I love Emmanuelle's posts. I think snakes might also work for 3D segmentation: https://github.com/pmneila/morphsnakes Matteo Niccoli P. Geo., M.sc. Geophysics and data science [image: WordPress] <http://mycarta.wordpress.com/>[image: LinkedIn] <http://www.linkedin.com/in/matteo-niccoli-031aa426>[image: Twitter] <http://twitter.com/@my_carta>[image: Custom link] <https://github.com/mycarta>[image: Custom link] <https://www.researchgate.net/profile/Matteo_Niccoli2> On Wed, Apr 5, 2017 at 12:22 PM, Stefan van der Walt <stefanv@berkeley.edu> wrote:

On Wed, Apr 5, 2017, at 09:29, Vighnesh Birodkar wrote:

I was wondering if anyone on the list knew about software to do 3d segmentation.

There's so much going on in that space that I wouldn't even know where to start without understanding your problem in more detail. But here's a place to start, a blog post by Emmanuelle, one of our core devs:

http://emmanuelle.github.io/segmentation-of-3-d- tomography-images-with-python-and-scikit-image.html

Stéfan

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