Re: scikit-image paper
Hi, I think we should decide where and how we write codes, in the text with a snippet style and/or at the end with a full code. I don't know how it depends on the journal where you want to submit the paper. Have you reached a consensus about that? Thank you. Best. -- François Boulogne. http://www.sciunto.org GPG fingerprint: 25F6 C971 4875 A6C1 EDD1 75C8 1AA7 216E 32D5 F22F
On Fri, 24 Jan 2014 17:57:17 -0500, François Boulogne wrote:
I think we should decide where and how we write codes, in the text with a snippet style and/or at the end with a full code. I don't know how it depends on the journal where you want to submit the paper. Have you reached a consensus about that?
If you want to show something specific, e.g. the simplicity of building a pipeline, for which you need just 3-5 lines of code, then it should probably go inline. If it is a longer snippet, attach it at the end or perhaps think whether it should be included at all. We can very easily write an IPython notebook and simply reference that from the paper for examples. Stéfan
Hi guys, Just a curiosity following up on the notebook question: Is there a standard practice to submitting journal articles with iPython notebooks? We were looking to do the same with a few papers in our lab and wondered if this was common yet, if there were guidelines set forth by the journals to this regard, and if only certain journals accepted notebook as accompanying materials. On Friday, January 24, 2014 7:01:39 PM UTC-5, Stefan van der Walt wrote:
On Fri, 24 Jan 2014 17:57:17 -0500, François Boulogne wrote:
I think we should decide where and how we write codes, in the text with a snippet style and/or at the end with a full code. I don't know how it depends on the journal where you want to submit the paper. Have you reached a consensus about that?
If you want to show something specific, e.g. the simplicity of building a pipeline, for which you need just 3-5 lines of code, then it should probably go inline. If it is a longer snippet, attach it at the end or perhaps think whether it should be included at all.
We can very easily write an IPython notebook and simply reference that from the paper for examples.
Stéfan
Hi Adam On Mon, 27 Jan 2014 12:53:49 -0800, Adam Hughes wrote:
Just a curiosity following up on the notebook question: Is there a standard practice to submitting journal articles with iPython notebooks? We were looking to do the same with a few papers in our lab and wondered if this was common yet, if there were guidelines set forth by the journals to this regard, and if only certain journals accepted notebook as accompanying materials.
Perhaps have a chat to Konrad Hinsen about his ActivePapers project: http://python.6.x6.nabble.com/Interfacing-ActivePapers-with-IPython-notebook... Regards Stéfan
Hi all, Although we need a paper before we need to find a home for it, I came across this blog post from PeerJ, which appears to be moving up in the world! Also, they apparently accept latex submissions, even if they don't provide a template. http://blog.peerj.com/post/74392709695/two-reviews-of-peerj Just thought I'd add the journal to the pile. Juan. On Tue, Jan 28, 2014 at 10:03 AM, Stéfan van der Walt <stefan@sun.ac.za>wrote:
Hi Adam
On Mon, 27 Jan 2014 12:53:49 -0800, Adam Hughes wrote:
Just a curiosity following up on the notebook question: Is there a standard practice to submitting journal articles with iPython notebooks? We were looking to do the same with a few papers in our lab and wondered if this was common yet, if there were guidelines set forth by the journals to this regard, and if only certain journals accepted notebook as accompanying materials.
Perhaps have a chat to Konrad Hinsen about his ActivePapers project:
http://python.6.x6.nabble.com/Interfacing-ActivePapers-with-IPython-notebook...
Regards Stéfan
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participants (4)
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Adam Hughes -
François Boulogne -
Juan Nunez-Iglesias -
Stéfan van der Walt