pymorph and mahotaos to counting nuceli and segments the image as a gallery example for skimage (obviously acknowledging the original tutorial).  Or is it bad form to copy/use another example.

Michael.
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On 20/11/2013 2:13 pm, Stéfan van der Walt wrote:

On 20 Nov 2013 07:33, "Juan Nunez-Iglesias" <jni.soma@gmail.com> wrote:
>
> I'm guessing you are applying label() directly to your image, which is not the right way to use it.

Looks like isolating objects is a common problem. Time for another gallery example? We already have the coins, but perhaps something more realistic with some biological data.

Stéfan

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