Re: Skeletonization

2011/10/13 Stéfan van der Walt

Hi Neil,

On Thu, Oct 13, 2011 at 6:45 AM, Neil Yager wrote:

...

I'm thinking about doing a thresholding algorithm next, followed by perhaps gabor filters or gray-level co-occurance matrices (if no one is already working on these).

I've got some old grey-level c.o.m. code here, if you want to have a look:

http://mentat.za.net/cgi-bin/hgwebdir.cgi/greycomatrix/

Adaptive / auto-thresholding should be fun!

Also, cellprofiler has some thresholding code available: https://svn.broadinstitute.org/CellProfiler/trunk/CellProfiler/cellprofiler/... The "contributions" page on the skimage website only mentions converting the morphology and filter modules from cellprofiler, but I thinking everything in the cpmath module is BSD licensed. I played around with the thresholding code a bit: it was a bit slow and the interface was a little confusing, but it may serve as a good starting point. Best, -Tony