It looks like the IPython notebook code added to `dox/ext/plot2rst.py` is the cause. Specifically, the call to `publish_parts` ( https://github.com/scikit-image/scikit-image/blob/master/doc/ext/plot2rst.py...) is causing problems with some links. For this example, links aren't being resolved correctly---I'm not sure why though. Note that links that define and refer-to links in separate blocks will fail (e.g. the Radon example), but that's not the case here. On Wed, Jun 25, 2014 at 10:15 AM, Rishabh Raj <rishabhr123@gmail.com> wrote:

The ipynb link also seems to be not generated.

On Wednesday, June 25, 2014, Stéfan van der Walt <stefan@sun.ac.za> wrote:

...

I don't see it either! Yikes, how did that happen?

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-- Best, Rishabh Raj

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