I love Emmanuelle's posts.

I think snakes might also work for 3D segmentation:
https://github.com/pmneila/morphsnakes

Matteo Niccoli
P. Geo., M.sc.
Geophysics and data science
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On Wed, Apr 5, 2017 at 12:22 PM, Stefan van der Walt <stefanv@berkeley.edu> wrote:
On Wed, Apr 5, 2017, at 09:29, Vighnesh Birodkar wrote:
I was wondering if anyone on the list knew about software to do 3d segmentation.

There's so much going on in that space that I wouldn't even know where to start without understanding your problem in more detail.  But here's a place to start, a blog post by Emmanuelle, one of our core devs:

http://emmanuelle.github.io/segmentation-of-3-d-tomography-images-with-python-and-scikit-image.html

Stéfan


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