On Mon, Mar 26, 2012 at 6:36 PM, Tony Yu <tsyu80@gmail.com> wrote:

Thanks for checking. What do you mean by "correct position in the correlation"?

It looked like you took the result of np.correlate, and then normalized those coefficients. I wasn't sure (didn't verify) whether the normalization was computed for the correct position in the np.correlate result.

Hmm, I was under the impression that half-template matches would be appropriately penalized.

That explanation seems reasonable--such behaviour seems totally sane. Stéfan