Hi JP It seems like there is something wrong with your numpy. Could you please execute the following: import numpy as np print np.__version__ print np import numpy.compat print numpy.compat Thanks Stéfan On Thu, Dec 22, 2011 at 5:51 AM, jip <jeanpatrick.pommier@gmail.com> wrote:

Dear all, If I try to load a 12bits TIF image: sk.io.use_plugin('freeimage', 'imread') sk.io.use_plugin('matplotlib', 'imshow') dapi=io.imread(path+CC+im)

I have the following message: ** Message: pygobject_register_sinkfunc is deprecated (GstObject) Traceback (most recent call last):  File "/home/claire/Applications/ProjetPython/projet particule et objet/Nuclei/QuantSpots-skimage.py", line 49, in <module>    sk.io.use_plugin('freeimage', 'imread')  File "/usr/local/lib/python2.6/dist-packages/scikits_image-0.5dev- py2.6-linux-i686.egg/skimage/io/_plugins/plugin.py", line 128, in use    _load(name)  File "/usr/local/lib/python2.6/dist-packages/scikits_image-0.5dev- py2.6-linux-i686.egg/skimage/io/_plugins/plugin.py", line 190, in _load    fromlist=[modname])  File "/usr/local/lib/python2.6/dist-packages/scikits_image-0.5dev- py2.6-linux-i686.egg/skimage/io/_plugins/freeimage_plugin.py", line 6, in <module>    from numpy.compat import asbytes ImportError: No module named compat

What is that compat module? I have numpy 1.30 installed.

Anyway,I can load the image with gdal  (sk.io.use_plugin('gdal', 'imread') with some warnings: ** Message: pygobject_register_sinkfunc is deprecated (GstObject) Warning 1: TIFFReadDirectory:Unknown field with tag 34959 (0x888f) encountered Warning 1: TIFFReadDirectory:Unknown field with tag 34960 (0x8890) encountered Warning 1: TIFFReadDirectory:Unknown field with tag 34959 (0x888f) encountered Warning 1: TIFFReadDirectory:Unknown field with tag 34960 (0x8890) encountered

best regards Jean-Patrick