Hi Stefanie, Jean-Patrick, et al,

I invite you to look at my Skan (skeleton analysis) package. Docs here:

https://jni.github.io/skan/

Paper here:

https://peerj.com/articles/4312/

(the supplemental info mentions some of the edge cases we’ve taken care of.)

Skan is installable with "pip install skan" or "conda install -c conda-forge skan”.

I’m working on a new higher level Skeleton class, but it’s a WIP and you’ll need to install from source:

https://github.com/jni/skan/blob/5c0d23e5b1eab2fb06b25ff599e98eaa11d621e6/skan/csr.py#L234-L425

(Not that that’s a big deal since the lib is pure Python.)

Comments, suggestions, and contributions are all welcome!

Juan.

On 29 Nov 2018, at 8:37 am, Jean-Patrick Pommier <jeanpatrick.pommier@gmail.com> wrote:

I tried this : https://dip4fish.blogspot.com/2014/05/construct-graph-from-skeleton-image-of.html

Le mer. 28 nov. 2018 à 19:59, Stefanie Lück <luecks@gmail.com> a écrit :

Dear all,

I have a question I use the medial axis skeletonization implementation of scikit-image. Is it possible to get the length of the medial axis and the number of branches growing from the medial axis?

Thank you very much in advance

Stefanie

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http://dip4fish.blogspot.fr/
Dedicated to Digital Image Processing for FISH, QFISH and other things about the telomeres.

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